AT5G47420

Mitochondrial biogenesis AIM24

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010214
Physical Location & Seq
Forward (+)
19232784 .. 19235066
2283 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47420.1

Sequence Viewer

Length: 849 bp
ATGGCCGCTCCGTTTTTTTCAACTCCATTTCAGCCTTATGTCTACCAGAGTCAACAAGATACTATTACACCGTTCCAGATTTTGGGTGGTGAATCCCAAGTTGTTCAGATAATGTTAAAGTCAGAGGAGAAAGTCATTGCTAAGCCTGCTTCCATGTGCTACATGTCTGGCTCCATCGAGATGGAAAATACATACACTCCTGAACAAGAAGTTGGAGTTCTGCAGTGGATTTTGGGCAAGAGTGTAAGCAGTGTTGTTCTTCGGAATACTGGGCAAAACGACGGGTTTGTTGGTATTGCTGCACCTTATTTGGCTAGGATTCTCCCGATTGATTTGGCAATGTTTGGAGGTGAGATCTTATGCCAGCCAGATGCATTCCTTTGTTCTGTCCATGATGTGAAGGTTGTCAACTCCGTTGACCAGAGAGCAAGAAACATTGTTGCCGCTGGTGCAGAGGGATTTCTGAGACAACGCCTATCTGGACAAGGTCTTGCTTTCATCCTCGCAGGTGGCTCTGTTGTACAAAAAGTTCTGGAGGTAGGAGAAGTTTTCTCCATTGACGTTTCCTGTATTGCTGCTCTCACACCCTCTATCGATGTCCGAATCAAAAACAATGCTCCTTTTAGACGAGCACTATTCGGGGGTGATAACGTAGTAATGGCGACTCTAACGGGGCCTGGCATTGTCTTCATTCAAAGCTTACCGTTTCATCGGCTCTCGCAGCGTATTGCAAGGTCGGTAACGTCGCCAAACATGAGAGAGAATCCAAAATTGCTGATACAGATAGCTATATTTGCGTTCCTAGCATACGCTGTGATTTTGTCATCGTTGATCTTAACCGAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIM24

Protein Analysis

282

Amino Acids

30.57

Weight (kDa)

6.15

Isoelectric Point (pI)

