Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015273.1

Orthogroup ID

OG0010214

Physical Location & Seq

Genomic Coordinates Forward (+)

34142 .. 38999

Gene Structure 4858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015273.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atggctgcaccgttcttctcaacgccgtttcagccctacgtgtaccagagtccacaagatgctatgataccgtttcaaattctgggtggtgaagctcaattggtgcagataatgttgaagccggaagaaaaggttatagcaaagcctggttcaatgtgtttcatgtccgggtcgatcgaaatggaaaatgtttttgttcctgaaaatgaagtaggggtgtggcagtggctttttggcaagacagtgagtagcatagtttttcacaataacggtcaaggcgatggatttgttggaattgctgcaccttctctggccagaattctcccgattgatttggcaatgtttggcggagagattttgtgccagccagatgcattcctttgttccgttaatgatgttaaagtcagtaatacagttgaccaaagggctcgtaatattattcctggtgcagagggttttctaagacagaagttatctggcgaagggcttgcatttataattgcaggtggatctgttgtacagaaaaatcttgaggtgggcgaggtactatctgttgatgtttcttgtatagcagctgtgactacaacagtcaacgtccaaatcaaatacaatgggcccatgagaagagcagtgtttggtggtgacaatctagtaacagctgttttaaccggaccaggcattgtcttcattcagagtttaccttttcatcgattttctcagcgtattgctagggcagttacatcaccaaacatgagggaaaatccaaagttcgtcatgcagatagccattttctttttcttggcatatgttgtgattatatcttctttaatcttgaccgatgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIM24

Protein Analysis

281

Amino Acids

30.5

Weight (kDa)

