Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005129.1

Orthogroup ID

OG0011889

Physical Location & Seq

Genomic Coordinates Reverse (-)

45484 .. 46503

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005129.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

atggaaactgctctcagctcagacatggttgtccttgattacatcaagaatcatcttctcggagacttctctccgatgagcaaaagctctgctcttactgagctaagcgcctcctcctcctccacctcctcctcctcggatctatctagatctcagtccagttcgttgtcgacttctcaatcttccattgaaatctctgattacctcgacaatgaactcttcgacttcacctcgaataatccaatccctaatgattatttctttgagttcgaaaccaagccacaagtgattgacctcacaacccccaaaccaactgatttgtcctcccaaacttcctttgaatttgactccaagcctcaagctaccaacactagtttctttgaattccaaccggaggttcagatcttgaaccaaacagctcccaaacctgtcacctctgcccggaaaccggctctcaccatctctctcccgaacaagaccgaatggatccagttctcgaaatccgagaagcctccagtggtccagaagacggttcagaatgaggagaggaagaagcactacaggggggtccgacaacggccgtggggcaagtacgcggcggagatccgagacccaaaccggagaggctcccgcgtctggctcgggacctttgacacagccatcgaggccgctaaggcttacgaccgggcggcgttcaagctccgaggctccaaagccatcctcaactttcctctcgaagcgggaaaatccgacccgcagcccaagccagcagccgtggttgagagaaaacgtcgtcgtgaggtggaagtgaaaccggaacccgtggtggtgaagaaggagaaagtaacggtgtcggaggaggctgtgagttatattaaggatatgccgttgacaccgtcgagttggacggcggcgtattgggactccgatacggatatgaaagggatcttcaacgttccgccgttgtcgccgttatctccccacccggcgatgggtttttcacaacttatggtcgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

339

Amino Acids

37.89

Weight (kDa)

6.87

Isoelectric Point (pI)

