Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011889

Physical Location & Seq

Genomic Coordinates Reverse (-)

9752824 .. 9754161

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCTACACCAAACGAAGTATCAGCTCTTTTCCTCATCAAGAAGTATCTCCTCGACGAATTGTCTCCGTTGCCTACTACTGCCACCACCAATCGATGGATGAACGATTTCACGTCATTTGATCAAACCGGTTTCGAGTTTTCTGAATTTGAAACCAAACCGGAAATAATCGATCTCGTCACTCCCAAACCGGAGATTTTTGATTTCGATGTGAAATCTGAAATTCCATCTGAATCGAACGATTCCTTCACGTTCCAATCGAATCCTCCTCGCGTTACTGTTCAATCCAATCGAAAACCGCCGTTGAAGATCGCACCACCGAACCGAACCAAGTGGATTCAATTCGCAACCGGAAATCCTAAACCGGAACTTCCCGTACCGGTTGTAGCAGCAGAGGAGAAGAGGCATTACAGAGGAGTGAGGATGAGGCCGTGGGGGAAATTCGCGGCGGAGATTCGAGACCCGACTCGTCGTGGAACTCGTGTTTGGCTCGGGACGTTTGAGACGGCGATCGAAGCGGCTAGAGCTTACGACAAAGAAGCGTTTAGACTACGAGGATCAAAGGCGATTCTGAATTTCCCGCTTGAAGTTGACAAGTGGAATCCACGCGCTGAAGATGGTCGTGGCCTGTACAACAAACGGAAGAGAGACGGCGAGGAGGAGGAAGTGACGGTGGTTGAGAAAGTGCTAAAGACGGAGGAGAGTTACGACGTTAGCGGCGGCGAGAATGTTGAGTCAGGTTTGACGGCGATAGATGACTGGGATTTGACGGAGTTTCTGAGCATGCCGCTTTTATCGCCGTTATCTCCACACCCACCGTTTGGTTATCCACAATTGACCGTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000302 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

282

Amino Acids

32.11

Weight (kDa)