48.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIM24 PF01987 25 - 234 2.7e-48 Mitochondrial biogenesis AIM24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 497
Acc36I ACCTGC 1 cut(s) 497
AccB7I CCANNNNNTGG 1 cut(s) 82
AccBSI CCGCTC 1 cut(s) 8
AccI GTMKAC 1 cut(s) 42
AciI CCGC 2 cut(s) 6, 444
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 522
AfiI CCNNNNNNNGG 1 cut(s) 82
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 2 cut(s) 21, 695
AjnI CCWGG 1 cut(s) 676
AjuI GAANNNNNNNTTGG 2 cut(s) 195, 227
AluBI AGCT 2 cut(s) 699, 788
AluI AGCT 2 cut(s) 699, 788
Alw21I GWGCWC 1 cut(s) 634
Alw26I GTCTC 1 cut(s) 460
AoxI GGCC 2 cut(s) 3, 674
ApeKI GCWGC 3 cut(s) 299, 575, 721
AspS9I GGNCC 1 cut(s) 674
AsuHPI GGTGA 3 cut(s) 101, 362, 656
BbsI GAAGAC 1 cut(s) 679
Bbv12I GWGCWC 1 cut(s) 634
BbvI GCAGC 3 cut(s) 286, 562, 733
BccI CCATC 2 cut(s) 175, 182
BciT130I CCWGG 1 cut(s) 678
BcoDI GTCTC 1 cut(s) 460
BfaI CTAG 2 cut(s) 315, 803
BfmI CTRYAG 1 cut(s) 221
BfuAI ACCTGC 1 cut(s) 497
BglII AGATCT 1 cut(s) 354
BisI GCNGC 5 cut(s) 6, 300, 444, 576, 722
BlpI GCTNAGC 1 cut(s) 141
BlsI GCNGC 5 cut(s) 7, 301, 445, 577, 723
Bme1390I CCNGG 1 cut(s) 678
BmgT120I GGNCC 1 cut(s) 674
BmiI GGNNCC 2 cut(s) 172, 675
BmrFI CCNGG 1 cut(s) 678
BmrI ACTGGG 1 cut(s) 279
BmsI GCATC 1 cut(s) 361
BmuI ACTGGG 1 cut(s) 279
BpiI GAAGAC 1 cut(s) 679
BpmI CTGGAG 1 cut(s) 554
Bpu1102I GCTNAGC 1 cut(s) 141
Bsa29I ATCGAT 1 cut(s) 594
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 274
Bse3DI GCAATG 2 cut(s) 135, 345
BseBI CCWGG 1 cut(s) 678
BseCI ATCGAT 1 cut(s) 594
BseGI GGATG 1 cut(s) 498
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMI GCAATG 2 cut(s) 135, 345
BseMII CTCAG 1 cut(s) 455
BseNI ACTGG 1 cut(s) 274
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 3 cut(s) 286, 562, 733
BsgI GTGCAG 2 cut(s) 285, 471
BshFI GGCC 2 cut(s) 5, 676
BshVI ATCGAT 1 cut(s) 594
BsiHKAI GWGCWC 1 cut(s) 634
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 460
BsmI GAATGC 1 cut(s) 374
BsnI GGCC 2 cut(s) 5, 676
Bsp1286I GDGCHC 1 cut(s) 634
Bsp1407I TGTACA 1 cut(s) 520
Bsp143I GATC 2 cut(s) 354, 831
Bsp1720I GCTNAGC 1 cut(s) 141
BspACI CCGC 2 cut(s) 6, 444
BspANI GGCC 2 cut(s) 5, 676
BspCNI CTCAG 1 cut(s) 456
BspDI ATCGAT 1 cut(s) 594
BspLI GGNNCC 2 cut(s) 172, 675
BspMAI CTGCAG 1 cut(s) 225
BspMI ACCTGC 1 cut(s) 497
BsrBI CCGCTC 1 cut(s) 8
BsrDI GCAATG 2 cut(s) 135, 345
BsrGI TGTACA 1 cut(s) 520
BsrI ACTGG 1 cut(s) 274
BssMI GATC 2 cut(s) 354, 831
Bst2UI CCWGG 1 cut(s) 678
Bst4CI ACNGT 2 cut(s) 72, 705
BstAUI TGTACA 1 cut(s) 520
BstC8I GCNNGC 2 cut(s) 147, 365
BstDEI CTNAG 2 cut(s) 141, 464
BstF5I GGATG 1 cut(s) 498
BstKTI GATC 2 cut(s) 357, 834
BstMAI GTCTC 1 cut(s) 460
BstMBI GATC 2 cut(s) 354, 831
BstMWI GCNNNNNNNGC 5 cut(s) 146, 449, 721, 794, 803
BstNI CCWGG 1 cut(s) 678
BstNSI RCATGY 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 676
BstSFI CTRYAG 1 cut(s) 221
BstV1I GCAGC 3 cut(s) 286, 562, 733
BstV2I GAAGAC 1 cut(s) 679
BstX2I RGATCY 1 cut(s) 354
BstXI CCANNNNNNTGG 1 cut(s) 181
BstYI RGATCY 1 cut(s) 354
Bsu15I ATCGAT 1 cut(s) 594
BsuRI GGCC 2 cut(s) 5, 676
BsuTUI ATCGAT 1 cut(s) 594
BtsCI GGATG 1 cut(s) 498
BtsI GCAGTG 2 cut(s) 230, 256
BtsIMutI CAGTG 2 cut(s) 230, 256
BveI ACCTGC 1 cut(s) 497
Cac8I GCNNGC 2 cut(s) 147, 365
Cfr13I GGNCC 1 cut(s) 674
ClaI ATCGAT 1 cut(s) 594
Csp6I GTAC 1 cut(s) 521
CviAII CATG 4 cut(s) 154, 163, 392, 754
CviQI GTAC 1 cut(s) 521
DdeI CTNAG 2 cut(s) 141, 464
DpnI GATC 2 cut(s) 356, 833
DpnII GATC 2 cut(s) 354, 831
EaeI YGGCCR 1 cut(s) 3
EcoO109I RGGNCCY 1 cut(s) 674
EcoRII CCWGG 1 cut(s) 676
EcoT22I ATGCAT 1 cut(s) 376
FaeI CATG 4 cut(s) 157, 166, 395, 757
FaiI YATR 9 cut(s) 39, 155, 164, 193, 361, 393, 755, 791, 808
