Prupe.5G065700_v2.0.a1

Mitochondrial biogenesis AIM24

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0010214
Physical Location & Seq
Forward (+)
8026847 .. 8032134
5288 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G065700.1

Sequence Viewer

Length: 846 bp
ATGGCTGCACCGTTTTTCTCTACGCCTTTTCAGCCTTACGTGTACCAGAGTCAACAAGATGCTGTGGTACCTTTTCAAATTTTAGGTGGTGAAGCTCAACTGGTTCAGATAATGTTGAAGCCAGAAGAAAAGGTTATTGCGAAGCCTGGTTCAATGTGCTTCATGTCTGGGTCGATTGAGATGGAAAATGTTTTTGTTCCTGAAAATGAAGGAGGCATGTGGCAGTGGCTTTTTGGGAAGACAGTCAGCAGCATAACTTTTCGTAATGCTGGTCAAGGTGATGGGTTTGTTGGGATTGGCGCACCTACTCTTGCAAGAGTTCTCCCGATTGATTTGGCTATGTTTGGTGGAGAGATTTTGTGCCAGCCAGATGCTTTCCTTTGTTCTGTCAGTGATGTTAAAGTCAGTAACACAATTGATCAAAGGGCACGTAATGTTATTCCTGGTCCAGAGGGATTTCTAAGACAGAAGCTGTCTGGCCGAGGTCTCGCATTTATACTTGGAGGTGGATCTGTTGTACAGAAAAATCTTGAGGTGGGCGAAGTACTATCTGTTGATGTGTCTTGTATAGCTGCCGTGACTGGAACAGTTAATATCCAAATCAAATTCAATGGTACCATGAGAAGAGCACTGTTTGGCAGTGACAATCTGGTAACGGCTGTTCTAACCGGGCCAGGCATCGTCTTCATTCAGAGTTTACCTTTTCATCGATTTTCTCAGCGCATTGCCAGGGCGGTTACATCCCCAAACATGAGGGAAAATCCAAAGTTCTACGTGCAGATAGCCATTTTCTTTTTTCTGGCATATGTTGTGATTGTATCTTCCTTAATCTTGACTGATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIM24

Protein Analysis

282

Amino Acids

30.47

Weight (kDa)

6.6

Isoelectric Point (pI)

