RLG00000035533

Mitochondrial biogenesis AIM24

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0010214
Physical Location & Seq
Reverse (-)
68073923 .. 68077008
3086 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035533

Sequence Viewer

Length: 1116 bp
ATGTGGTTACTTATCGGCACATTGATAAAGGGCTTGTGCATCAAGGGCAATAATACTGCTTTTATTCAACTGCTCAGGAGGATGGAACTGTCTCCTGATTGTAAGCCTGACGTAGTTGTTTATAACACCATCATTGACAGTCTTTGTAAGGACACATTAATCGCTGATGCATTTAACCTCTTTTCAGAAATGATCAGTAAGGATACACTTTGCAAGGAGGGGATGGCAGTGGAAGCAAAAGGCGTGATTGAAATGATGATTCAAAGACACCTTGAACCTAATGCTGTTACATATAACTCGCTTATGGATGGTTACTGTTTGAGAGGAGATATGGAGGAGGCAAGACAAGTCTTCAATCTAATGAGTCCACAAGATGCTATGATACCGTTTCAAATTTTGGGCGGTGAAGCTCAATTGGTGCAGATAATGTTGAAGCCGGAAGAAAAGGTTATAGCAAAGCCTGGTTCAATGTGCTTCATATCTGGGTTGATCGAAATGGAAAATGTTTTTGTTCCTGAAAATGAAGTAGGGGTGTGGCAGTGGCTTTTTGGCAAGACAGTGAGTAGCATAGTTTTTCACAATAACGGTCAAGGCGATGGGTTTGTTGGAATTGCTGCACCTTCTCTGGCCAGAATTCTCCCGGTTGATTTGGCAATGTTTGGTGGAGAGATTTTGTGCCAGCCAGATGCATTCCTTTGTTCCGTTAATGATGTTAAAGTCAGTAATACAGTTGACCAAAGGGCTCGTAATATTATTCCTGGTGCAGAGGGTTTTCTAAGACAGAAGCTATCTGGCCAAGGGCTTGCATTTATAATTGCAGGTGGATCTGTTGTACAGAAAAACCTTGAGGTGGGCGAGGTACTATCTGTTGATGTTTCTTGTATAGCAGCTGTGACTACAGTAGTCAACGGTGACAATCTAGTAACAGCTGTTTTAACCGGACCAGGCATTGTCTTCATTCAGAGTTTACCTTTTCATCGATTTTCTCAGCGTATTGCTAGGGCAGTTACATCACCAAACATGAGGGAAAATCCAAAGTTCGTCATGCAGATAGCCATTTTCTTTTTCTTGGCATATGTTGTGATTATATCTTTATTAATCTTGACCGATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIM24

Protein Analysis

372

Amino Acids

40.59

Weight (kDa)

4.99

Isoelectric Point (pI)