5.46

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17420 AT5G47420
fragaria_vesca	FvH4_5g19370 FvH4_5g19370
malus_domestica	MD04G1059900.v1.1 MD06G1053000.v1.1
prunus_persica	Prupe.5G065700_v2.0.a1
pyrus_communis	pycom04g05340 pycom06g04450
rosa_chinensis	RchiOBHm_Chr7g0203831 RchiOBHm_Chr7g0203871
rosa_laevigata	RLG00000003502 RLG00000035533
rosa_multiflora	Rmu_sc0015273.1_g000012
rosa_roxburghii	Rroxscaffold_3G00253490
rosa_rugosa	Rorug07G0079000 Rorug07G0079000
rosa_samantha	Rh7CG221200 Rh7DG215800 Rh7DG216000
rosa_wichuraiana	Rw7G018210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	497
AarI	CACCTGC	1 cut(s)	494
Acc36I	ACCTGC	1 cut(s)	494
AciI	CCGC	1 cut(s)	348
AclWI	GGATC	1 cut(s)	517
AcoI	YGGCCR	1 cut(s)	312
AcsI	RAATTY	2 cut(s)	78, 318
AfaI	GTAC	3 cut(s)	44, 519, 546
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	3 cut(s)	77, 118, 153
AjnI	CCWGG	3 cut(s)	145, 442, 673
AluBI	AGCT	3 cut(s)	95, 575, 659
AluI	AGCT	3 cut(s)	95, 575, 659
AlwI	GGATC	1 cut(s)	517
AoxI	GGCC	2 cut(s)	312, 614
ApaI	GGGCCC	1 cut(s)	618
ApeKI	GCWGC	3 cut(s)	5, 299, 572
ApoI	RAATTY	2 cut(s)	78, 318
AspS9I	GGNCC	3 cut(s)	614, 615, 671
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	3 cut(s)	101, 653, 735
AvaII	GGWCC	1 cut(s)	671
BaeGI	GKGCMC	1 cut(s)	618
BalI	TGGCCA	1 cut(s)	314
BanII	GRGCYC	2 cut(s)	430, 618
BbsI	GAAGAC	1 cut(s)	676
BbvI	GCAGC	2 cut(s)	286, 584
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	1 cut(s)	10
BcgI	CGANNNNNNTGC	2 cut(s)	470, 504
BciT130I	CCWGG	3 cut(s)	147, 444, 675
BcnI	CCSGG	1 cut(s)	169
BfaI	CTAG	2 cut(s)	650, 729
BfuAI	ACCTGC	1 cut(s)	494
BisI	GCNGC	3 cut(s)	6, 300, 573
BlsI	GCNGC	3 cut(s)	7, 301, 574
Bme1390I	CCNGG	4 cut(s)	147, 169, 444, 675
Bme18I	GGWCC	1 cut(s)	671
BmgT120I	GGNCC	3 cut(s)	614, 615, 671
BmiI	GGNNCC	1 cut(s)	616
BmrFI	CCNGG	4 cut(s)	147, 169, 444, 675
BmsI	GCATC	2 cut(s)	49, 361
BpiI	GAAGAC	1 cut(s)	676
BpuEI	CTTGAG	1 cut(s)	551
BpuMI	CCSGG	1 cut(s)	169
Bsa29I	ATCGAT	1 cut(s)	709
BsaAI	YACGTR	1 cut(s)	40
BsaWI	WCCGGW	1 cut(s)	668
Bse3DI	GCAATG	1 cut(s)	345
BseBI	CCWGG	3 cut(s)	147, 444, 675
BseCI	ATCGAT	1 cut(s)	709
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	1 cut(s)	731
BseSI	GKGCMC	1 cut(s)	618
BseXI	GCAGC	2 cut(s)	286, 584
BsgI	GTGCAG	3 cut(s)	125, 285, 468
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	314, 616
BshVI	ATCGAT	1 cut(s)	709
BsiEI	CGRYCG	1 cut(s)	177
BsiSI	CCGG	3 cut(s)	122, 168, 669
BsmI	GAATGC	1 cut(s)	374
BsnI	GGCC	2 cut(s)	314, 616
Bsp120I	GGGCCC	1 cut(s)	614
Bsp1286I	GDGCHC	2 cut(s)	430, 618
Bsp1407I	TGTACA	1 cut(s)	517
Bsp143I	GATC	2 cut(s)	174, 509
BspACI	CCGC	1 cut(s)	348
BspANI	GGCC	2 cut(s)	314, 616
BspCNI	CTCAG	1 cut(s)	730
BspDI	ATCGAT	1 cut(s)	709
BspLI	GGNNCC	1 cut(s)	616