54.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17490 AT5G47230
fragaria_vesca	FvH4_5g19800
malus_domestica	MD04G1058200.v1.1 MD06G1051900.v1.1
prunus_persica	Prupe.5G062000_v2.0.a1
pyrus_communis	pycom04g05190 pycom06g04360
rosa_chinensis	RchiOBHm_Chr7g0204611
rosa_laevigata	RLG00000003444
rosa_multiflora	Rmu_sc0003221.1_g000082 Rmu_sc0005129.1_g000017
rosa_roxburghii	Rroxscaffold_3G00252960
rosa_rugosa	Rorug07G0085200
rosa_samantha	Rh7AG214900 Rh7BG212200 Rh7CG227900 Rh7DG222500
rosa_wichuraiana	Rw7G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	29
AccI	GTMKAC	1 cut(s)	170
AccII	CGCG	2 cut(s)	596, 633
AciI	CCGC	9 cut(s)	596, 599, 631, 669, 689, 740, 755, 911, 959
AclI	AACGTT	1 cut(s)	954
AclWI	GGATC	5 cut(s)	147, 481, 494, 598, 953
AcoI	YGGCCR	1 cut(s)	578
AcsI	RAATTY	2 cut(s)	341, 383
AfaI	GTAC	1 cut(s)	593
AfiI	CCNNNNNNNGG	7 cut(s)	394, 441, 448, 529, 636, 991, 992
AgsI	TTSAA	6 cut(s)	191, 341, 383, 409, 697, 952
AhlI	ACTAGT	1 cut(s)	371
AjuI	GAANNNNNNNTTGG	4 cut(s)	359, 381, 391, 413
AluBI	AGCT	6 cut(s)	18, 87, 103, 362, 419, 700
AluI	AGCT	6 cut(s)	18, 87, 103, 362, 419, 700
Alw26I	GTCTC	2 cut(s)	57, 603
AlwI	GGATC	5 cut(s)	147, 481, 494, 598, 953
Ama87I	CYCGRG	1 cut(s)	641
AoxI	GGCC	2 cut(s)	578, 666
ApeKI	GCWGC	2 cut(s)	757, 770
ApoI	RAATTY	2 cut(s)	341, 383
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	3 cut(s)	520, 568, 645
AsuC2I	CCSGG	3 cut(s)	442, 686, 986
AsuHPI	GGTGA	4 cut(s)	220, 424, 448, 841
AsuII	TTCGAA	1 cut(s)	270
AvaI	CYCGRG	1 cut(s)	641
AvaII	GGWCC	3 cut(s)	520, 568, 645
BamHI	GGATCC	1 cut(s)	486
BarI	GAAGNNNNNNTAC	2 cut(s)	542, 574
BbsI	GAAGAC	1 cut(s)	533
BbvI	GCAGC	2 cut(s)	769, 782
BccI	CCATC	4 cut(s)	467, 668, 725, 985
BceAI	ACGGC	7 cut(s)	565, 593, 758, 871, 924, 946, 955
BcnI	CCSGG	3 cut(s)	442, 686, 986
BcoDI	GTCTC	2 cut(s)	57, 603
BcuI	ACTAGT	1 cut(s)	371
BfaI	CTAG	2 cut(s)	147, 372
BfmI	CTRYAG	1 cut(s)	559
BfoI	RGCGCY	1 cut(s)	111
BglI	GCCNNNNNGGC	2 cut(s)	665, 674
BglII	AGATCT	2 cut(s)	149, 402
BisI	GCNGC	6 cut(s)	597, 669, 690, 758, 771, 912
BlpI	GCTNAGC	1 cut(s)	104
BlsI	GCNGC	6 cut(s)	598, 670, 691, 759, 772, 913
Bme1390I	CCNGG	3 cut(s)	442, 686, 986
Bme18I	GGWCC	3 cut(s)	520, 568, 645
BmeT110I	CYCGRG	1 cut(s)	641
BmgT120I	GGNCC	3 cut(s)	520, 568, 645
BmiI	GGNNCC	6 cut(s)	488, 569, 628, 646, 709, 819
BmrFI	CCNGG	3 cut(s)	442, 686, 986
BpiI	GAAGAC	1 cut(s)	533
BpmI	CTGGAG	1 cut(s)	498
Bpu10I	CCTNAGC	1 cut(s)	672
Bpu1102I	GCTNAGC	1 cut(s)	104
Bpu14I	TTCGAA	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	342
BpuMI	CCSGG	3 cut(s)	442, 686, 986
BsaI	GGTCTC	1 cut(s)	603
BsaJI	CCNNGG	5 cut(s)	135, 581, 703, 774, 822
BsaWI	WCCGGW	3 cut(s)	391, 618, 814
Bsc4I	CCNNNNNNNGG	7 cut(s)	394, 441, 448, 529, 636, 991, 992
Bse118I	RCCGGY	1 cut(s)	448
Bse1I	ACTGG	3 cut(s)	159, 490, 515
BseDI	CCNNGG	5 cut(s)	135, 581, 703, 774, 822
BseGI	GGATG	1 cut(s)	717
BseLI	CCNNNNNNNGG	7 cut(s)	394, 441, 448, 529, 636, 991, 992
BseMII	CTCAG	4 cut(s)	28, 33, 90, 167
BseNI	ACTGG	3 cut(s)	159, 490, 515
BseRI	GAGGAG	8 cut(s)	103, 106, 109, 118, 121, 124, 557, 872
BseX3I	CGGCCG	1 cut(s)	578
BseXI	GCAGC	2 cut(s)	769, 782
Bsh1236I	CGCG	2 cut(s)	596, 633
Bsh1285I	CGRYCG	2 cut(s)	581, 685
BshFI	GGCC	2 cut(s)	580, 668
BsiEI	CGRYCG	2 cut(s)	581, 685
BsiHKCI	CYCGRG	1 cut(s)	641
BsiSI	CCGG	7 cut(s)	392, 442, 449, 619, 685, 815, 986
BslFI	GGGAC	2 cut(s)	658, 935