28.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 34 - 64 2.3e-12 PPR repeat
PPR_2 PF13041 36 - 67 3.6e-08 PPR repeat family
PPR_2 PF13041 69 - 106 7.5e-08 PPR repeat family
PPR_1 PF12854 90 - 121 1.2e-11 PPR repeat
PPR_2 PF13041 93 - 121 4.3e-08 PPR repeat family
PPR PF01535 96 - 121 5.2e-08 PPR repeat
AIM24 PF01987 130 - 323 2.2e-39 Mitochondrial biogenesis AIM24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 123, 812
AarI CACCTGC 1 cut(s) 809
Acc36I ACCTGC 1 cut(s) 809
AciI CCGC 1 cut(s) 402
AclWI GGATC 1 cut(s) 832
AcoI YGGCCR 2 cut(s) 627, 793
AcsI RAATTY 2 cut(s) 393, 633
AfaI GTAC 2 cut(s) 834, 861
AfiI CCNNNNNNNGG 1 cut(s) 850
AgsI TTSAA 8 cut(s) 68, 251, 263, 275, 355, 392, 433, 468
AjnI CCWGG 3 cut(s) 460, 757, 943
AluBI AGCT 4 cut(s) 410, 787, 890, 929
AluI AGCT 4 cut(s) 410, 787, 890, 929
Alw26I GTCTC 1 cut(s) 96
AlwI GGATC 1 cut(s) 832
AoxI GGCC 2 cut(s) 627, 793
ApeKI GCWGC 2 cut(s) 614, 887
ApoI RAATTY 2 cut(s) 393, 633
AseI ATTAAT 2 cut(s) 158, 1097
AspS9I GGNCC 1 cut(s) 941
AsuC2I CCSGG 1 cut(s) 641
AsuHPI GGTGA 3 cut(s) 416, 923, 1005
AvaII GGWCC 1 cut(s) 941
BalI TGGCCA 2 cut(s) 629, 795
BanII GRGCYC 1 cut(s) 745
BbsI GAAGAC 2 cut(s) 343, 946
BbvI GCAGC 2 cut(s) 601, 899
BccI CCATC 5 cut(s) 76, 137, 217, 302, 590
BciT130I CCWGG 3 cut(s) 462, 759, 945
BciVI GTATCC 1 cut(s) 196
BclI TGATCA 1 cut(s) 192
BcnI CCSGG 1 cut(s) 641
BcoDI GTCTC 1 cut(s) 96
BfaI CTAG 2 cut(s) 920, 999
BfmI CTRYAG 1 cut(s) 897
BfuAI ACCTGC 1 cut(s) 809
BfuI GTATCC 1 cut(s) 196
BisI GCNGC 2 cut(s) 615, 888
BlsI GCNGC 2 cut(s) 616, 889
Bme1390I CCNGG 4 cut(s) 462, 641, 759, 945
Bme18I GGWCC 1 cut(s) 941
BmgT120I GGNCC 1 cut(s) 941
BmrFI CCNGG 4 cut(s) 462, 641, 759, 945
BmsI GCATC 4 cut(s) 48, 157, 364, 676
BpiI GAAGAC 2 cut(s) 343, 946
Bpu10I CCTNAGC 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 866
BpuMI CCSGG 1 cut(s) 641
Bsa29I ATCGAT 1 cut(s) 979
BsaJI CCNNGG 1 cut(s) 796
BsaWI WCCGGW 1 cut(s) 938
Bsc4I CCNNNNNNNGG 1 cut(s) 850
Bse3DI GCAATG 1 cut(s) 660
BseBI CCWGG 3 cut(s) 462, 759, 945
BseCI ATCGAT 1 cut(s) 979
BseDI CCNNGG 1 cut(s) 796
BseGI GGATG 3 cut(s) 87, 228, 313
BseLI CCNNNNNNNGG 1 cut(s) 850
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 2 cut(s) 88, 1001
BseRI GAGGAG 2 cut(s) 339, 350
BseXI GCAGC 2 cut(s) 601, 899
BsgI GTGCAG 3 cut(s) 440, 600, 783
BshFI GGCC 2 cut(s) 629, 795
BshVI ATCGAT 1 cut(s) 979
BsiSI CCGG 3 cut(s) 437, 641, 939
BslI CCNNNNNNNGG 1 cut(s) 850
BsmAI GTCTC 1 cut(s) 96
BsmI GAATGC 1 cut(s) 689
BsnI GGCC 2 cut(s) 629, 795
Bsp1286I GDGCHC 1 cut(s) 745
Bsp1407I TGTACA 1 cut(s) 832
Bsp143I GATC 3 cut(s) 192, 489, 824
BspACI CCGC 1 cut(s) 402
BspANI GGCC 2 cut(s) 629, 795
BspCNI CTCAG 2 cut(s) 87, 1000
BspDI ATCGAT 1 cut(s) 979
BspMI ACCTGC 1 cut(s) 809
