AT4G17420

Mitochondrial biogenesis AIM24

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010214
Physical Location & Seq
Reverse (-)
9722354 .. 9724707
2354 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17420.1

Sequence Viewer

Length: 858 bp
ATGGCTGCTCCGTTTTTCTCTACTCCATTTCAGCCTTATGTCTATCAGAGTCAAGAAGATACGATCACACCTTTCCAAATTTTGGGTGGTGAAGCACAGGTTGTTCAGATAATGTTAAAACCACAAGAGAAGGTCATTGCTAAGCCTGGTTCAATGTGCTACATGTCTGGGTCCATTGAGATGGATAATACTTATACCCCTGAACAAGAAGTTGGAGTTGTACAATGGATTTTAGGAAAGAGTGTTAGTAGTATAGTTCTTCGTAACACTGGGCAAAACGATGGATTTGTTGGTATCGCTGCACCTTCTTTGGCAAGGATTCTCCCACTTGATTTGGCAATGTTTGGTGGGGACATCTTATGCCAGCCAGATGCATTTCTCTGTTCTGTCCATGATGTGAAGGTCGTAAACACTGTGTATCAGAGACATCGAGCAAGAAACATTGCTGCAGCTGGGGCTGAGGGGGTTCTGAGACAAAGGCTTTCTGGTCAGGGTCTTGCTTTTATTATCGCTGGCGGCTCTGTTGTACAGAAAAACCTGGAGGTGGGAGAAGTTCTCACCATTGACGTTTCTTGCATTGCCGCTCTCACTCCGTCGATCAATTTCCAAATCAAATACAATGCTGCTCCTGTAAGACGGGCAGTTTTCGGGGGTGATAATGTAGTAACAGCAACTCTAACGGGACCAGGCATCGTGTTCATCCAAAGTTTACCGTTTCATCGACTCTCGCAGCGAATTGCAAGGTCGGTGACGTCCCCAAATATGAGAGAAAATCCAAGATTATTAGTTCAAATAGGGTTATTCATATTTCTTGCATACGTTGTAATTGTGTCCTCTTTAATCCTTACTGAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIM24

Protein Analysis

285

Amino Acids

30.86

Weight (kDa)