BslI	CCNNNNNNNGG	7 cut(s)	394, 441, 448, 529, 636, 991, 992
BsmAI	GTCTC	2 cut(s)	57, 603
BsmFI	GGGAC	2 cut(s)	658, 935
BsnI	GGCC	2 cut(s)	580, 668
Bso31I	GGTCTC	1 cut(s)	603
BsoBI	CYCGRG	1 cut(s)	641
Bsp119I	TTCGAA	1 cut(s)	270
Bsp143I	GATC	6 cut(s)	139, 149, 402, 486, 603, 945
Bsp1720I	GCTNAGC	1 cut(s)	104
BspACI	CCGC	9 cut(s)	596, 599, 631, 669, 689, 740, 755, 911, 959
BspANI	GGCC	2 cut(s)	580, 668
BspCNI	CTCAG	4 cut(s)	27, 32, 91, 166
BspFNI	CGCG	2 cut(s)	596, 633
BspLI	GGNNCC	6 cut(s)	488, 569, 628, 646, 709, 819
BspPI	GGATC	5 cut(s)	147, 481, 494, 598, 953
BspT104I	TTCGAA	1 cut(s)	270
BspTNI	GGTCTC	1 cut(s)	603
BsrFI	RCCGGY	1 cut(s)	448
BsrI	ACTGG	3 cut(s)	159, 490, 515
BssAI	RCCGGY	1 cut(s)	448
BssECI	CCNNGG	5 cut(s)	135, 581, 703, 774, 822
BssMI	GATC	6 cut(s)	139, 149, 402, 486, 603, 945
Bst4CI	ACNGT	3 cut(s)	532, 850, 897
Bst6I	CTCTTC	1 cut(s)	224
BstBI	TTCGAA	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	768
BstDEI	CTNAG	6 cut(s)	14, 19, 99, 104, 153, 672
BstDSI	CCRYGG	3 cut(s)	581, 774, 822
BstF5I	GGATG	1 cut(s)	717
BstFNI	CGCG	2 cut(s)	596, 633
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	6 cut(s)	142, 152, 405, 489, 606, 948
BstMAI	GTCTC	2 cut(s)	57, 603
BstMBI	GATC	6 cut(s)	139, 149, 402, 486, 603, 945
BstMCI	CGRYCG	2 cut(s)	581, 685
BstMWI	GCNNNNNNNGC	4 cut(s)	665, 674, 763, 967
BstSCI	CCNGG	3 cut(s)	440, 684, 984
BstSFI	CTRYAG	1 cut(s)	559
BstUI	CGCG	2 cut(s)	596, 633
BstV1I	GCAGC	2 cut(s)	769, 782
BstV2I	GAAGAC	1 cut(s)	533
BstX2I	RGATCY	6 cut(s)	139, 149, 402, 486, 603, 945
BstYI	RGATCY	6 cut(s)	139, 149, 402, 486, 603, 945
BstZI	CGGCCG	1 cut(s)	578
BsuRI	GGCC	2 cut(s)	580, 668
BtgI	CCRYGG	3 cut(s)	581, 774, 822
BtgZI	GCGATG	1 cut(s)	1004
BtsCI	GGATG	1 cut(s)	717
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	1 cut(s)	768
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	448
Cfr13I	GGNCC	3 cut(s)	520, 568, 645
CseI	GACGC	1 cut(s)	622
Csp6I	GTAC	1 cut(s)	592
CspCI	CAANNNNNGTGG	2 cut(s)	563, 598
CviAII	CATG	1 cut(s)	25
CviQI	GTAC	1 cut(s)	592
DdeI	CTNAG	6 cut(s)	14, 19, 99, 104, 153, 672
DpnI	GATC	6 cut(s)	141, 151, 404, 488, 605, 947
DpnII	GATC	6 cut(s)	139, 149, 402, 486, 603, 945
DrdI	GACNNNNNNGTC	1 cut(s)	29
DseDI	GACNNNNNNGTC	1 cut(s)	29
EaeI	YGGCCR	1 cut(s)	578
EagI	CGGCCG	1 cut(s)	578
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
EciI	GGCGGA	2 cut(s)	614, 948
EclXI	CGGCCG	1 cut(s)	578
Eco31I	GGTCTC	1 cut(s)	603
Eco47I	GGWCC	3 cut(s)	520, 568, 645
Eco52I	CGGCCG	1 cut(s)	578
Eco88I	CYCGRG	1 cut(s)	641
EcoO109I	RGGNCCY	1 cut(s)	645
EcoRI	GAATTC	1 cut(s)	383
FaeI	CATG	1 cut(s)	28
FaiI	YATR	6 cut(s)	26, 873, 884, 938, 1010, 1018
FaqI	GGGAC	2 cut(s)	658, 935
FatI	CATG	1 cut(s)	24
FauI	CCCGC	3 cut(s)	638, 733, 762
FblI	GTMKAC	1 cut(s)	170
Fnu4HI	GCNGC	6 cut(s)	597, 669, 690, 758, 771, 912
FokI	GGATG	1 cut(s)	704
Fsp4HI	GCNGC	6 cut(s)	597, 669, 690, 758, 771, 912
FspBI	CTAG	2 cut(s)	147, 372
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	6 cut(s)	597, 669, 690, 758, 771, 912
GsuI	CTGGAG	1 cut(s)	498
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	580, 668
HapII	CCGG	7 cut(s)	392, 442, 449, 619, 685, 815, 986
HgaI	GACGC	1 cut(s)	622
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	1 cut(s)	28
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HincII	GTYRAC	2 cut(s)	171, 891
HindII	GTYRAC	2 cut(s)	171, 891
