Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0010214

Physical Location & Seq

Genomic Coordinates Reverse (-)

20806723 .. 20811820

Gene Structure 5098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG216000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCTGCACCGTTTTTCTCAACGCCGTTTCAGCCCTACGTGTACCAGAGTCCACAAGATGCCATGATACCGTTTCAAATTCTGGGCGGTGAAGCTCAACTGGTGCAGATAATGTTGAAGCCGGAAGAAAAGGTTATAGCAAAGCCTGGTTCAATGTGCTTCATGTCCGGGTCGATCAAAATGGAAAATGTTTTTGTTCCTGAAAATGAAGTAGGGGTGTGGCAGTGGCTTTTTGGCAAGACGATTGATTTGGCAATGTTTGGCGGAGAGATTTTGTGCCAGATGTGTTCCGTTAATGATGTTAAAGTCAGTAATAAAGTTGACCAAAGGGCTCGTAATATTATTCCTGGTGCAGAGGGTTTTCTAAGACAGAAGTTATCTGGCCAAGGGCTTGCATTTATAATTGCAGGTGGATCTGTTGTACAGAAAAATCTTGATGTGGGCGAGGTACTATCTGTTGATGTTTCTTGTATAGCAGCTGTGACTACAACAGTCAACGTCCAAATCAAATACAATGGGCCCATGAGAAGAGCAGTGTTTGGTGGTGACAATCTAGTAACAGCTGTTTTAACCGGACCAGGCATTGTCTTCATTCAGAGTTTACCTTTTCATCGATTTTCTCAGCGTATTGCTAGGGCAGTTACATCACCAAACATGAGGGAAAATCCAAAGTTCGTCATGCAGATAGCCATTTTCTTTTTCTTGGCATATGTTGTGATTATATCTTCTTTAATCTTGACCGATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIM24

Protein Analysis

249

Amino Acids

27.28

Weight (kDa)