BspPI GGATC 1 cut(s) 832
BsrDI GCAATG 1 cut(s) 660
BsrGI TGTACA 1 cut(s) 832
BssECI CCNNGG 1 cut(s) 796
BssMI GATC 3 cut(s) 192, 489, 824
BssT1I CCWWGG 1 cut(s) 796
Bst2UI CCWGG 3 cut(s) 462, 759, 945
Bst4CI ACNGT 9 cut(s) 90, 140, 317, 387, 559, 587, 730, 901, 911
BstAUI TGTACA 1 cut(s) 832
BstC8I GCNNGC 2 cut(s) 680, 804
BstDEI CTNAG 3 cut(s) 74, 776, 987
BstF5I GGATG 3 cut(s) 87, 228, 313
BstKTI GATC 3 cut(s) 195, 492, 827
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 3 cut(s) 192, 489, 824
BstMWI GCNNNNNNNGC 2 cut(s) 45, 233
BstNI CCWGG 3 cut(s) 462, 759, 945
BstSCI CCNGG 4 cut(s) 460, 639, 757, 943
BstSFI CTRYAG 1 cut(s) 897
BstV1I GCAGC 2 cut(s) 601, 899
BstV2I GAAGAC 2 cut(s) 343, 946
BstX2I RGATCY 1 cut(s) 824
BstYI RGATCY 1 cut(s) 824
Bsu15I ATCGAT 1 cut(s) 979
BsuI GTATCC 1 cut(s) 196
BsuRI GGCC 2 cut(s) 629, 795
BsuTUI ATCGAT 1 cut(s) 979
BtgZI GCGATG 1 cut(s) 609
BtsCI GGATG 3 cut(s) 87, 228, 313
BtsI GCAGTG 2 cut(s) 234, 545
BtsIMutI CAGTG 3 cut(s) 234, 545, 564
BveI ACCTGC 1 cut(s) 809
Cac8I GCNNGC 2 cut(s) 680, 804
Cfr13I GGNCC 1 cut(s) 941
ClaI ATCGAT 1 cut(s) 979
Csp6I GTAC 2 cut(s) 833, 860
CviAII CATG 2 cut(s) 1021, 1045
CviQI GTAC 2 cut(s) 833, 860
DdeI CTNAG 3 cut(s) 74, 776, 987
DpnI GATC 3 cut(s) 194, 491, 826
DpnII GATC 3 cut(s) 192, 489, 824
EaeI YGGCCR 2 cut(s) 627, 793
Eco130I CCWWGG 1 cut(s) 796
Eco24I GRGCYC 1 cut(s) 745
Eco47I GGWCC 1 cut(s) 941
EcoRI GAATTC 1 cut(s) 633
EcoRII CCWGG 3 cut(s) 460, 757, 943
EcoT14I CCWWGG 1 cut(s) 796
EcoT22I ATGCAT 2 cut(s) 172, 691
EcoT38I GRGCYC 1 cut(s) 745
ErhI CCWWGG 1 cut(s) 796
FaeI CATG 2 cut(s) 1024, 1048
FatI CATG 2 cut(s) 1020, 1044
FauNDI CATATG 1 cut(s) 1075
FbaI TGATCA 1 cut(s) 192
Fnu4HI GCNGC 2 cut(s) 615, 888
FokI GGATG 3 cut(s) 94, 235, 320
FriOI GRGCYC 1 cut(s) 745
Fsp4HI GCNGC 2 cut(s) 615, 888
FspBI CTAG 2 cut(s) 920, 999
GluI GCNGC 2 cut(s) 615, 888
HaeIII GGCC 2 cut(s) 629, 795
HapII CCGG 3 cut(s) 437, 641, 939
Hin1II CATG 2 cut(s) 1024, 1048
HincII GTYRAC 2 cut(s) 733, 907
HindII GTYRAC 2 cut(s) 733, 907
HinfI GANTC 2 cut(s) 259, 364
HpaII CCGG 3 cut(s) 437, 641, 939
HphI GGTGA 3 cut(s) 416, 923, 1005
Hpy166II GTNNAC 4 cut(s) 368, 733, 907, 968
Hpy188I TCNGA 2 cut(s) 187, 963
Hpy188III TCNNGA 4 cut(s) 76, 95, 515, 1102
Hpy8I GTNNAC 4 cut(s) 368, 733, 907, 968
HpyAV CCTTC 1 cut(s) 630
HpyCH4III ACNGT 9 cut(s) 90, 140, 317, 387, 559, 587, 730, 901, 911
HpyCH4IV ACGT 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 233
HpyF3I CTNAG 3 cut(s) 74, 776, 987
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 2 cut(s) 1024, 1048
Ksp22I TGATCA 1 cut(s) 192
Kzo9I GATC 3 cut(s) 192, 489, 824
Lsp1109I GCAGC 2 cut(s) 601, 899
LweI GCATC 4 cut(s) 48, 157, 364, 676
MaeI CTAG 2 cut(s) 920, 999