37.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 67, 614
AccB1I GGYRCC 2 cut(s) 67, 614
AciI CCGC 1 cut(s) 734
AclWI GGATC 1 cut(s) 517
AcoI YGGCCR 1 cut(s) 478
AcsI RAATTY 2 cut(s) 78, 605
AfaI GTAC 5 cut(s) 44, 69, 519, 546, 616
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 4 cut(s) 77, 118, 153, 610
AjnI CCWGG 4 cut(s) 145, 442, 673, 728
AluBI AGCT 3 cut(s) 95, 472, 572
AluI AGCT 3 cut(s) 95, 472, 572
Alw21I GWGCWC 1 cut(s) 631
Alw26I GTCTC 1 cut(s) 491
AlwI GGATC 1 cut(s) 517
AlwNI CAGNNNCTG 1 cut(s) 472
AoxI GGCC 2 cut(s) 478, 671
ApeKI GCWGC 3 cut(s) 5, 249, 572
ApoI RAATTY 2 cut(s) 78, 605
Asp718I GGTACC 2 cut(s) 67, 614
AspLEI GCGC 2 cut(s) 302, 723
AspS9I GGNCC 2 cut(s) 446, 671
AsuC2I CCSGG 1 cut(s) 670
AsuHPI GGTGA 2 cut(s) 101, 290
AvaII GGWCC 1 cut(s) 446
BaeGI GKGCMC 1 cut(s) 430
BanI GGYRCC 2 cut(s) 67, 614
BbsI GAAGAC 2 cut(s) 245, 676
Bbv12I GWGCWC 1 cut(s) 631
BbvI GCAGC 2 cut(s) 261, 559
BccI CCATC 2 cut(s) 175, 275
BceAI ACGGC 2 cut(s) 560, 672
BciT130I CCWGG 4 cut(s) 147, 444, 675, 730
BclI TGATCA 1 cut(s) 418
BcnI CCSGG 1 cut(s) 670
BcoDI GTCTC 1 cut(s) 491
BisI GCNGC 3 cut(s) 6, 250, 573
BlsI GCNGC 3 cut(s) 7, 251, 574
BmcAI AGTACT 1 cut(s) 546
Bme1390I CCNGG 5 cut(s) 147, 444, 670, 675, 730
Bme18I GGWCC 1 cut(s) 446
BmgT120I GGNCC 2 cut(s) 446, 671
BmiI GGNNCC 2 cut(s) 69, 616
BmrFI CCNGG 5 cut(s) 147, 444, 670, 675, 730
BmsI GCATC 3 cut(s) 49, 361, 687
BpiI GAAGAC 2 cut(s) 245, 676
BpuEI CTTGAG 1 cut(s) 551
BpuMI CCSGG 1 cut(s) 670
Bsa29I ATCGAT 1 cut(s) 709
BsaAI YACGTR 3 cut(s) 40, 431, 775
BsaI GGTCTC 1 cut(s) 491
BsaJI CCNNGG 2 cut(s) 481, 729
Bse1I ACTGG 2 cut(s) 105, 586
Bse3DI GCAATG 1 cut(s) 723
BseBI CCWGG 4 cut(s) 147, 444, 675, 730
BseCI ATCGAT 1 cut(s) 709
BseDI CCNNGG 2 cut(s) 481, 729
BseGI GGATG 1 cut(s) 740
BseMI GCAATG 1 cut(s) 723
BseMII CTCAG 1 cut(s) 731
BseNI ACTGG 2 cut(s) 105, 586
BseSI GKGCMC 1 cut(s) 430
BseXI GCAGC 2 cut(s) 261, 559
BsgI GTGCAG 1 cut(s) 797
BshFI GGCC 2 cut(s) 480, 673
BshNI GGYRCC 2 cut(s) 67, 614
BshVI ATCGAT 1 cut(s) 709
BsiHKAI GWGCWC 1 cut(s) 631
BsiSI CCGG 1 cut(s) 669
BsmAI GTCTC 1 cut(s) 491
BsnI GGCC 2 cut(s) 480, 673
Bso31I GGTCTC 1 cut(s) 491
Bsp1286I GDGCHC 2 cut(s) 430, 631
Bsp1407I TGTACA 1 cut(s) 517
Bsp143I GATC 2 cut(s) 418, 509
BspACI CCGC 1 cut(s) 734
BspANI GGCC 2 cut(s) 480, 673
BspCNI CTCAG 1 cut(s) 730
BspDI ATCGAT 1 cut(s) 709
BspLI GGNNCC 2 cut(s) 69, 616
BspPI GGATC 1 cut(s) 517
BspQI GCTCTTC 1 cut(s) 619
BspT107I GGYRCC 2 cut(s) 67, 614
BspTNI GGTCTC 1 cut(s) 491
BsrDI GCAATG 1 cut(s) 723
BsrGI TGTACA 1 cut(s) 517
