MD06G1053000.v1.1

Mitochondrial biogenesis AIM24

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0010214
Physical Location & Seq
Reverse (-)
7666519 .. 7670987
4469 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1053000.v1.1.491

Sequence Viewer

Length: 846 bp
ATGGCTGCTCCGTTTTTCTCAACGCCTTTTCAGCCTTTCGTTTACCAGAGTCCACAAGATGCCGTGATACCTTTTCAAATTTTGGGCGGTGAAGCTCAACTGGTTCAGATAATGTTGAAGCCAGAAGAAAAGGTTATAGCCAAGCCTGGTTCAATGTGCTTCATGTCTGGGTCAATGGAAATGGAAAATGTCTTTGTTCCTGAAAATGAAGGAAGCATGTGGCAGTGGATTTTTGGGAAGACGGTCAGTAGCATAGTTTTCTGTAATGCTGGTCCAGGTGATGGATTTGTTGGAATTGCTGCACCTTCTCTTGCGAGAGTTCTCCCGATTGATTTAGCTATGTTTGGTGGAGAGATTTTGTGCCAGCCAGATGCATTCCTTTGTTCTGTGAATGATGTGAGAGTCAGTAATACACTCAACCAAAGGGCACGTAATGTTATTCCTGGTCCAGAGATATTTTTAAGACAGAAGCTATCTGGCCAAGGTCTTGCATTTATCCTTGGAGGTGGATCTGTTGTACAGAAAAATCTTGAAGTGGGAGAGGTATTATCTGTTGATGTGTCTTGTATAGCTGCTGTAACTGCAACAGTCAATATCCAAATCAAATTCAACGGTACTGTGAGAAGAGCACTGTTTGGTAGTGACAATCTGGTAACGGCTGTTCTAACTGGGCCAGGCATTGTCTTCATTCAGAGTTTACCTTTTCATCGATTTTCTCAGCGTATTGCTAGGGCAGTTACATCTCCAAACATGAGGGAAAATCCGAAGTTCTACGTGCAGATAGCCATTTTCTTTTTCCTGGCATATGTTGTGATTGTATCTTCGTTAATCTTGACCGATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIM24

Protein Analysis

282

Amino Acids

30.46

Weight (kDa)