BspMI	ACCTGC	1 cut(s)	494
BspPI	GGATC	1 cut(s)	517
BspQI	GCTCTTC	1 cut(s)	619
BsrDI	GCAATG	1 cut(s)	345
BsrGI	TGTACA	1 cut(s)	517
BssMI	GATC	2 cut(s)	174, 509
Bst2UI	CCWGG	3 cut(s)	147, 444, 675
Bst4CI	ACNGT	6 cut(s)	12, 72, 244, 272, 415, 589
Bst6I	CTCTTC	1 cut(s)	619
BstAUI	TGTACA	1 cut(s)	517
BstBAI	YACGTR	1 cut(s)	40
BstC8I	GCNNGC	2 cut(s)	365, 489
BstDEI	CTNAG	2 cut(s)	461, 717
BstKTI	GATC	2 cut(s)	177, 512
BstMBI	GATC	2 cut(s)	174, 509
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNI	CCWGG	3 cut(s)	147, 444, 675
BstSCI	CCNGG	4 cut(s)	145, 167, 442, 673
BstSLI	GKGCMC	1 cut(s)	618
BstV1I	GCAGC	2 cut(s)	286, 584
BstV2I	GAAGAC	1 cut(s)	676
BstX2I	RGATCY	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	509
Bsu15I	ATCGAT	1 cut(s)	709
BsuRI	GGCC	2 cut(s)	314, 616
BsuTUI	ATCGAT	1 cut(s)	709
BtgZI	GCGATG	1 cut(s)	294
BtsI	GCAGTG	2 cut(s)	230, 636
BtsIMutI	CAGTG	3 cut(s)	230, 249, 636
BveI	ACCTGC	1 cut(s)	494
Cac8I	GCNNGC	2 cut(s)	365, 489
Cfr13I	GGNCC	3 cut(s)	614, 615, 671
ClaI	ATCGAT	1 cut(s)	709
Csp6I	GTAC	3 cut(s)	43, 518, 545
CviAII	CATG	4 cut(s)	163, 619, 751, 775
CviQI	GTAC	3 cut(s)	43, 518, 545
DdeI	CTNAG	2 cut(s)	461, 717
DpnI	GATC	2 cut(s)	176, 511
DpnII	GATC	2 cut(s)	174, 509
EaeI	YGGCCR	1 cut(s)	312
Eam1104I	CTCTTC	1 cut(s)	619
EarI	CTCTTC	1 cut(s)	619
EciI	GGCGGA	1 cut(s)	363
Eco24I	GRGCYC	2 cut(s)	430, 618
Eco47I	GGWCC	1 cut(s)	671
EcoRI	GAATTC	1 cut(s)	318
EcoRII	CCWGG	3 cut(s)	145, 442, 673
EcoT22I	ATGCAT	1 cut(s)	376
EcoT38I	GRGCYC	2 cut(s)	430, 618
FaeI	CATG	4 cut(s)	166, 622, 754, 778
FatI	CATG	4 cut(s)	162, 618, 750, 774
FauNDI	CATATG	1 cut(s)	805
Fnu4HI	GCNGC	3 cut(s)	6, 300, 573
FriOI	GRGCYC	2 cut(s)	430, 618
Fsp4HI	GCNGC	3 cut(s)	6, 300, 573
FspBI	CTAG	2 cut(s)	650, 729
GluI	GCNGC	3 cut(s)	6, 300, 573
HaeIII	GGCC	2 cut(s)	314, 616
HapII	CCGG	3 cut(s)	122, 168, 669
Hin1II	CATG	4 cut(s)	166, 622, 754, 778
HincII	GTYRAC	2 cut(s)	418, 592
HindII	GTYRAC	2 cut(s)	418, 592
HinfI	GANTC	1 cut(s)	49
HpaII	CCGG	3 cut(s)	122, 168, 669
HphI	GGTGA	3 cut(s)	101, 653, 735
Hpy166II	GTNNAC	5 cut(s)	43, 53, 418, 592, 698
Hpy188I	TCNGA	1 cut(s)	693
Hpy188III	TCNNGA	4 cut(s)	200, 325, 530, 832
Hpy8I	GTNNAC	5 cut(s)	43, 53, 418, 592, 698
HpyAV	CCTTC	2 cut(s)	315, 476
HpyCH4III	ACNGT	6 cut(s)	12, 72, 244, 272, 415, 589
HpyCH4IV	ACGT	2 cut(s)	39, 594
HpyCH4V	TGCA	8 cut(s)	8, 106, 302, 374, 449, 491, 503, 778
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	2 cut(s)	461, 717
HpySE526I	ACGT	2 cut(s)	39, 594
Hsp92II	CATG	4 cut(s)	166, 622, 754, 778
Kzo9I	GATC	2 cut(s)	174, 509
LguI	GCTCTTC	1 cut(s)	619
Lsp1109I	GCAGC	2 cut(s)	286, 584
LweI	GCATC	2 cut(s)	49, 361
MaeI	CTAG	2 cut(s)	650, 729
MaeII	ACGT	2 cut(s)	39, 594
MaeIII	GTNAC	4 cut(s)	577, 641, 652, 736
