Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0011889

Physical Location & Seq

Genomic Coordinates Forward (+)

48560856 .. 48561866

Gene Structure 1011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003444

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGAAACTGCTCTCAGCTCGGACATGGCTACCCTGGATTACATCAAGAATCATCTCCTCGGAGAGTTCTCTCCGATGAGCAAAAGCTTTGCTCTTACTGAGCTAAGCGCCTCCTCCTCCTCCTCCTCTTCCTCGTCCTCTGATCTATCTAGATCTCAGTCCAGTTCGTTGTCGACTTCTCAATCTTCCATTGAAATCTCTGATTACCTCGACAATGAAATCTTGGACTTCACCTCGAATAATCCGATCCCTAATGATTTCTTTGAGTTCGAAACCAAGCCACAAGTGATTGACCTCACAACCCCCAAACCAACTGATTTGTCCTCCCAAACTTCCTTTGAATTTGACTCCAAGCCTCAAGTTACCAACACTAGTTTTTTTGAAGAGTTTCAGATCTTGAACCAAACAGCTCCCAAACCGGTCACTTCTGCCCGGAAACCGGCCCTCACCATCTCTCTCCCGAACAAGACCGAATGGATCCAGTTCTCGAAACCCGAGAAGCCTCAAGTGGTCCAGAAAACGGTTCAGAATGAGGAAAGGAAGAAGCACTACAGGGGGGTCCGACAACGGCCGTGGGGCAAGTACGCGGCGGAGATCCGAGACCCAAACCGGAGAGGTTCCCGGGTCTGGCTTGGGACCTTTGACACAGCCATCGAGGCCGCTAAGGCTTACGATAGGGCGGCGTTCAAGCTCCGAGGCTCCAAAGCCATCCTCAACTTTCCTCTCGAAGCGGGGAAATCCGACCCGCAGCCTAAACCAGCAGCCGTGGTTGAGAGAAAACGACGTCGTGAGGTGGAAGTGAAACCGGAACCCGTGGTGGTGAAGAAGGAGAAAGTAACGGTGTCCGAGGAGGCTGTGAGTTATATTAAGGATATGCCGTTGACACCGTCGAGTTGGACGGCGGCGTATTGGGACTCCGATACGGATATGAAAGGGATCTTCAACGTTCCGCCGTTGTCGCCGTTATCTCCCCACCCGCCGATGGGTTTTTCACAACTTATGGTCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

337

Amino Acids

37.58

Weight (kDa)

6.88

Isoelectric Point (pI)