5.9

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIM24 PF01987 25 - 233 1.5e-48 Mitochondrial biogenesis AIM24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 281
AciI CCGC 1 cut(s) 87
AclWI GGATC 1 cut(s) 517
AcoI YGGCCR 1 cut(s) 478
AcsI RAATTY 2 cut(s) 78, 605
AfaI GTAC 2 cut(s) 519, 616
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 5 cut(s) 77, 118, 153, 533, 610
AjnI CCWGG 5 cut(s) 145, 274, 442, 673, 798
AluBI AGCT 4 cut(s) 95, 338, 472, 572
AluI AGCT 4 cut(s) 95, 338, 472, 572
Alw21I GWGCWC 1 cut(s) 631
AlwI GGATC 1 cut(s) 517
AoxI GGCC 2 cut(s) 478, 671
ApeKI GCWGC 3 cut(s) 5, 299, 572
ApoI RAATTY 2 cut(s) 78, 605
AspS9I GGNCC 3 cut(s) 272, 446, 671
AsuHPI GGTGA 2 cut(s) 101, 290
AvaII GGWCC 2 cut(s) 272, 446
BaeGI GKGCMC 1 cut(s) 430
BalI TGGCCA 1 cut(s) 480
BbsI GAAGAC 2 cut(s) 245, 676
Bbv12I GWGCWC 1 cut(s) 631
BbvI GCAGC 2 cut(s) 286, 559
BccI CCATC 1 cut(s) 275
BceAI ACGGC 2 cut(s) 47, 672
BciT130I CCWGG 5 cut(s) 147, 276, 444, 675, 800
BfaI CTAG 1 cut(s) 729
BisI GCNGC 3 cut(s) 6, 300, 573
BlsI GCNGC 3 cut(s) 7, 301, 574
Bme1390I CCNGG 5 cut(s) 147, 276, 444, 675, 800
Bme18I GGWCC 2 cut(s) 272, 446
BmgT120I GGNCC 3 cut(s) 272, 446, 671
BmrFI CCNGG 5 cut(s) 147, 276, 444, 675, 800
BmrI ACTGGG 1 cut(s) 678
BmsI GCATC 2 cut(s) 49, 361
BmuI ACTGGG 1 cut(s) 678
BpiI GAAGAC 2 cut(s) 245, 676
Bsa29I ATCGAT 1 cut(s) 709
BsaAI YACGTR 2 cut(s) 431, 775
BsaJI CCNNGG 2 cut(s) 481, 499
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse1I ACTGG 2 cut(s) 105, 673
BseBI CCWGG 5 cut(s) 147, 276, 444, 675, 800
BseCI ATCGAT 1 cut(s) 709
BseDI CCNNGG 2 cut(s) 481, 499
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMII CTCAG 1 cut(s) 731
BseNI ACTGG 2 cut(s) 105, 673
BseSI GKGCMC 1 cut(s) 430
BseXI GCAGC 2 cut(s) 286, 559
BsgI GTGCAG 2 cut(s) 285, 797
BshFI GGCC 2 cut(s) 480, 673
BshVI ATCGAT 1 cut(s) 709
BsiHKAI GWGCWC 1 cut(s) 631
BslI CCNNNNNNNGG 1 cut(s) 281
BsmI GAATGC 1 cut(s) 374
BsnI GGCC 2 cut(s) 480, 673
Bsp1286I GDGCHC 2 cut(s) 430, 631
Bsp1407I TGTACA 1 cut(s) 517
Bsp143I GATC 1 cut(s) 509
BspACI CCGC 1 cut(s) 87
BspANI GGCC 2 cut(s) 480, 673
BspCNI CTCAG 1 cut(s) 730
BspDI ATCGAT 1 cut(s) 709
BspPI GGATC 1 cut(s) 517
BspQI GCTCTTC 1 cut(s) 619
BsrGI TGTACA 1 cut(s) 517
BsrI ACTGG 2 cut(s) 105, 673
BssECI CCNNGG 2 cut(s) 481, 499
BssMI GATC 1 cut(s) 509
BssT1I CCWWGG 2 cut(s) 481, 499
Bst2UI CCWGG 5 cut(s) 147, 276, 444, 675, 800
Bst4CI ACNGT 5 cut(s) 244, 589, 614, 619, 633
Bst6I CTCTTC 1 cut(s) 619
BstAUI TGTACA 1 cut(s) 517
BstBAI YACGTR 2 cut(s) 431, 775
BstC8I GCNNGC 1 cut(s) 365
BstDEI CTNAG 1 cut(s) 717
BstKTI GATC 1 cut(s) 512
BstMBI GATC 1 cut(s) 509
BstMWI GCNNNNNNNGC 2 cut(s) 31, 581
BstNI CCWGG 5 cut(s) 147, 276, 444, 675, 800
BstNSI RCATGY 1 cut(s) 220
BstSCI CCNGG 5 cut(s) 145, 274, 442, 673, 798
BstSLI GKGCMC 1 cut(s) 430
BstV1I GCAGC 2 cut(s) 286, 559
BstV2I GAAGAC 2 cut(s) 245, 676
BstX2I RGATCY 1 cut(s) 509
BstYI RGATCY 1 cut(s) 509
Bsu15I ATCGAT 1 cut(s) 709
BsuRI GGCC 2 cut(s) 480, 673
BsuTUI ATCGAT 1 cut(s) 709
BtsI GCAGTG 1 cut(s) 230
BtsIMutI CAGTG 2 cut(s) 230, 629
Cac8I GCNNGC 1 cut(s) 365
Cfr13I GGNCC 3 cut(s) 272, 446, 671
ClaI ATCGAT 1 cut(s) 709
Csp6I GTAC 2 cut(s) 518, 615
CviAII CATG 3 cut(s) 163, 217, 751
CviQI GTAC 2 cut(s) 518, 615
DdeI CTNAG 1 cut(s) 717
DpnI GATC 1 cut(s) 511
DpnII GATC 1 cut(s) 509
EaeI YGGCCR 1 cut(s) 478
Eam1104I CTCTTC 1 cut(s) 619
EarI CTCTTC 1 cut(s) 619
Eco130I CCWWGG 2 cut(s) 481, 499
Eco47I GGWCC 2 cut(s) 272, 446