8.34

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIM24	PF01987	25 - 84	5.7e-10	Mitochondrial biogenesis AIM24
AIM24	PF01987	95 - 201	1.6e-25	Mitochondrial biogenesis AIM24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17420 AT5G47420
fragaria_vesca	FvH4_5g19370 FvH4_5g19370
malus_domestica	MD04G1059900.v1.1 MD06G1053000.v1.1
prunus_persica	Prupe.5G065700_v2.0.a1
pyrus_communis	pycom04g05340 pycom06g04450
rosa_chinensis	RchiOBHm_Chr7g0203831 RchiOBHm_Chr7g0203871
rosa_laevigata	RLG00000003502 RLG00000035533
rosa_multiflora	Rmu_sc0015273.1_g000012
rosa_roxburghii	Rroxscaffold_3G00253490
rosa_rugosa	Rorug07G0079000 Rorug07G0079000
rosa_samantha	Rh7CG221200 Rh7DG215800 Rh7DG216000
rosa_wichuraiana	Rw7G018210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	401
AarI	CACCTGC	1 cut(s)	398
Acc36I	ACCTGC	1 cut(s)	398
AciI	CCGC	2 cut(s)	87, 264
AclWI	GGATC	1 cut(s)	421
AcoI	YGGCCR	1 cut(s)	382
AcsI	RAATTY	1 cut(s)	78
AfaI	GTAC	3 cut(s)	44, 423, 450
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	3 cut(s)	77, 118, 153
AjnI	CCWGG	3 cut(s)	145, 346, 577
AluBI	AGCT	3 cut(s)	95, 479, 563
AluI	AGCT	3 cut(s)	95, 479, 563
AlwI	GGATC	1 cut(s)	421
AoxI	GGCC	2 cut(s)	382, 518
ApaI	GGGCCC	1 cut(s)	522
ApeKI	GCWGC	2 cut(s)	5, 476
ApoI	RAATTY	1 cut(s)	78
ArsI	GACNNNNNNTTYG	2 cut(s)	232, 264
AspS9I	GGNCC	3 cut(s)	518, 519, 575
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	3 cut(s)	101, 557, 639
AvaII	GGWCC	1 cut(s)	575
BaeGI	GKGCMC	1 cut(s)	522
BalI	TGGCCA	1 cut(s)	384
BanII	GRGCYC	2 cut(s)	334, 522
BbsI	GAAGAC	1 cut(s)	580
BbvI	GCAGC	1 cut(s)	488
BceAI	ACGGC	1 cut(s)	10
BciT130I	CCWGG	3 cut(s)	147, 348, 579
BcnI	CCSGG	1 cut(s)	169
BfaI	CTAG	2 cut(s)	554, 633
BfuAI	ACCTGC	1 cut(s)	398
BisI	GCNGC	2 cut(s)	6, 477
BlsI	GCNGC	2 cut(s)	7, 478
Bme1390I	CCNGG	4 cut(s)	147, 169, 348, 579
Bme18I	GGWCC	1 cut(s)	575
BmgT120I	GGNCC	3 cut(s)	518, 519, 575
BmiI	GGNNCC	1 cut(s)	520
BmrFI	CCNGG	4 cut(s)	147, 169, 348, 579
BmsI	GCATC	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	580
BpuMI	CCSGG	1 cut(s)	169
Bsa29I	ATCGAT	1 cut(s)	613
BsaAI	YACGTR	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	385
BsaWI	WCCGGW	1 cut(s)	572
Bse1I	ACTGG	1 cut(s)	105
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	3 cut(s)	147, 348, 579
BseCI	ATCGAT	1 cut(s)	613
BseDI	CCNNGG	1 cut(s)	385
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	635
BseNI	ACTGG	1 cut(s)	105
BseSI	GKGCMC	1 cut(s)	522
BseXI	GCAGC	1 cut(s)	488
BsgI	GTGCAG	2 cut(s)	125, 372
BshFI	GGCC	2 cut(s)	384, 520
BshVI	ATCGAT	1 cut(s)	613
BsiSI	CCGG	3 cut(s)	122, 168, 573
BsnI	GGCC	2 cut(s)	384, 520
Bsp120I	GGGCCC	1 cut(s)	518