5.2

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	136 - 186	1.3e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17490 AT5G47230
fragaria_vesca	FvH4_5g19800
malus_domestica	MD04G1058200.v1.1 MD06G1051900.v1.1
prunus_persica	Prupe.5G062000_v2.0.a1
pyrus_communis	pycom04g05190 pycom06g04360
rosa_chinensis	RchiOBHm_Chr7g0204611
rosa_laevigata	RLG00000003444
rosa_multiflora	Rmu_sc0003221.1_g000082 Rmu_sc0005129.1_g000017
rosa_roxburghii	Rroxscaffold_3G00252960
rosa_rugosa	Rorug07G0085200
rosa_samantha	Rh7AG214900 Rh7BG212200 Rh7CG227900 Rh7DG222500
rosa_wichuraiana	Rw7G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	96, 821
AccII	CGCG	3 cut(s)	273, 446, 609
AciI	CCGC	8 cut(s)	299, 446, 449, 518, 581, 717, 720, 788
AclWI	GGATC	1 cut(s)	565
AcsI	RAATTY	4 cut(s)	146, 222, 440, 574
AcuI	CTGAAG	1 cut(s)	633
AfaI	GTAC	2 cut(s)	378, 632
AfiI	CCNNNNNNNGG	2 cut(s)	96, 821
AgeI	ACCGGT	2 cut(s)	128, 379
AgsI	TTSAA	5 cut(s)	152, 284, 307, 341, 587
AhdI	GACNNNNNGTC	1 cut(s)	61
AjiI	CACGTC	1 cut(s)	114
AjuI	GAANNNNNNNTTGG	2 cut(s)	469, 501
AluBI	AGCT	2 cut(s)	26, 527
AluI	AGCT	2 cut(s)	26, 527
Alw26I	GTCTC	4 cut(s)	69, 453, 497, 642
AlwI	GGATC	1 cut(s)	565
Ama87I	CYCGRG	1 cut(s)	491
AoxI	GGCC	2 cut(s)	428, 625
ApeKI	GCWGC	1 cut(s)	389
ApoI	RAATTY	4 cut(s)	146, 222, 440, 574
AsiGI	ACCGGT	2 cut(s)	128, 379
Asp700I	GAANNNNTTC	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	611
AvaI	CYCGRG	1 cut(s)	491
BarI	GAAGNNNNNNTAC	2 cut(s)	392, 424
BauI	CACGAG	1 cut(s)	480
BbvI	GCAGC	1 cut(s)	401
BccI	CCATC	3 cut(s)	90, 235, 611
BceAI	ACGGC	6 cut(s)	286, 415, 522, 667, 762, 784
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	4 cut(s)	69, 453, 497, 642
BfaI	CTAG	1 cut(s)	522
BisI	GCNGC	6 cut(s)	390, 447, 519, 718, 721, 788
BlsI	GCNGC	6 cut(s)	391, 448, 520, 719, 722, 789
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	491
BmgBI	CACGTC	1 cut(s)	114
BmrI	ACTGGG	1 cut(s)	769
BmuI	ACTGGG	1 cut(s)	769
Bsa29I	ATCGAT	2 cut(s)	94, 171
BsaI	GGTCTC	1 cut(s)	453
BsaJI	CCNNGG	1 cut(s)	431
BsaWI	WCCGGW	6 cut(s)	128, 160, 190, 350, 364, 379
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 821
Bse118I	RCCGGY	2 cut(s)	128, 379
Bse1I	ACTGG	1 cut(s)	764
BseCI	ATCGAT	2 cut(s)	94, 171
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	2 cut(s)	105, 429
BseLI	CCNNNNNNNGG	2 cut(s)	96, 821
BseMII	CTCAG	1 cut(s)	770
BseNI	ACTGG	1 cut(s)	764
BseRI	GAGGAG	7 cut(s)	41, 258, 410, 429, 671, 674, 713
BseXI	GCAGC	1 cut(s)	401
Bsh1236I	CGCG	3 cut(s)	273, 446, 609
Bsh1285I	CGRYCG	1 cut(s)	513
BshFI	GGCC	2 cut(s)	430, 627
BshTI	ACCGGT	2 cut(s)	128, 379
BshVI	ATCGAT	2 cut(s)	94, 171
BsiEI	CGRYCG	1 cut(s)	513
BsiHKCI	CYCGRG	1 cut(s)	491
BsiSI	CCGG	6 cut(s)	129, 161, 191, 351, 365, 380
BslFI	GGGAC	1 cut(s)	508
BslI	CCNNNNNNNGG	2 cut(s)	96, 821