FatI CATG 4 cut(s) 153, 162, 391, 753
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 5 cut(s) 6, 300, 444, 576, 722
FokI GGATG 1 cut(s) 485
Fsp4HI GCNGC 5 cut(s) 6, 300, 444, 576, 722
FspBI CTAG 2 cut(s) 315, 803
GluI GCNGC 5 cut(s) 6, 300, 444, 576, 722
GsuI CTGGAG 1 cut(s) 554
HaeIII GGCC 2 cut(s) 5, 676
Hin1II CATG 4 cut(s) 157, 166, 395, 757
HincII GTYRAC 3 cut(s) 53, 409, 418
HindII GTYRAC 3 cut(s) 53, 409, 418
HindIII AAGCTT 1 cut(s) 697
HinfI GANTC 6 cut(s) 49, 92, 319, 603, 664, 763
HphI GGTGA 3 cut(s) 101, 362, 656
Hpy166II GTNNAC 4 cut(s) 43, 53, 409, 418
Hpy188I TCNGA 5 cut(s) 108, 124, 264, 465, 602
Hpy188III TCNNGA 6 cut(s) 76, 178, 200, 325, 480, 533
Hpy8I GTNNAC 4 cut(s) 43, 53, 409, 418
Hpy99I CGWCG 2 cut(s) 284, 748
HpyAV CCTTC 1 cut(s) 394
HpyCH4III ACNGT 2 cut(s) 72, 705
HpyCH4IV ACGT 3 cut(s) 561, 651, 743
HpyCH4V TGCA 5 cut(s) 223, 302, 374, 452, 731
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 449, 721, 794, 803
HpyF3I CTNAG 2 cut(s) 141, 464
HpySE526I ACGT 3 cut(s) 561, 651, 743
Hsp92II CATG 4 cut(s) 157, 166, 395, 757
Kzo9I GATC 2 cut(s) 354, 831
LmnI GCTCC 3 cut(s) 13, 176, 622
Lsp1109I GCAGC 3 cut(s) 286, 562, 733
LweI GCATC 1 cut(s) 361
MaeI CTAG 2 cut(s) 315, 803
MaeII ACGT 3 cut(s) 561, 651, 743
MaeIII GTNAC 1 cut(s) 739
MalI GATC 2 cut(s) 356, 833
MbiI CCGCTC 1 cut(s) 8
MboI GATC 2 cut(s) 354, 831
MboII GAAGA 2 cut(s) 251, 679
MflI RGATCY 1 cut(s) 354
MhlI GDGCHC 1 cut(s) 634
MluCI AATT 1 cut(s) 770
MlyI GAGTC 2 cut(s) 58, 658
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 6 cut(s) 118, 341, 448, 512, 529, 598
Mph1103I ATGCAT 1 cut(s) 376
MseI TTAA 2 cut(s) 116, 836
MslI CAYNNNNRTG 1 cut(s) 179
MspA1I CMGCKG 1 cut(s) 446
MspR9I CCNGG 1 cut(s) 678
Mva1269I GAATGC 1 cut(s) 374
MvaI CCWGG 1 cut(s) 678
MwoI GCNNNNNNNGC 5 cut(s) 146, 449, 721, 794, 803
NdeII GATC 2 cut(s) 354, 831
NlaIII CATG 4 cut(s) 157, 166, 395, 757
NlaIV GGNNCC 2 cut(s) 172, 675
NsiI ATGCAT 1 cut(s) 376
NspI RCATGY 1 cut(s) 166
PaqCI CACCTGC 1 cut(s) 497
PciI ACATGT 1 cut(s) 162
PctI GAATGC 1 cut(s) 374
PfeI GAWTC 4 cut(s) 92, 319, 603, 763
PflFI GACNNNGTC 1 cut(s) 486
PflMI CCANNNNNTGG 1 cut(s) 82
PkrI GCNGC 5 cut(s) 7, 301, 445, 577, 723
PleI GAGTC 2 cut(s) 57, 658
PpsI GAGTC 2 cut(s) 57, 658
PscI ACATGT 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 676
PspGI CCWGG 1 cut(s) 676
PspN4I GGNNCC 2 cut(s) 172, 675
PspPI GGNCC 1 cut(s) 674
PsrI GAACNNNNNNTAC 2 cut(s) 513, 545
PstI CTGCAG 1 cut(s) 225
PsuI RGATCY 1 cut(s) 354
PsyI GACNNNGTC 1 cut(s) 486
RsaI GTAC 1 cut(s) 522
RsaNI GTAC 1 cut(s) 521
RseI CAYNNNNRTG 1 cut(s) 179
SaqAI TTAA 2 cut(s) 116, 836
SatI GCNGC 5 cut(s) 6, 300, 444, 576, 722
Sau3AI GATC 2 cut(s) 354, 831
Sau96I GGNCC 1 cut(s) 674
SchI GAGTC 2 cut(s) 58, 658
ScrFI CCNGG 1 cut(s) 678
SduI GDGCHC 1 cut(s) 634
SfaNI GCATC 1 cut(s) 361
SfcI CTRYAG 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 179
Sse9I AATT 1 cut(s) 770
SsiI CCGC 2 cut(s) 6, 444
SspMI CTAG 2 cut(s) 315, 803
StyD4I CCNGG 1 cut(s) 676
TaaI ACNGT 2 cut(s) 72, 705
TaiI ACGT 3 cut(s) 564, 654, 746
TaqI TCGA 2 cut(s) 177, 594
TasI AATT 1 cut(s) 770
TatI WGTACW 1 cut(s) 520
TauI GCSGC 2 cut(s) 8, 446
TfiI GAWTC 4 cut(s) 92, 319, 603, 763
Tru1I TTAA 2 cut(s) 116, 836
Tru9I TTAA 2 cut(s) 116, 836
TscAI CASTG 2 cut(s) 230, 256
TseI GCWGC 3 cut(s) 299, 575, 721
TspDTI ATGAA 3 cut(s) 487, 679, 698
TspGWI ACGGA 1 cut(s) 403
TspRI CASTG 2 cut(s) 230, 256
Tth111I GACNNNGTC 1 cut(s) 486
Van91I CCANNNNNTGG 1 cut(s) 82
XceI RCATGY 1 cut(s) 166
XcmI CCANNNNNNNNNTGG 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 42
XspI CTAG 2 cut(s) 315, 803
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.