Bsp1286I	GDGCHC	2 cut(s)	334, 522
Bsp1407I	TGTACA	1 cut(s)	421
Bsp143I	GATC	2 cut(s)	174, 413
BspACI	CCGC	2 cut(s)	87, 264
BspANI	GGCC	2 cut(s)	384, 520
BspCNI	CTCAG	1 cut(s)	634
BspDI	ATCGAT	1 cut(s)	613
BspLI	GGNNCC	1 cut(s)	520
BspMI	ACCTGC	1 cut(s)	398
BspPI	GGATC	1 cut(s)	421
BspQI	GCTCTTC	1 cut(s)	523
BsrDI	GCAATG	1 cut(s)	261
BsrGI	TGTACA	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	385
BssMI	GATC	2 cut(s)	174, 413
BssT1I	CCWWGG	1 cut(s)	385
Bst2UI	CCWGG	3 cut(s)	147, 348, 579
Bst4CI	ACNGT	3 cut(s)	12, 72, 493
Bst6I	CTCTTC	1 cut(s)	523
BstAUI	TGTACA	1 cut(s)	421
BstBAI	YACGTR	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	2 cut(s)	365, 621
BstKTI	GATC	2 cut(s)	177, 416
BstMBI	GATC	2 cut(s)	174, 413
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNI	CCWGG	3 cut(s)	147, 348, 579
BstSCI	CCNGG	4 cut(s)	145, 167, 346, 577
BstSLI	GKGCMC	1 cut(s)	522
BstV1I	GCAGC	1 cut(s)	488
BstV2I	GAAGAC	1 cut(s)	580
BstX2I	RGATCY	1 cut(s)	413
BstYI	RGATCY	1 cut(s)	413
Bsu15I	ATCGAT	1 cut(s)	613
BsuRI	GGCC	2 cut(s)	384, 520
BsuTUI	ATCGAT	1 cut(s)	613
BtsI	GCAGTG	2 cut(s)	230, 540
BtsIMutI	CAGTG	2 cut(s)	230, 540
BveI	ACCTGC	1 cut(s)	398
Cac8I	GCNNGC	1 cut(s)	393
Cfr13I	GGNCC	3 cut(s)	518, 519, 575
ClaI	ATCGAT	1 cut(s)	613
Csp6I	GTAC	3 cut(s)	43, 422, 449
CviAII	CATG	5 cut(s)	64, 163, 523, 655, 679
CviQI	GTAC	3 cut(s)	43, 422, 449
DdeI	CTNAG	2 cut(s)	365, 621
DpnI	GATC	2 cut(s)	176, 415
DpnII	GATC	2 cut(s)	174, 413
EaeI	YGGCCR	1 cut(s)	382
Eam1104I	CTCTTC	1 cut(s)	523
EarI	CTCTTC	1 cut(s)	523
EciI	GGCGGA	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	385
Eco24I	GRGCYC	2 cut(s)	334, 522
Eco47I	GGWCC	1 cut(s)	575
EcoRII	CCWGG	3 cut(s)	145, 346, 577
EcoT14I	CCWWGG	1 cut(s)	385
EcoT38I	GRGCYC	2 cut(s)	334, 522
ErhI	CCWWGG	1 cut(s)	385
FaeI	CATG	5 cut(s)	67, 166, 526, 658, 682
FatI	CATG	5 cut(s)	63, 162, 522, 654, 678
FauNDI	CATATG	1 cut(s)	709
Fnu4HI	GCNGC	2 cut(s)	6, 477
FriOI	GRGCYC	2 cut(s)	334, 522
Fsp4HI	GCNGC	2 cut(s)	6, 477
FspBI	CTAG	2 cut(s)	554, 633
GluI	GCNGC	2 cut(s)	6, 477
HaeIII	GGCC	2 cut(s)	384, 520
HapII	CCGG	3 cut(s)	122, 168, 573
Hin1II	CATG	5 cut(s)	67, 166, 526, 658, 682
HincII	GTYRAC	2 cut(s)	322, 496
HindII	GTYRAC	2 cut(s)	322, 496
HinfI	GANTC	1 cut(s)	49
HpaII	CCGG	3 cut(s)	122, 168, 573
HphI	GGTGA	3 cut(s)	101, 557, 639
Hpy166II	GTNNAC	5 cut(s)	43, 53, 322, 496, 602
Hpy188I	TCNGA	1 cut(s)	597
Hpy188III	TCNNGA	3 cut(s)	200, 434, 736
Hpy8I	GTNNAC	5 cut(s)	43, 53, 322, 496, 602
HpyCH4III	ACNGT	3 cut(s)	12, 72, 493
HpyCH4IV	ACGT	2 cut(s)	39, 498
HpyCH4V	TGCA	6 cut(s)	8, 106, 353, 395, 407, 682
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	2 cut(s)	365, 621