BsmAI	GTCTC	4 cut(s)	69, 453, 497, 642
BsmBI	CGTCTC	2 cut(s)	497, 642
BsmFI	GGGAC	1 cut(s)	508
BsnI	GGCC	2 cut(s)	430, 627
Bso31I	GGTCTC	1 cut(s)	453
BsoBI	CYCGRG	1 cut(s)	491
Bsp1407I	TGTACA	1 cut(s)	630
Bsp143I	GATC	5 cut(s)	121, 172, 309, 510, 557
BspACI	CCGC	8 cut(s)	299, 446, 449, 518, 581, 717, 720, 788
BspANI	GGCC	2 cut(s)	430, 627
BspCNI	CTCAG	1 cut(s)	771
BspDI	ATCGAT	2 cut(s)	94, 171
BspFNI	CGCG	3 cut(s)	273, 446, 609
BspPI	GGATC	1 cut(s)	565
BspTNI	GGTCTC	1 cut(s)	453
BsrFI	RCCGGY	2 cut(s)	128, 379
BsrGI	TGTACA	1 cut(s)	630
BsrI	ACTGG	1 cut(s)	764
BssAI	RCCGGY	2 cut(s)	128, 379
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	5 cut(s)	121, 172, 309, 510, 557
BssSI	CACGAG	1 cut(s)	480
Bst2BI	CACGAG	1 cut(s)	480
Bst4CI	ACNGT	4 cut(s)	280, 673, 819, 841
Bst6I	CTCTTC	2 cut(s)	395, 638
BstAUI	TGTACA	1 cut(s)	630
BstC8I	GCNNGC	1 cut(s)	785
BstDEI	CTNAG	1 cut(s)	779
BstDSI	CCRYGG	1 cut(s)	431
BstF5I	GGATG	2 cut(s)	105, 429
BstFNI	CGCG	3 cut(s)	273, 446, 609
BstHHI	GCGC	1 cut(s)	611
BstKTI	GATC	5 cut(s)	124, 175, 312, 513, 560
BstMAI	GTCTC	4 cut(s)	69, 453, 497, 642
BstMBI	GATC	5 cut(s)	121, 172, 309, 510, 557
BstMCI	CGRYCG	1 cut(s)	513
BstMWI	GCNNNNNNNGC	3 cut(s)	515, 524, 796
BstNSI	RCATGY	1 cut(s)	787
BstUI	CGCG	3 cut(s)	273, 446, 609
BstV1I	GCAGC	1 cut(s)	401
Bsu15I	ATCGAT	2 cut(s)	94, 171
BsuRI	GGCC	2 cut(s)	430, 627
BsuTUI	ATCGAT	2 cut(s)	94, 171
BtgI	CCRYGG	1 cut(s)	431
BtrI	CACGTC	1 cut(s)	114
BtsCI	GGATG	2 cut(s)	105, 429
Cac8I	GCNNGC	1 cut(s)	785
CfoI	GCGC	1 cut(s)	611
Cfr10I	RCCGGY	2 cut(s)	128, 379
ClaI	ATCGAT	2 cut(s)	94, 171
Csp6I	GTAC	2 cut(s)	377, 631
CspAI	ACCGGT	2 cut(s)	128, 379
CviAII	CATG	1 cut(s)	784
CviJI	RGCY	7 cut(s)	5, 26, 430, 490, 521, 527, 627
CviKI_1	RGCY	7 cut(s)	5, 26, 430, 490, 521, 527, 627
CviQI	GTAC	2 cut(s)	377, 631
DdeI	CTNAG	1 cut(s)	779
DpnI	GATC	5 cut(s)	123, 174, 311, 512, 559
DpnII	GATC	5 cut(s)	121, 172, 309, 510, 557
DriI	GACNNNNNGTC	1 cut(s)	61
Eam1104I	CTCTTC	2 cut(s)	395, 638
Eam1105I	GACNNNNNGTC	1 cut(s)	61
EarI	CTCTTC	2 cut(s)	395, 638
EciI	GGCGGA	1 cut(s)	464
Eco31I	GGTCTC	1 cut(s)	453
Eco57I	CTGAAG	1 cut(s)	633
Eco88I	CYCGRG	1 cut(s)	491
Esp3I	CGTCTC	2 cut(s)	497, 642
FaeI	CATG	1 cut(s)	787
FaiI	YATR	1 cut(s)	785
FaqI	GGGAC	1 cut(s)	508
FatI	CATG	1 cut(s)	783
FauI	CCCGC	1 cut(s)	588
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	6 cut(s)	390, 447, 519, 718, 721, 788
FokI	GGATG	2 cut(s)	112, 436
Fsp4HI	GCNGC	6 cut(s)	390, 447, 519, 718, 721, 788
FspBI	CTAG	1 cut(s)	522
GlaI	GCGC	1 cut(s)	610
GluI	GCNGC	6 cut(s)	390, 447, 519, 718, 721, 788
HaeIII	GGCC	2 cut(s)	430, 627
HapII	CCGG	6 cut(s)	129, 161, 191, 351, 365, 380
HhaI	GCGC	1 cut(s)	611
Hin1II	CATG	1 cut(s)	787
Hin6I	GCGC	1 cut(s)	609
HinP1I	GCGC	1 cut(s)	609
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HinfI	GANTC	9 cut(s)	233, 242, 262, 337, 454, 466, 568, 601, 734