54.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	183 - 234	3.1e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17490 AT5G47230
fragaria_vesca	FvH4_5g19800
malus_domestica	MD04G1058200.v1.1 MD06G1051900.v1.1
prunus_persica	Prupe.5G062000_v2.0.a1
pyrus_communis	pycom04g05190 pycom06g04360
rosa_chinensis	RchiOBHm_Chr7g0204611
rosa_laevigata	RLG00000003444
rosa_multiflora	Rmu_sc0003221.1_g000082 Rmu_sc0005129.1_g000017
rosa_roxburghii	Rroxscaffold_3G00252960
rosa_rugosa	Rorug07G0085200
rosa_samantha	Rh7AG214900 Rh7BG212200 Rh7CG227900 Rh7DG222500
rosa_wichuraiana	Rw7G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	787
AccI	GTMKAC	1 cut(s)	173
AccII	CGCG	1 cut(s)	587
AciI	CCGC	9 cut(s)	587, 590, 660, 680, 731, 746, 902, 950, 977
AclI	AACGTT	1 cut(s)	945
AclWI	GGATC	5 cut(s)	241, 472, 485, 589, 944
AcoI	YGGCCR	1 cut(s)	569
AcsI	RAATTY	1 cut(s)	341
AcyI	GRCGYC	1 cut(s)	784
AfaI	GTAC	1 cut(s)	584
AfiI	CCNNNNNNNGG	5 cut(s)	439, 520, 627, 982, 983
AgeI	ACCGGT	1 cut(s)	418
AgsI	TTSAA	6 cut(s)	194, 341, 383, 400, 688, 943
AhlI	ACTAGT	1 cut(s)	371
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	5 cut(s)	18, 87, 103, 410, 691
AluI	AGCT	5 cut(s)	18, 87, 103, 410, 691
Alw26I	GTCTC	1 cut(s)	594
AlwI	GGATC	5 cut(s)	241, 472, 485, 589, 944
Ama87I	CYCGRG	2 cut(s)	494, 621
AoxI	GGCC	3 cut(s)	441, 569, 657
ApeKI	GCWGC	2 cut(s)	748, 761
ApoI	RAATTY	1 cut(s)	341
AsiGI	ACCGGT	1 cut(s)	418
Asp700I	GAANNNNTTC	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	4 cut(s)	442, 511, 559, 636
AsuC2I	CCSGG	3 cut(s)	433, 622, 623
AsuHPI	GGTGA	3 cut(s)	223, 439, 832
AsuII	TTCGAA	1 cut(s)	270
AvaI	CYCGRG	2 cut(s)	494, 621
AvaII	GGWCC	3 cut(s)	511, 559, 636
BamHI	GGATCC	1 cut(s)	477
BarI	GAAGNNNNNNTAC	2 cut(s)	533, 565
BbvI	GCAGC	2 cut(s)	760, 773
BccI	CCATC	4 cut(s)	458, 659, 716, 976
BceAI	ACGGC	7 cut(s)	556, 584, 749, 862, 915, 937, 946
BciT130I	CCWGG	1 cut(s)	35
BcnI	CCSGG	3 cut(s)	433, 622, 623
BcoDI	GTCTC	1 cut(s)	594
BcuI	ACTAGT	1 cut(s)	371
BfaI	CTAG	2 cut(s)	150, 372
BfmI	CTRYAG	1 cut(s)	550
BfoI	RGCGCY	1 cut(s)	111
BglI	GCCNNNNNGGC	2 cut(s)	656, 665
BglII	AGATCT	2 cut(s)	152, 393
BisI	GCNGC	6 cut(s)	588, 660, 681, 749, 762, 903
BlpI	GCTNAGC	1 cut(s)	104
BlsI	GCNGC	6 cut(s)	589, 661, 682, 750, 763, 904
Bme1390I	CCNGG	4 cut(s)	35, 433, 622, 623
Bme18I	GGWCC	3 cut(s)	511, 559, 636
BmeT110I	CYCGRG	2 cut(s)	494, 621
BmgT120I	GGNCC	4 cut(s)	442, 511, 559, 636
BmiI	GGNNCC	6 cut(s)	479, 560, 619, 637, 700, 810
BmrFI	CCNGG	4 cut(s)	35, 433, 622, 623
Bpu10I	CCTNAGC	1 cut(s)	663
Bpu1102I	GCTNAGC	1 cut(s)	104