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 7 cut(s) 6, 286, 311, 892, 911, 922, 1006
MalI GATC 3 cut(s) 194, 491, 826
MboI GATC 3 cut(s) 192, 489, 824
MboII GAAGA 3 cut(s) 343, 452, 946
MfeI CAATTG 1 cut(s) 413
MflI RGATCY 1 cut(s) 824
MhlI GDGCHC 1 cut(s) 745
MlsI TGGCCA 2 cut(s) 629, 795
MluCI AATT 5 cut(s) 393, 413, 609, 633, 813
MluNI TGGCCA 2 cut(s) 629, 795
MlyI GAGTC 1 cut(s) 373
MmeI TCCRAC 1 cut(s) 586
Mox20I TGGCCA 2 cut(s) 629, 795
Mph1103I ATGCAT 2 cut(s) 172, 691
MscI TGGCCA 2 cut(s) 629, 795
MseI TTAA 6 cut(s) 158, 174, 705, 714, 935, 1097
Msp20I TGGCCA 2 cut(s) 629, 795
MspA1I CMGCKG 2 cut(s) 890, 929
MspI CCGG 3 cut(s) 437, 641, 939
MspR9I CCNGG 4 cut(s) 462, 641, 759, 945
MunI CAATTG 1 cut(s) 413
Mva1269I GAATGC 1 cut(s) 689
MvaI CCWGG 3 cut(s) 462, 759, 945
MwoI GCNNNNNNNGC 2 cut(s) 45, 233
NciI CCSGG 1 cut(s) 641
NdeI CATATG 1 cut(s) 1075
NdeII GATC 3 cut(s) 192, 489, 824
NlaIII CATG 2 cut(s) 1024, 1048
NmuCI GTSAC 2 cut(s) 892, 911
NsiI ATGCAT 2 cut(s) 172, 691
PaqCI CACCTGC 1 cut(s) 809
PcsI WCGNNNNNNNCGW 1 cut(s) 591
PctI GAATGC 1 cut(s) 689
PfeI GAWTC 1 cut(s) 259
PkrI GCNGC 2 cut(s) 616, 889
PleI GAGTC 1 cut(s) 372
PpsI GAGTC 1 cut(s) 372
PshBI ATTAAT 2 cut(s) 158, 1097
PsiI TTATAA 2 cut(s) 123, 812
Psp6I CCWGG 3 cut(s) 460, 757, 943
PspGI CCWGG 3 cut(s) 460, 757, 943
PspPI GGNCC 1 cut(s) 941
PsuI RGATCY 1 cut(s) 824
PvuII CAGCTG 2 cut(s) 890, 929
RsaI GTAC 2 cut(s) 834, 861
RsaNI GTAC 2 cut(s) 833, 860
SaqAI TTAA 6 cut(s) 158, 174, 705, 714, 935, 1097
SatI GCNGC 2 cut(s) 615, 888
Sau3AI GATC 3 cut(s) 192, 489, 824
Sau96I GGNCC 1 cut(s) 941
SchI GAGTC 1 cut(s) 373
ScrFI CCNGG 4 cut(s) 462, 641, 759, 945
SduI GDGCHC 1 cut(s) 745
SfaNI GCATC 4 cut(s) 48, 157, 364, 676
SfcI CTRYAG 1 cut(s) 897
SinI GGWCC 1 cut(s) 941
SmlI CTYRAG 1 cut(s) 845
SmoI CTYRAG 1 cut(s) 845
Sse9I AATT 5 cut(s) 393, 413, 609, 633, 813
SsiI CCGC 1 cut(s) 402
SspI AATATT 1 cut(s) 751
SspMI CTAG 2 cut(s) 920, 999
StyD4I CCNGG 4 cut(s) 460, 639, 757, 943
StyI CCWWGG 1 cut(s) 796
TaaI ACNGT 9 cut(s) 90, 140, 317, 387, 559, 587, 730, 901, 911
TaiI ACGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 492, 979
TasI AATT 5 cut(s) 393, 413, 609, 633, 813
TatI WGTACW 1 cut(s) 832
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 6 cut(s) 158, 174, 705, 714, 935, 1097
Tru9I TTAA 6 cut(s) 158, 174, 705, 714, 935, 1097
TscAI CASTG 3 cut(s) 234, 545, 564
TseFI GTSAC 2 cut(s) 892, 911
TseI GCWGC 2 cut(s) 614, 887
Tsp45I GTSAC 2 cut(s) 892, 911
TspDTI ATGAA 4 cut(s) 466, 537, 946, 965
TspGWI ACGGA 1 cut(s) 691
TspRI CASTG 3 cut(s) 234, 545, 564
VpaK11BI GGWCC 1 cut(s) 941
VspI ATTAAT 2 cut(s) 158, 1097
XapI RAATTY 2 cut(s) 393, 633
XspI CTAG 2 cut(s) 920, 999
Zsp2I ATGCAT 2 cut(s) 172, 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.