HpySE526I	ACGT	2 cut(s)	39, 498
Hsp92II	CATG	5 cut(s)	67, 166, 526, 658, 682
Kzo9I	GATC	2 cut(s)	174, 413
LguI	GCTCTTC	1 cut(s)	523
Lsp1109I	GCAGC	1 cut(s)	488
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	2 cut(s)	554, 633
MaeII	ACGT	2 cut(s)	39, 498
MaeIII	GTNAC	4 cut(s)	481, 545, 556, 640
MalI	GATC	2 cut(s)	176, 415
MboI	GATC	2 cut(s)	174, 413
MboII	GAAGA	4 cut(s)	137, 540, 580, 717
MflI	RGATCY	1 cut(s)	413
MhlI	GDGCHC	2 cut(s)	334, 522
MlsI	TGGCCA	1 cut(s)	384
MluCI	AATT	2 cut(s)	78, 402
MluNI	TGGCCA	1 cut(s)	384
MlyI	GAGTC	1 cut(s)	58
MnlI	CCTC	3 cut(s)	349, 439, 651
Mox20I	TGGCCA	1 cut(s)	384
MscI	TGGCCA	1 cut(s)	384
MseI	TTAA	4 cut(s)	294, 303, 569, 731
Msp20I	TGGCCA	1 cut(s)	384
MspA1I	CMGCKG	2 cut(s)	479, 563
MspI	CCGG	3 cut(s)	122, 168, 573
MspR9I	CCNGG	4 cut(s)	147, 169, 348, 579
MvaI	CCWGG	3 cut(s)	147, 348, 579
MwoI	GCNNNNNNNGC	1 cut(s)	31
NciI	CCSGG	1 cut(s)	169
NdeI	CATATG	1 cut(s)	709
NdeII	GATC	2 cut(s)	174, 413
NlaIII	CATG	5 cut(s)	67, 166, 526, 658, 682
NlaIV	GGNNCC	1 cut(s)	520
NmuCI	GTSAC	2 cut(s)	481, 545
PaqCI	CACCTGC	1 cut(s)	398
PciSI	GCTCTTC	1 cut(s)	523
PkrI	GCNGC	2 cut(s)	7, 478
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
Ppu21I	YACGTR	1 cut(s)	40
PsiI	TTATAA	1 cut(s)	401
Psp6I	CCWGG	3 cut(s)	145, 346, 577
PspGI	CCWGG	3 cut(s)	145, 346, 577
PspN4I	GGNNCC	1 cut(s)	520
PspOMI	GGGCCC	1 cut(s)	518
PspPI	GGNCC	3 cut(s)	518, 519, 575
PsuI	RGATCY	1 cut(s)	413
PvuII	CAGCTG	2 cut(s)	479, 563
RsaI	GTAC	3 cut(s)	44, 423, 450
RsaNI	GTAC	3 cut(s)	43, 422, 449
SapI	GCTCTTC	1 cut(s)	523
SaqAI	TTAA	4 cut(s)	294, 303, 569, 731
SatI	GCNGC	2 cut(s)	6, 477
Sau3AI	GATC	2 cut(s)	174, 413
Sau96I	GGNCC	3 cut(s)	518, 519, 575
SchI	GAGTC	1 cut(s)	58
ScrFI	CCNGG	4 cut(s)	147, 169, 348, 579
SduI	GDGCHC	2 cut(s)	334, 522
SetI	ASST	9 cut(s)	42, 97, 135, 412, 450, 481, 501, 565, 607
SfaNI	GCATC	1 cut(s)	49
SinI	GGWCC	1 cut(s)	575
Sse9I	AATT	2 cut(s)	78, 402
SsiI	CCGC	2 cut(s)	87, 264
SspI	AATATT	1 cut(s)	340
SspMI	CTAG	2 cut(s)	554, 633
StyD4I	CCNGG	4 cut(s)	145, 167, 346, 577
StyI	CCWWGG	1 cut(s)	385
TaaI	ACNGT	3 cut(s)	12, 72, 493
TaiI	ACGT	2 cut(s)	42, 501
TaqI	TCGA	2 cut(s)	173, 613
TasI	AATT	2 cut(s)	78, 402
TatI	WGTACW	1 cut(s)	421
Tru1I	TTAA	4 cut(s)	294, 303, 569, 731
Tru9I	TTAA	4 cut(s)	294, 303, 569, 731
TscAI	CASTG	2 cut(s)	230, 540
TseFI	GTSAC	2 cut(s)	481, 545
TseI	GCWGC	2 cut(s)	5, 476
Tsp45I	GTSAC	2 cut(s)	481, 545
TspDTI	ATGAA	4 cut(s)	151, 222, 580, 599
TspGWI	ACGGA	1 cut(s)	280
TspRI	CASTG	2 cut(s)	230, 540
VpaK11BI	GGWCC	1 cut(s)	575
XapI	RAATTY	1 cut(s)	78
XspI	CTAG	2 cut(s)	554, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.