Bpu14I	TTCGAA	1 cut(s)	270
BpuEI	CTTGAG	2 cut(s)	342, 489
BpuMI	CCSGG	3 cut(s)	433, 622, 623
BsaHI	GRCGYC	1 cut(s)	784
BsaI	GGTCTC	1 cut(s)	594
BsaJI	CCNNGG	8 cut(s)	33, 58, 572, 621, 694, 765, 813, 846
BsaWI	WCCGGW	3 cut(s)	418, 609, 805
Bsc4I	CCNNNNNNNGG	5 cut(s)	439, 520, 627, 982, 983
Bse118I	RCCGGY	2 cut(s)	418, 439
Bse1I	ACTGG	2 cut(s)	162, 481
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	8 cut(s)	33, 58, 572, 621, 694, 765, 813, 846
BseGI	GGATG	1 cut(s)	708
BseLI	CCNNNNNNNGG	5 cut(s)	439, 520, 627, 982, 983
BseMII	CTCAG	3 cut(s)	28, 90, 170
BseNI	ACTGG	2 cut(s)	162, 481
BseRI	GAGGAG	7 cut(s)	47, 103, 106, 109, 112, 115, 863
BseX3I	CGGCCG	1 cut(s)	569
BseXI	GCAGC	2 cut(s)	760, 773
Bsh1236I	CGCG	1 cut(s)	587
Bsh1285I	CGRYCG	1 cut(s)	572
BshFI	GGCC	3 cut(s)	443, 571, 659
BshTI	ACCGGT	1 cut(s)	418
BsiEI	CGRYCG	1 cut(s)	572
BsiHKCI	CYCGRG	2 cut(s)	494, 621
BsiSI	CCGG	6 cut(s)	419, 433, 440, 610, 622, 806
BslFI	GGGAC	2 cut(s)	649, 926
BslI	CCNNNNNNNGG	5 cut(s)	439, 520, 627, 982, 983
BsmAI	GTCTC	1 cut(s)	594
BsmFI	GGGAC	2 cut(s)	649, 926
BsnI	GGCC	3 cut(s)	443, 571, 659
Bso31I	GGTCTC	1 cut(s)	594
BsoBI	CYCGRG	2 cut(s)	494, 621
Bsp119I	TTCGAA	1 cut(s)	270
Bsp143I	GATC	7 cut(s)	142, 152, 246, 393, 477, 594, 936
Bsp1720I	GCTNAGC	1 cut(s)	104
BspACI	CCGC	9 cut(s)	587, 590, 660, 680, 731, 746, 902, 950, 977
BspANI	GGCC	3 cut(s)	443, 571, 659
BspCNI	CTCAG	3 cut(s)	27, 91, 169
BspFNI	CGCG	1 cut(s)	587
BspLI	GGNNCC	6 cut(s)	479, 560, 619, 637, 700, 810
BspPI	GGATC	5 cut(s)	241, 472, 485, 589, 944
BspT104I	TTCGAA	1 cut(s)	270
BspTNI	GGTCTC	1 cut(s)	594
BsrFI	RCCGGY	2 cut(s)	418, 439
BsrI	ACTGG	2 cut(s)	162, 481
BssAI	RCCGGY	2 cut(s)	418, 439
BssECI	CCNNGG	8 cut(s)	33, 58, 572, 621, 694, 765, 813, 846
BssMI	GATC	7 cut(s)	142, 152, 246, 393, 477, 594, 936
BssNI	GRCGYC	1 cut(s)	784
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	3 cut(s)	523, 841, 888
Bst6I	CTCTTC	2 cut(s)	133, 378
BstACI	GRCGYC	1 cut(s)	784
BstBI	TTCGAA	1 cut(s)	270
BstDEI	CTNAG	5 cut(s)	14, 99, 104, 156, 663
BstDSI	CCRYGG	3 cut(s)	572, 765, 813
BstF5I	GGATG	1 cut(s)	708
BstFNI	CGCG	1 cut(s)	587
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	7 cut(s)	145, 155, 249, 396, 480, 597, 939
BstMAI	GTCTC	1 cut(s)	594
BstMBI	GATC	7 cut(s)	142, 152, 246, 393, 477, 594, 936
BstMCI	CGRYCG	1 cut(s)	572
BstMWI	GCNNNNNNNGC	3 cut(s)	656, 665, 958
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	4 cut(s)	33, 431, 620, 621
BstSFI	CTRYAG	1 cut(s)	550
BstUI	CGCG	1 cut(s)	587
BstV1I	GCAGC	2 cut(s)	760, 773
BstX2I	RGATCY	5 cut(s)	152, 393, 477, 594, 936