EcoRII CCWGG 5 cut(s) 145, 274, 442, 673, 798
EcoT14I CCWWGG 2 cut(s) 481, 499
EcoT22I ATGCAT 1 cut(s) 376
ErhI CCWWGG 2 cut(s) 481, 499
FaeI CATG 3 cut(s) 166, 220, 754
FatI CATG 3 cut(s) 162, 216, 750
FauNDI CATATG 1 cut(s) 805
Fnu4HI GCNGC 3 cut(s) 6, 300, 573
Fsp4HI GCNGC 3 cut(s) 6, 300, 573
FspBI CTAG 1 cut(s) 729
GluI GCNGC 3 cut(s) 6, 300, 573
HaeIII GGCC 2 cut(s) 480, 673
Hin1II CATG 3 cut(s) 166, 220, 754
HinfI GANTC 2 cut(s) 49, 402
HphI GGTGA 2 cut(s) 101, 290
Hpy166II GTNNAC 3 cut(s) 43, 53, 698
Hpy188I TCNGA 3 cut(s) 108, 693, 765
Hpy188III TCNNGA 5 cut(s) 200, 325, 449, 530, 832
Hpy8I GTNNAC 3 cut(s) 43, 53, 698
HpyAV CCTTC 2 cut(s) 203, 315
HpyCH4III ACNGT 5 cut(s) 244, 589, 614, 619, 633
HpyCH4IV ACGT 2 cut(s) 430, 774
HpyCH4V TGCA 5 cut(s) 302, 374, 491, 584, 778
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 581
HpyF3I CTNAG 1 cut(s) 717
HpySE526I ACGT 2 cut(s) 430, 774
Hsp92II CATG 3 cut(s) 166, 220, 754
Kzo9I GATC 1 cut(s) 509
LguI GCTCTTC 1 cut(s) 619
LmnI GCTCC 1 cut(s) 13
Lsp1109I GCAGC 2 cut(s) 286, 559
LweI GCATC 2 cut(s) 49, 361
MaeI CTAG 1 cut(s) 729
MaeII ACGT 2 cut(s) 430, 774
MaeIII GTNAC 4 cut(s) 577, 641, 652, 736
MalI GATC 1 cut(s) 511
MboI GATC 1 cut(s) 509
MboII GAAGA 5 cut(s) 137, 250, 636, 676, 813
MflI RGATCY 1 cut(s) 509
MhlI GDGCHC 2 cut(s) 430, 631
MlsI TGGCCA 1 cut(s) 480
MluCI AATT 3 cut(s) 78, 294, 605
MluNI TGGCCA 1 cut(s) 480
MlyI GAGTC 2 cut(s) 58, 411
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 3 cut(s) 497, 535, 747
Mox20I TGGCCA 1 cut(s) 480
Mph1103I ATGCAT 1 cut(s) 376
MscI TGGCCA 1 cut(s) 480
MseI TTAA 2 cut(s) 461, 827
Msp20I TGGCCA 1 cut(s) 480
MspR9I CCNGG 5 cut(s) 147, 276, 444, 675, 800
Mva1269I GAATGC 1 cut(s) 374
MvaI CCWGG 5 cut(s) 147, 276, 444, 675, 800
MwoI GCNNNNNNNGC 2 cut(s) 31, 581
NdeI CATATG 1 cut(s) 805
NdeII GATC 1 cut(s) 509
NlaIII CATG 3 cut(s) 166, 220, 754
NmuCI GTSAC 1 cut(s) 641
NsiI ATGCAT 1 cut(s) 376
NspI RCATGY 1 cut(s) 220
PciSI GCTCTTC 1 cut(s) 619
PctI GAATGC 1 cut(s) 374
PflMI CCANNNNNTGG 1 cut(s) 281
PkrI GCNGC 3 cut(s) 7, 301, 574
PleI GAGTC 2 cut(s) 57, 410
PpsI GAGTC 2 cut(s) 57, 410
Ppu21I YACGTR 2 cut(s) 431, 775
Psp6I CCWGG 5 cut(s) 145, 274, 442, 673, 798
PspGI CCWGG 5 cut(s) 145, 274, 442, 673, 798
PspPI GGNCC 3 cut(s) 272, 446, 671
PsrI GAACNNNNNNTAC 2 cut(s) 645, 677
PsuI RGATCY 1 cut(s) 509
RsaI GTAC 2 cut(s) 519, 616
RsaNI GTAC 2 cut(s) 518, 615
SapI GCTCTTC 1 cut(s) 619
SaqAI TTAA 2 cut(s) 461, 827
SatI GCNGC 3 cut(s) 6, 300, 573
Sau3AI GATC 1 cut(s) 509
Sau96I GGNCC 3 cut(s) 272, 446, 671
SchI GAGTC 2 cut(s) 58, 411
ScrFI CCNGG 5 cut(s) 147, 276, 444, 675, 800
SduI GDGCHC 2 cut(s) 430, 631
SfaNI GCATC 2 cut(s) 49, 361
SinI GGWCC 2 cut(s) 272, 446
Sse9I AATT 3 cut(s) 78, 294, 605
SsiI CCGC 1 cut(s) 87
SspMI CTAG 1 cut(s) 729
StyD4I CCNGG 5 cut(s) 145, 274, 442, 673, 798
StyI CCWWGG 2 cut(s) 481, 499
TaaI ACNGT 5 cut(s) 244, 589, 614, 619, 633
TaiI ACGT 2 cut(s) 433, 777
TaqI TCGA 1 cut(s) 709
TasI AATT 3 cut(s) 78, 294, 605
TatI WGTACW 1 cut(s) 517
Tru1I TTAA 2 cut(s) 461, 827
Tru9I TTAA 2 cut(s) 461, 827
TscAI CASTG 2 cut(s) 230, 636
TseFI GTSAC 1 cut(s) 641
TseI GCWGC 3 cut(s) 5, 299, 572
Tsp45I GTSAC 1 cut(s) 641
TspDTI ATGAA 4 cut(s) 151, 222, 676, 695
TspRI CASTG 2 cut(s) 230, 636
Van91I CCANNNNNTGG 1 cut(s) 281
VpaK11BI GGWCC 2 cut(s) 272, 446
XapI RAATTY 2 cut(s) 78, 605
XceI RCATGY 1 cut(s) 220
XspI CTAG 1 cut(s) 729
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.