HinfI	GANTC	3 cut(s)	49, 347, 923
HpaII	CCGG	7 cut(s)	392, 442, 449, 619, 685, 815, 986
HphI	GGTGA	4 cut(s)	220, 424, 448, 841
Hpy166II	GTNNAC	2 cut(s)	171, 891
Hpy188III	TCNNGA	9 cut(s)	46, 147, 406, 469, 496, 523, 643, 734, 797
Hpy8I	GTNNAC	2 cut(s)	171, 891
Hpy99I	CGWCG	3 cut(s)	795, 798, 901
HpyAV	CCTTC	1 cut(s)	829
HpyCH4III	ACNGT	3 cut(s)	532, 850, 897
HpyCH4IV	ACGT	2 cut(s)	790, 954
HpyF10VI	GCNNNNNNNGC	4 cut(s)	665, 674, 763, 967
HpyF3I	CTNAG	6 cut(s)	14, 19, 99, 104, 153, 672
HpySE526I	ACGT	2 cut(s)	790, 954
Hsp92II	CATG	1 cut(s)	28
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	6 cut(s)	139, 149, 402, 486, 603, 945
LmnI	GCTCC	4 cut(s)	424, 632, 705, 713
Lsp1109I	GCAGC	2 cut(s)	769, 782
MaeI	CTAG	2 cut(s)	147, 372
MaeII	ACGT	2 cut(s)	790, 954
MaeIII	GTNAC	2 cut(s)	430, 844
MalI	GATC	6 cut(s)	141, 151, 404, 488, 605, 947
MboI	GATC	6 cut(s)	139, 149, 402, 486, 603, 945
MboII	GAAGA	7 cut(s)	47, 174, 211, 538, 562, 844, 940
MflI	RGATCY	6 cut(s)	139, 149, 402, 486, 603, 945
MluCI	AATT	2 cut(s)	341, 383
MlyI	GAGTC	2 cut(s)	341, 917
MmeI	TCCRAC	5 cut(s)	412, 595, 774, 834, 884
MseI	TTAA	1 cut(s)	876
MspI	CCGG	7 cut(s)	392, 442, 449, 619, 685, 815, 986
MspR9I	CCNGG	3 cut(s)	442, 686, 986
MvnI	CGCG	2 cut(s)	596, 633
MwoI	GCNNNNNNNGC	4 cut(s)	665, 674, 763, 967
NciI	CCSGG	3 cut(s)	442, 686, 986
NdeII	GATC	6 cut(s)	139, 149, 402, 486, 603, 945
NlaIII	CATG	1 cut(s)	28
NlaIV	GGNNCC	6 cut(s)	488, 569, 628, 646, 709, 819
NmuCI	GTSAC	1 cut(s)	430
NspV	TTCGAA	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	49
PflFI	GACNNNGTC	1 cut(s)	895
PkrI	GCNGC	6 cut(s)	598, 670, 691, 759, 772, 913
PleI	GAGTC	2 cut(s)	341, 917
PpsI	GAGTC	2 cut(s)	341, 917
PpuMI	RGGWCCY	1 cut(s)	645
Psp1406I	AACGTT	1 cut(s)	954
Psp5II	RGGWCCY	1 cut(s)	645
PspN4I	GGNNCC	6 cut(s)	488, 569, 628, 646, 709, 819
PspPI	GGNCC	3 cut(s)	520, 568, 645
PspPPI	RGGWCCY	1 cut(s)	645
PsuI	RGATCY	6 cut(s)	139, 149, 402, 486, 603, 945
PsyI	GACNNNGTC	1 cut(s)	895
RsaI	GTAC	1 cut(s)	593
RsaNI	GTAC	1 cut(s)	592
SalI	GTCGAC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	876
SatI	GCNGC	6 cut(s)	597, 669, 690, 758, 771, 912
Sau3AI	GATC	6 cut(s)	139, 149, 402, 486, 603, 945
Sau96I	GGNCC	3 cut(s)	520, 568, 645
SchI	GAGTC	2 cut(s)	341, 917
ScrFI	CCNGG	3 cut(s)	442, 686, 986
SfcI	CTRYAG	1 cut(s)	559
SfuI	TTCGAA	1 cut(s)	270
SinI	GGWCC	3 cut(s)	520, 568, 645
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
SpeI	ACTAGT	1 cut(s)	371
Sse9I	AATT	2 cut(s)	341, 383
SsiI	CCGC	9 cut(s)	596, 599, 631, 669, 689, 740, 755, 911, 959
SspMI	CTAG	2 cut(s)	147, 372
StyD4I	CCNGG	3 cut(s)	440, 684, 984
TaaI	ACNGT	3 cut(s)	532, 850, 897
TaiI	ACGT	2 cut(s)	793, 957
TaqI	TCGA	9 cut(s)	170, 207, 222, 233, 270, 497, 663, 735, 899
TaqII	GACCGA	1 cut(s)	494
TasI	AATT	2 cut(s)	341, 383
TauI	GCSGC	4 cut(s)	599, 671, 692, 914
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	876
Tru9I	TTAA	1 cut(s)	876
TscAI	CASTG	1 cut(s)	522
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	2 cut(s)	757, 770
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	2 cut(s)	228, 953
TspGWI	ACGGA	1 cut(s)	947
TspRI	CASTG	1 cut(s)	522
Tth111I	GACNNNGTC	1 cut(s)	895
VpaK11BI	GGWCC	3 cut(s)	520, 568, 645
XapI	RAATTY	2 cut(s)	341, 383
XbaI	TCTAGA	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	170
XspI	CTAG	2 cut(s)	147, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.