BstYI	RGATCY	5 cut(s)	152, 393, 477, 594, 936
BstZI	CGGCCG	1 cut(s)	569
BsuRI	GGCC	3 cut(s)	443, 571, 659
BtgI	CCRYGG	3 cut(s)	572, 765, 813
BtsCI	GGATG	1 cut(s)	708
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	2 cut(s)	418, 439
Cfr13I	GGNCC	4 cut(s)	442, 511, 559, 636
Cfr9I	CCCGGG	1 cut(s)	621
Csp6I	GTAC	1 cut(s)	583
CspAI	ACCGGT	1 cut(s)	418
CspCI	CAANNNNNGTGG	2 cut(s)	554, 589
CviAII	CATG	1 cut(s)	25
CviQI	GTAC	1 cut(s)	583
DdeI	CTNAG	5 cut(s)	14, 99, 104, 156, 663
DpnI	GATC	7 cut(s)	144, 154, 248, 395, 479, 596, 938
DpnII	GATC	7 cut(s)	142, 152, 246, 393, 477, 594, 936
EaeI	YGGCCR	1 cut(s)	569
EagI	CGGCCG	1 cut(s)	569
Eam1104I	CTCTTC	2 cut(s)	133, 378
EarI	CTCTTC	2 cut(s)	133, 378
EciI	GGCGGA	2 cut(s)	605, 939
EclXI	CGGCCG	1 cut(s)	569
Eco31I	GGTCTC	1 cut(s)	594
Eco47I	GGWCC	3 cut(s)	511, 559, 636
Eco52I	CGGCCG	1 cut(s)	569
Eco88I	CYCGRG	2 cut(s)	494, 621
EcoO109I	RGGNCCY	1 cut(s)	636
EcoRII	CCWGG	1 cut(s)	33
FaeI	CATG	1 cut(s)	28
FaiI	YATR	6 cut(s)	26, 864, 875, 929, 1001, 1009
FaqI	GGGAC	2 cut(s)	649, 926
FatI	CATG	1 cut(s)	24
FauI	CCCGC	3 cut(s)	724, 753, 984
FblI	GTMKAC	1 cut(s)	173
Fnu4HI	GCNGC	6 cut(s)	588, 660, 681, 749, 762, 903
FokI	GGATG	1 cut(s)	695
Fsp4HI	GCNGC	6 cut(s)	588, 660, 681, 749, 762, 903
FspBI	CTAG	2 cut(s)	150, 372
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	6 cut(s)	588, 660, 681, 749, 762, 903
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	443, 571, 659
HapII	CCGG	6 cut(s)	419, 433, 440, 610, 622, 806
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	784
Hin1II	CATG	1 cut(s)	28
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HincII	GTYRAC	2 cut(s)	174, 882
HindII	GTYRAC	2 cut(s)	174, 882
HindIII	AAGCTT	1 cut(s)	85
HinfI	GANTC	3 cut(s)	49, 347, 914
HpaII	CCGG	6 cut(s)	419, 433, 440, 610, 622, 806
HphI	GGTGA	3 cut(s)	223, 439, 832
Hpy166II	GTNNAC	2 cut(s)	174, 882
Hpy188III	TCNNGA	8 cut(s)	46, 150, 397, 460, 487, 514, 725, 788
Hpy8I	GTNNAC	2 cut(s)	174, 882
Hpy99I	CGWCG	3 cut(s)	786, 789, 892
HpyAV	CCTTC	1 cut(s)	820
HpyCH4III	ACNGT	3 cut(s)	523, 841, 888
HpyCH4IV	ACGT	2 cut(s)	784, 945
HpyF10VI	GCNNNNNNNGC	3 cut(s)	656, 665, 958
HpyF3I	CTNAG	5 cut(s)	14, 99, 104, 156, 663
HpySE526I	ACGT	2 cut(s)	784, 945
Hsp92I	GRCGYC	1 cut(s)	784
Hsp92II	CATG	1 cut(s)	28
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	7 cut(s)	142, 152, 246, 393, 477, 594, 936
LmnI	GCTCC	3 cut(s)	415, 696, 704
Lsp1109I	GCAGC	2 cut(s)	760, 773
MaeI	CTAG	2 cut(s)	150, 372
MaeII	ACGT	2 cut(s)	784, 945
MaeIII	GTNAC	3 cut(s)	361, 421, 835
MalI	GATC	7 cut(s)	144, 154, 248, 395, 479, 596, 938