BsrI ACTGG 2 cut(s) 105, 586
BssECI CCNNGG 2 cut(s) 481, 729
BssMI GATC 2 cut(s) 418, 509
Bst2UI CCWGG 4 cut(s) 147, 444, 675, 730
Bst4CI ACNGT 4 cut(s) 12, 244, 589, 633
Bst6I CTCTTC 1 cut(s) 619
BstAUI TGTACA 1 cut(s) 517
BstBAI YACGTR 3 cut(s) 40, 431, 775
BstC8I GCNNGC 1 cut(s) 365
BstDEI CTNAG 2 cut(s) 461, 717
BstF5I GGATG 1 cut(s) 740
BstHHI GCGC 2 cut(s) 302, 723
BstKTI GATC 2 cut(s) 421, 512
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 2 cut(s) 418, 509
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNI CCWGG 4 cut(s) 147, 444, 675, 730
BstNSI RCATGY 1 cut(s) 220
BstSCI CCNGG 5 cut(s) 145, 442, 668, 673, 728
BstSLI GKGCMC 1 cut(s) 430
BstV1I GCAGC 2 cut(s) 261, 559
BstV2I GAAGAC 2 cut(s) 245, 676
BstX2I RGATCY 1 cut(s) 509
BstYI RGATCY 1 cut(s) 509
Bsu15I ATCGAT 1 cut(s) 709
BsuRI GGCC 2 cut(s) 480, 673
BsuTUI ATCGAT 1 cut(s) 709
BtsCI GGATG 1 cut(s) 740
BtsI GCAGTG 2 cut(s) 230, 646
BtsIMutI CAGTG 4 cut(s) 230, 397, 629, 646
Cac8I GCNNGC 1 cut(s) 365
CaiI CAGNNNCTG 1 cut(s) 472
CfoI GCGC 2 cut(s) 302, 723
Cfr13I GGNCC 2 cut(s) 446, 671
ClaI ATCGAT 1 cut(s) 709
Csp6I GTAC 5 cut(s) 43, 68, 518, 545, 615
CviAII CATG 4 cut(s) 163, 217, 619, 751
CviQI GTAC 5 cut(s) 43, 68, 518, 545, 615
DdeI CTNAG 2 cut(s) 461, 717
DpnI GATC 2 cut(s) 420, 511
DpnII GATC 2 cut(s) 418, 509
EaeI YGGCCR 1 cut(s) 478
Eam1104I CTCTTC 1 cut(s) 619
EarI CTCTTC 1 cut(s) 619
Eco31I GGTCTC 1 cut(s) 491
Eco47I GGWCC 1 cut(s) 446
EcoRII CCWGG 4 cut(s) 145, 442, 673, 728
FaeI CATG 4 cut(s) 166, 220, 622, 754
FatI CATG 4 cut(s) 162, 216, 618, 750
FauNDI CATATG 1 cut(s) 805
FbaI TGATCA 1 cut(s) 418
Fnu4HI GCNGC 3 cut(s) 6, 250, 573
FokI GGATG 1 cut(s) 727
Fsp4HI GCNGC 3 cut(s) 6, 250, 573
GlaI GCGC 2 cut(s) 301, 722
GluI GCNGC 3 cut(s) 6, 250, 573
HaeIII GGCC 2 cut(s) 480, 673
HapII CCGG 1 cut(s) 669
HhaI GCGC 2 cut(s) 302, 723
Hin1II CATG 4 cut(s) 166, 220, 622, 754
Hin6I GCGC 2 cut(s) 300, 721
HinP1I GCGC 2 cut(s) 300, 721
HincII GTYRAC 1 cut(s) 53
HindII GTYRAC 1 cut(s) 53
HinfI GANTC 1 cut(s) 49
HpaII CCGG 1 cut(s) 669
HphI GGTGA 2 cut(s) 101, 290
Hpy166II GTNNAC 3 cut(s) 43, 53, 698
Hpy188I TCNGA 2 cut(s) 108, 693
Hpy188III TCNNGA 5 cut(s) 200, 325, 449, 530, 832
Hpy8I GTNNAC 3 cut(s) 43, 53, 698
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 4 cut(s) 12, 244, 589, 633
HpyCH4IV ACGT 3 cut(s) 39, 430, 774
HpyCH4V TGCA 3 cut(s) 8, 314, 778
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 2 cut(s) 461, 717
HpySE526I ACGT 3 cut(s) 39, 430, 774
Hsp92II CATG 4 cut(s) 166, 220, 622, 754
HspAI GCGC 2 cut(s) 300, 721