MalI	GATC	2 cut(s)	176, 511
MboI	GATC	2 cut(s)	174, 509
MboII	GAAGA	5 cut(s)	7, 137, 636, 676, 813
MfeI	CAATTG	1 cut(s)	98
MflI	RGATCY	1 cut(s)	509
MhlI	GDGCHC	2 cut(s)	430, 618
MlsI	TGGCCA	1 cut(s)	314
MluCI	AATT	5 cut(s)	78, 98, 294, 318, 498
MluNI	TGGCCA	1 cut(s)	314
MlyI	GAGTC	1 cut(s)	58
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	4 cut(s)	445, 526, 535, 747
Mox20I	TGGCCA	1 cut(s)	314
Mph1103I	ATGCAT	1 cut(s)	376
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	4 cut(s)	390, 399, 665, 827
Msp20I	TGGCCA	1 cut(s)	314
MspA1I	CMGCKG	2 cut(s)	575, 659
MspI	CCGG	3 cut(s)	122, 168, 669
MspR9I	CCNGG	4 cut(s)	147, 169, 444, 675
MunI	CAATTG	1 cut(s)	98
Mva1269I	GAATGC	1 cut(s)	374
MvaI	CCWGG	3 cut(s)	147, 444, 675
MwoI	GCNNNNNNNGC	1 cut(s)	31
NciI	CCSGG	1 cut(s)	169
NdeI	CATATG	1 cut(s)	805
NdeII	GATC	2 cut(s)	174, 509
NlaIII	CATG	4 cut(s)	166, 622, 754, 778
NlaIV	GGNNCC	1 cut(s)	616
NmuCI	GTSAC	2 cut(s)	577, 641
NsiI	ATGCAT	1 cut(s)	376
PaqCI	CACCTGC	1 cut(s)	494
PciSI	GCTCTTC	1 cut(s)	619
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PctI	GAATGC	1 cut(s)	374
PkrI	GCNGC	3 cut(s)	7, 301, 574
Ple19I	CGATCG	1 cut(s)	177
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
Ppu21I	YACGTR	1 cut(s)	40
PsiI	TTATAA	1 cut(s)	497
Psp6I	CCWGG	3 cut(s)	145, 442, 673
PspGI	CCWGG	3 cut(s)	145, 442, 673
PspN4I	GGNNCC	1 cut(s)	616
PspOMI	GGGCCC	1 cut(s)	614
PspPI	GGNCC	3 cut(s)	614, 615, 671
PsuI	RGATCY	1 cut(s)	509
PvuI	CGATCG	1 cut(s)	177
PvuII	CAGCTG	2 cut(s)	575, 659
RsaI	GTAC	3 cut(s)	44, 519, 546
RsaNI	GTAC	3 cut(s)	43, 518, 545
SapI	GCTCTTC	1 cut(s)	619
SaqAI	TTAA	4 cut(s)	390, 399, 665, 827
SatI	GCNGC	3 cut(s)	6, 300, 573
Sau3AI	GATC	2 cut(s)	174, 509
Sau96I	GGNCC	3 cut(s)	614, 615, 671
SchI	GAGTC	1 cut(s)	58
ScrFI	CCNGG	4 cut(s)	147, 169, 444, 675
SduI	GDGCHC	2 cut(s)	430, 618
SfaNI	GCATC	2 cut(s)	49, 361
SinI	GGWCC	1 cut(s)	671
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
Sse9I	AATT	5 cut(s)	78, 98, 294, 318, 498
SsiI	CCGC	1 cut(s)	348
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	2 cut(s)	650, 729
StyD4I	CCNGG	4 cut(s)	145, 167, 442, 673
TaaI	ACNGT	6 cut(s)	12, 72, 244, 272, 415, 589
TaiI	ACGT	2 cut(s)	42, 597
TaqI	TCGA	3 cut(s)	173, 177, 709
TasI	AATT	5 cut(s)	78, 98, 294, 318, 498
TatI	WGTACW	1 cut(s)	517
Tru1I	TTAA	4 cut(s)	390, 399, 665, 827
Tru9I	TTAA	4 cut(s)	390, 399, 665, 827
TscAI	CASTG	3 cut(s)	230, 249, 636
TseFI	GTSAC	2 cut(s)	577, 641
TseI	GCWGC	3 cut(s)	5, 299, 572
Tsp45I	GTSAC	2 cut(s)	577, 641
TspDTI	ATGAA	4 cut(s)	151, 222, 676, 695
TspGWI	ACGGA	1 cut(s)	376
TspRI	CASTG	3 cut(s)	230, 249, 636
VpaK11BI	GGWCC	1 cut(s)	671
XapI	RAATTY	2 cut(s)	78, 318
XspI	CTAG	2 cut(s)	650, 729
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.