HpaII	CCGG	6 cut(s)	129, 161, 191, 351, 365, 380
Hpy166II	GTNNAC	1 cut(s)	592
Hpy188I	TCNGA	5 cut(s)	145, 220, 232, 573, 780
Hpy188III	TCNNGA	3 cut(s)	40, 458, 493
Hpy8I	GTNNAC	1 cut(s)	592
Hpy99I	CGWCG	3 cut(s)	59, 474, 713
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	4 cut(s)	280, 673, 819, 841
HpyCH4IV	ACGT	4 cut(s)	113, 251, 497, 711
HpyF10VI	GCNNNNNNNGC	3 cut(s)	515, 524, 796
HpyF3I	CTNAG	1 cut(s)	779
HpySE526I	ACGT	4 cut(s)	113, 251, 497, 711
Hsp92II	CATG	1 cut(s)	787
HspAI	GCGC	1 cut(s)	609
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	5 cut(s)	121, 172, 309, 510, 557
LpnPI	CCDG	9 cut(s)	142, 174, 204, 364, 378, 393, 641, 723, 745
Lsp1109I	GCAGC	1 cut(s)	401
MaeI	CTAG	1 cut(s)	522
MaeII	ACGT	4 cut(s)	113, 251, 497, 711
MaeIII	GTNAC	4 cut(s)	178, 274, 667, 704
MalI	GATC	5 cut(s)	123, 174, 311, 512, 559
MboI	GATC	5 cut(s)	121, 172, 309, 510, 557
MboII	GAAGA	4 cut(s)	319, 412, 626, 655
MfeI	CAATTG	1 cut(s)	833
MluCI	AATT	7 cut(s)	59, 146, 222, 341, 440, 574, 833
MlyI	GAGTC	2 cut(s)	460, 743
MroXI	GAANNNNTTC	1 cut(s)	107
MspI	CCGG	6 cut(s)	129, 161, 191, 351, 365, 380
MunI	CAATTG	1 cut(s)	833
MvnI	CGCG	3 cut(s)	273, 446, 609
MwoI	GCNNNNNNNGC	3 cut(s)	515, 524, 796
NdeII	GATC	5 cut(s)	121, 172, 309, 510, 557
NlaIII	CATG	1 cut(s)	787
NmuCI	GTSAC	2 cut(s)	178, 667
NspI	RCATGY	1 cut(s)	787
PaeI	GCATGC	1 cut(s)	787
PcsI	WCGNNNNNNNCGW	2 cut(s)	257, 478
PdmI	GAANNNNTTC	1 cut(s)	107
PfeI	GAWTC	7 cut(s)	233, 242, 262, 337, 454, 568, 601
PflMI	CCANNNNNTGG	2 cut(s)	96, 821
PinAI	ACCGGT	2 cut(s)	128, 379
PkrI	GCNGC	6 cut(s)	391, 448, 520, 719, 722, 789
Ple19I	CGATCG	1 cut(s)	513
PleI	GAGTC	2 cut(s)	460, 742
PpsI	GAGTC	2 cut(s)	460, 742
PsrI	GAACNNNNNNTAC	2 cut(s)	360, 392
PvuI	CGATCG	1 cut(s)	513
RsaI	GTAC	2 cut(s)	378, 632
RsaNI	GTAC	2 cut(s)	377, 631
SatI	GCNGC	6 cut(s)	390, 447, 519, 718, 721, 788
Sau3AI	GATC	5 cut(s)	121, 172, 309, 510, 557
SchI	GAGTC	2 cut(s)	460, 743
SetI	ASST	7 cut(s)	28, 116, 254, 500, 529, 714, 742
SphI	GCATGC	1 cut(s)	787
Sse9I	AATT	7 cut(s)	59, 146, 222, 341, 440, 574, 833
SsiI	CCGC	8 cut(s)	299, 446, 449, 518, 581, 717, 720, 788
SspMI	CTAG	1 cut(s)	522
TaaI	ACNGT	4 cut(s)	280, 673, 819, 841
TaiI	ACGT	4 cut(s)	116, 254, 500, 714
TasI	AATT	7 cut(s)	59, 146, 222, 341, 440, 574, 833
TatI	WGTACW	1 cut(s)	630
TauI	GCSGC	5 cut(s)	449, 521, 720, 723, 790
TfiI	GAWTC	7 cut(s)	233, 242, 262, 337, 454, 568, 601
TseFI	GTSAC	2 cut(s)	178, 667
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	2 cut(s)	178, 667
TspDTI	ATGAA	1 cut(s)	116
TspGWI	ACGGA	4 cut(s)	57, 655, 710, 785
Van91I	CCANNNNNTGG	2 cut(s)	96, 821
XapI	RAATTY	4 cut(s)	146, 222, 440, 574
XceI	RCATGY	1 cut(s)	787
XmnI	GAANNNNTTC	1 cut(s)	107
XspI	CTAG	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.