KpnI GGTACC 2 cut(s) 71, 618
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 2 cut(s) 418, 509
LguI GCTCTTC 1 cut(s) 619
Lsp1109I GCAGC 2 cut(s) 261, 559
LweI GCATC 3 cut(s) 49, 361, 687
MaeII ACGT 3 cut(s) 39, 430, 774
MaeIII GTNAC 5 cut(s) 407, 577, 641, 652, 736
MalI GATC 2 cut(s) 420, 511
MboI GATC 2 cut(s) 418, 509
MboII GAAGA 5 cut(s) 137, 250, 636, 676, 813
MfeI CAATTG 1 cut(s) 414
MflI RGATCY 1 cut(s) 509
MhlI GDGCHC 2 cut(s) 430, 631
MluCI AATT 3 cut(s) 78, 414, 605
MlyI GAGTC 1 cut(s) 58
MnlI CCTC 6 cut(s) 206, 445, 476, 497, 526, 747
MseI TTAA 3 cut(s) 399, 591, 827
MspI CCGG 1 cut(s) 669
MspR9I CCNGG 5 cut(s) 147, 444, 670, 675, 730
MunI CAATTG 1 cut(s) 414
MvaI CCWGG 4 cut(s) 147, 444, 675, 730
MwoI GCNNNNNNNGC 1 cut(s) 31
NciI CCSGG 1 cut(s) 670
NdeI CATATG 1 cut(s) 805
NdeII GATC 2 cut(s) 418, 509
NlaIII CATG 4 cut(s) 166, 220, 622, 754
NlaIV GGNNCC 2 cut(s) 69, 616
NmeAIII GCCGAG 1 cut(s) 506
NmuCI GTSAC 2 cut(s) 577, 641
NspI RCATGY 1 cut(s) 220
PciSI GCTCTTC 1 cut(s) 619
PkrI GCNGC 3 cut(s) 7, 251, 574
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
Ppu21I YACGTR 3 cut(s) 40, 431, 775
Psp6I CCWGG 4 cut(s) 145, 442, 673, 728
PspGI CCWGG 4 cut(s) 145, 442, 673, 728
PspN4I GGNNCC 2 cut(s) 69, 616
PspPI GGNCC 2 cut(s) 446, 671
PsrI GAACNNNNNNTAC 2 cut(s) 645, 677
PstNI CAGNNNCTG 1 cut(s) 472
PsuI RGATCY 1 cut(s) 509
RsaI GTAC 5 cut(s) 44, 69, 519, 546, 616
RsaNI GTAC 5 cut(s) 43, 68, 518, 545, 615
SapI GCTCTTC 1 cut(s) 619
SaqAI TTAA 3 cut(s) 399, 591, 827
SatI GCNGC 3 cut(s) 6, 250, 573
Sau3AI GATC 2 cut(s) 418, 509
Sau96I GGNCC 2 cut(s) 446, 671
ScaI AGTACT 1 cut(s) 546
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 5 cut(s) 147, 444, 670, 675, 730
SduI GDGCHC 2 cut(s) 430, 631
SfaNI GCATC 3 cut(s) 49, 361, 687
SinI GGWCC 1 cut(s) 446
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
Sse9I AATT 3 cut(s) 78, 414, 605
SsiI CCGC 1 cut(s) 734
StyD4I CCNGG 5 cut(s) 145, 442, 668, 673, 728
TaaI ACNGT 4 cut(s) 12, 244, 589, 633
TaiI ACGT 3 cut(s) 42, 433, 777
TaqI TCGA 2 cut(s) 173, 709
TasI AATT 3 cut(s) 78, 414, 605
TatI WGTACW 2 cut(s) 517, 544
Tru1I TTAA 3 cut(s) 399, 591, 827
Tru9I TTAA 3 cut(s) 399, 591, 827
TscAI CASTG 4 cut(s) 230, 397, 636, 646
TseFI GTSAC 2 cut(s) 577, 641
TseI GCWGC 3 cut(s) 5, 249, 572
Tsp45I GTSAC 2 cut(s) 577, 641
TspDTI ATGAA 4 cut(s) 151, 222, 676, 695
TspRI CASTG 4 cut(s) 230, 397, 636, 646
VpaK11BI GGWCC 1 cut(s) 446
XapI RAATTY 2 cut(s) 78, 605
XceI RCATGY 1 cut(s) 220
ZrmI AGTACT 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.