7.67

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIM24 PF01987 25 - 237 5.7e-49 Mitochondrial biogenesis AIM24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 755
AccB7I CCANNNNNTGG 1 cut(s) 82
AccBSI CCGCTC 1 cut(s) 584
AciI CCGC 2 cut(s) 516, 582
AcsI RAATTY 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 752
AfaI GTAC 2 cut(s) 222, 528
AfiI CCNNNNNNNGG 2 cut(s) 82, 544
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 2 cut(s) 153, 791
AjnI CCWGG 3 cut(s) 145, 537, 685
AjuI GAANNNNNNNTTGG 2 cut(s) 195, 227
AluBI AGCT 1 cut(s) 452
AluI AGCT 1 cut(s) 452
Alw26I GTCTC 2 cut(s) 418, 466
ApeKI GCWGC 6 cut(s) 5, 299, 446, 449, 623, 730
ApoI RAATTY 1 cut(s) 78
AspS9I GGNCC 2 cut(s) 171, 683
AsuHPI GGTGA 4 cut(s) 101, 550, 665, 760
AvaII GGWCC 2 cut(s) 171, 683
BbvCI CCTCAGC 1 cut(s) 459
BbvI GCAGC 5 cut(s) 286, 433, 461, 610, 742
BccI CCATC 2 cut(s) 175, 275
BciT130I CCWGG 3 cut(s) 147, 539, 687
BcoDI GTCTC 2 cut(s) 418, 466
BfmI CTRYAG 1 cut(s) 447
BisI GCNGC 8 cut(s) 6, 300, 447, 450, 517, 582, 624, 731
BlpI GCTNAGC 1 cut(s) 141
BlsI GCNGC 8 cut(s) 7, 301, 448, 451, 518, 583, 625, 732
Bme1390I CCNGG 3 cut(s) 147, 539, 687
Bme18I GGWCC 2 cut(s) 171, 683
BmgT120I GGNCC 2 cut(s) 171, 683
BmiI GGNNCC 2 cut(s) 172, 684
BmrFI CCNGG 3 cut(s) 147, 539, 687
BmrI ACTGGG 1 cut(s) 279
BmsI GCATC 2 cut(s) 361, 699
BmuI ACTGGG 1 cut(s) 279
BplI GAGNNNNNCTC 2 cut(s) 540, 572
BpmI CTGGAG 1 cut(s) 560
Bpu10I CCTNAGC 1 cut(s) 459
Bpu1102I GCTNAGC 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 752
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 544
Bse1I ACTGG 1 cut(s) 274
Bse3DI GCAATG 4 cut(s) 135, 345, 441, 576
BseBI CCWGG 3 cut(s) 147, 539, 687
BseGI GGATG 1 cut(s) 699
BseLI CCNNNNNNNGG 2 cut(s) 82, 544
BseMI GCAATG 4 cut(s) 135, 345, 441, 576
BseMII CTCAG 2 cut(s) 450, 461
BseNI ACTGG 1 cut(s) 274
BseXI GCAGC 5 cut(s) 286, 433, 461, 610, 742
BseYI CCCAGC 1 cut(s) 452
BsgI GTGCAG 1 cut(s) 285
BslFI GGGAC 3 cut(s) 365, 696, 739
BslI CCNNNNNNNGG 2 cut(s) 82, 544
BsmAI GTCTC 2 cut(s) 418, 466
BsmFI GGGAC 3 cut(s) 365, 696, 739
Bsp1407I TGTACA 2 cut(s) 220, 526
Bsp143I GATC 2 cut(s) 63, 597
Bsp1720I GCTNAGC 1 cut(s) 141
BspACI CCGC 2 cut(s) 516, 582
BspCNI CTCAG 2 cut(s) 451, 462
BspLI GGNNCC 2 cut(s) 172, 684
BspMAI CTGCAG 1 cut(s) 451
BsrBI CCGCTC 1 cut(s) 584
BsrDI GCAATG 4 cut(s) 135, 345, 441, 576
BsrGI TGTACA 2 cut(s) 220, 526
BsrI ACTGG 1 cut(s) 274
BssMI GATC 2 cut(s) 63, 597
BssNI GRCGYC 1 cut(s) 752
Bst2UI CCWGG 3 cut(s) 147, 539, 687
Bst4CI ACNGT 2 cut(s) 415, 714
BstACI GRCGYC 1 cut(s) 752
BstAUI TGTACA 2 cut(s) 220, 526
BstC8I GCNNGC 2 cut(s) 365, 514
BstDEI CTNAG 3 cut(s) 141, 459, 470
BstF5I GGATG 1 cut(s) 699
BstKTI GATC 2 cut(s) 66, 600
BstMAI GTCTC 2 cut(s) 418, 466
BstMBI GATC 2 cut(s) 63, 597
BstMWI GCNNNNNNNGC 1 cut(s) 455
BstNI CCWGG 3 cut(s) 147, 539, 687
BstNSI RCATGY 1 cut(s) 166
BstSCI CCNGG 3 cut(s) 145, 537, 685
BstSFI CTRYAG 1 cut(s) 447
BstV1I GCAGC 5 cut(s) 286, 433, 461, 610, 742
BstXI CCANNNNNNTGG 1 cut(s) 181
BtsCI GGATG 1 cut(s) 699
BtsIMutI CAGTG 2 cut(s) 267, 411
Cac8I GCNNGC 2 cut(s) 365, 514
Cfr13I GGNCC 2 cut(s) 171, 683
Csp6I GTAC 2 cut(s) 221, 527
CspCI CAANNNNNGTGG 2 cut(s) 315, 350
CviAII CATG 2 cut(s) 163, 392
CviJI RGCY 8 cut(s) 5, 34, 145, 367, 452, 458, 481, 519
CviKI_1 RGCY 8 cut(s) 5, 34, 145, 367, 452, 458, 481, 519
CviQI GTAC 2 cut(s) 221, 527
DdeI CTNAG 3 cut(s) 141, 459, 470
DpnI GATC 2 cut(s) 65, 599
DpnII GATC 2 cut(s) 63, 597
Eco47I GGWCC 2 cut(s) 171, 683
EcoRII CCWGG 3 cut(s) 145, 537, 685
EcoT22I ATGCAT 1 cut(s) 376
FaeI CATG 2 cut(s) 166, 395
FaiI YATR 9 cut(s) 39, 164, 195, 254, 361, 393, 764, 806, 817
FaqI GGGAC 3 cut(s) 365, 696, 739
FatI CATG 2 cut(s) 162, 391
Fnu4HI GCNGC 8 cut(s) 6, 300, 447, 450, 517, 582, 624, 731
FokI GGATG 1 cut(s) 686
Fsp4HI GCNGC 8 cut(s) 6, 300, 447, 450, 517, 582, 624, 731
GluI GCNGC 8 cut(s) 6, 300, 447, 450, 517, 582, 624, 731
GsaI CCCAGC 1 cut(s) 456
GsuI CTGGAG 1 cut(s) 560
Hin1I GRCGYC 1 cut(s) 752
Hin1II CATG 2 cut(s) 166, 395
HinfI GANTC 3 cut(s) 49, 319, 723
HphI GGTGA 4 cut(s) 101, 550, 665, 760
Hpy166II GTNNAC 2 cut(s) 409, 710
Hpy188I TCNGA 4 cut(s) 48, 108, 423, 471
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 2 cut(s) 409, 710
Hpy99I CGWCG 1 cut(s) 598
HpyAV CCTTC 3 cut(s) 124, 315, 394
HpyCH4III ACNGT 2 cut(s) 415, 714
HpyCH4IV ACGT 3 cut(s) 567, 752, 819
HpyCH4V TGCA 6 cut(s) 302, 374, 449, 576, 740, 815
HpyF10VI GCNNNNNNNGC 1 cut(s) 455
HpyF3I CTNAG 3 cut(s) 141, 459, 470
HpySE526I ACGT 3 cut(s) 567, 752, 819
Hsp92I GRCGYC 1 cut(s) 752
Hsp92II CATG 2 cut(s) 166, 395
Kzo9I GATC 2 cut(s) 63, 597
LmnI GCTCC 2 cut(s) 13, 631
Lsp1109I GCAGC 5 cut(s) 286, 433, 461, 610, 742
LweI GCATC 2 cut(s) 361, 699
MaeII ACGT 3 cut(s) 567, 752, 819
MaeIII GTNAC 3 cut(s) 263, 664, 748
MalI GATC 2 cut(s) 65, 599
MbiI CCGCTC 1 cut(s) 584
MboI GATC 2 cut(s) 63, 597
MboII GAAGA 2 cut(s) 68, 251
MluCI AATT 4 cut(s) 78, 601, 735, 825
MlyI GAGTC 2 cut(s) 58, 717
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 3 cut(s) 454, 535, 844
Mph1103I ATGCAT 1 cut(s) 376
MseI TTAA 2 cut(s) 116, 839
MslI CAYNNNNRTG 1 cut(s) 179
MspA1I CMGCKG 1 cut(s) 452
MspR9I CCNGG 3 cut(s) 147, 539, 687
MvaI CCWGG 3 cut(s) 147, 539, 687
MwoI GCNNNNNNNGC 1 cut(s) 455
NdeII GATC 2 cut(s) 63, 597
NlaIII CATG 2 cut(s) 166, 395
NlaIV GGNNCC 2 cut(s) 172, 684
NmuCI GTSAC 1 cut(s) 748
NsiI ATGCAT 1 cut(s) 376
NspI RCATGY 1 cut(s) 166
PciI ACATGT 1 cut(s) 162
PfeI GAWTC 1 cut(s) 319
PflMI CCANNNNNTGG 1 cut(s) 82
PkrI GCNGC 8 cut(s) 7, 301, 448, 451, 518, 583, 625, 732
PleI GAGTC 2 cut(s) 57, 717
PpsI GAGTC 2 cut(s) 57, 717
PscI ACATGT 1 cut(s) 162
Psp6I CCWGG 3 cut(s) 145, 537, 685
PspFI CCCAGC 1 cut(s) 452
PspGI CCWGG 3 cut(s) 145, 537, 685
PspN4I GGNNCC 2 cut(s) 172, 684
PspPI GGNCC 2 cut(s) 171, 683
PstI CTGCAG 1 cut(s) 451
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 2 cut(s) 222, 528
RsaNI GTAC 2 cut(s) 221, 527
RseI CAYNNNNRTG 1 cut(s) 179
SaqAI TTAA 2 cut(s) 116, 839
SatI GCNGC 8 cut(s) 6, 300, 447, 450, 517, 582, 624, 731
Sau3AI GATC 2 cut(s) 63, 597
Sau96I GGNCC 2 cut(s) 171, 683
SchI GAGTC 2 cut(s) 58, 717
ScrFI CCNGG 3 cut(s) 147, 539, 687
SfaNI GCATC 2 cut(s) 361, 699
SfcI CTRYAG 1 cut(s) 447
SinI GGWCC 2 cut(s) 171, 683
SmiMI CAYNNNNRTG 1 cut(s) 179
Sse9I AATT 4 cut(s) 78, 601, 735, 825
SsiI CCGC 2 cut(s) 516, 582
StyD4I CCNGG 3 cut(s) 145, 537, 685
TaaI ACNGT 2 cut(s) 415, 714
TaiI ACGT 3 cut(s) 570, 755, 822
TaqI TCGA 3 cut(s) 430, 596, 721
TasI AATT 4 cut(s) 78, 601, 735, 825
TatI WGTACW 2 cut(s) 220, 526
TauI GCSGC 2 cut(s) 519, 584
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 2 cut(s) 116, 839
Tru9I TTAA 2 cut(s) 116, 839
TscAI CASTG 2 cut(s) 274, 418
TseFI GTSAC 1 cut(s) 748
TseI GCWGC 6 cut(s) 5, 299, 446, 449, 623, 730
Tsp45I GTSAC 1 cut(s) 748
TspDTI ATGAA 3 cut(s) 688, 707, 793
TspGWI ACGGA 1 cut(s) 582
TspRI CASTG 2 cut(s) 274, 418
Van91I CCANNNNNTGG 1 cut(s) 82
VpaK11BI GGWCC 2 cut(s) 171, 683
XapI RAATTY 1 cut(s) 78
XceI RCATGY 1 cut(s) 166
XcmI CCANNNNNNNNNTGG 1 cut(s) 83
ZraI GACGTC 1 cut(s) 753
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.