MboI	GATC	7 cut(s)	142, 152, 246, 393, 477, 594, 936
MboII	GAAGA	6 cut(s)	120, 177, 395, 553, 835, 931
MflI	RGATCY	5 cut(s)	152, 393, 477, 594, 936
MluCI	AATT	1 cut(s)	341
MlyI	GAGTC	2 cut(s)	341, 908
MmeI	TCCRAC	3 cut(s)	586, 765, 875
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	1 cut(s)	867
MspI	CCGG	6 cut(s)	419, 433, 440, 610, 622, 806
MspR9I	CCNGG	4 cut(s)	35, 433, 622, 623
MvaI	CCWGG	1 cut(s)	35
MvnI	CGCG	1 cut(s)	587
MwoI	GCNNNNNNNGC	3 cut(s)	656, 665, 958
NciI	CCSGG	3 cut(s)	433, 622, 623
NdeII	GATC	7 cut(s)	142, 152, 246, 393, 477, 594, 936
NlaIII	CATG	1 cut(s)	28
NlaIV	GGNNCC	6 cut(s)	479, 560, 619, 637, 700, 810
NmuCI	GTSAC	1 cut(s)	421
NspV	TTCGAA	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	1 cut(s)	242
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	49
PflFI	GACNNNGTC	1 cut(s)	886
PinAI	ACCGGT	1 cut(s)	418
PkrI	GCNGC	6 cut(s)	589, 661, 682, 750, 763, 904
PleI	GAGTC	2 cut(s)	341, 908
PpsI	GAGTC	2 cut(s)	341, 908
PpuMI	RGGWCCY	1 cut(s)	636
Psp1406I	AACGTT	1 cut(s)	945
Psp5II	RGGWCCY	1 cut(s)	636
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	6 cut(s)	479, 560, 619, 637, 700, 810
PspPI	GGNCC	4 cut(s)	442, 511, 559, 636
PspPPI	RGGWCCY	1 cut(s)	636
PsuI	RGATCY	5 cut(s)	152, 393, 477, 594, 936
PsyI	GACNNNGTC	1 cut(s)	886
RsaI	GTAC	1 cut(s)	584
RsaNI	GTAC	1 cut(s)	583
SalI	GTCGAC	1 cut(s)	172
SaqAI	TTAA	1 cut(s)	867
SatI	GCNGC	6 cut(s)	588, 660, 681, 749, 762, 903
Sau3AI	GATC	7 cut(s)	142, 152, 246, 393, 477, 594, 936
Sau96I	GGNCC	4 cut(s)	442, 511, 559, 636
SchI	GAGTC	2 cut(s)	341, 908
ScrFI	CCNGG	4 cut(s)	35, 433, 622, 623
SfcI	CTRYAG	1 cut(s)	550
SfuI	TTCGAA	1 cut(s)	270
SinI	GGWCC	3 cut(s)	511, 559, 636
SmaI	CCCGGG	1 cut(s)	623
SmlI	CTYRAG	2 cut(s)	357, 504
SmoI	CTYRAG	2 cut(s)	357, 504
SpeI	ACTAGT	1 cut(s)	371
Sse9I	AATT	1 cut(s)	341
SsiI	CCGC	9 cut(s)	587, 590, 660, 680, 731, 746, 902, 950, 977
SspMI	CTAG	2 cut(s)	150, 372
StyD4I	CCNGG	4 cut(s)	33, 431, 620, 621
TaaI	ACNGT	3 cut(s)	523, 841, 888
TaiI	ACGT	2 cut(s)	787, 948
TaqI	TCGA	8 cut(s)	173, 210, 236, 270, 488, 654, 726, 890
TaqII	GACCGA	1 cut(s)	485
TasI	AATT	1 cut(s)	341
TauI	GCSGC	4 cut(s)	590, 662, 683, 905
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	867
Tru9I	TTAA	1 cut(s)	867
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	2 cut(s)	748, 761
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	2 cut(s)	231, 944
TspGWI	ACGGA	1 cut(s)	938
TspMI	CCCGGG	1 cut(s)	621
Tth111I	GACNNNGTC	1 cut(s)	886
VpaK11BI	GGWCC	3 cut(s)	511, 559, 636
XapI	RAATTY	1 cut(s)	341
XbaI	TCTAGA	1 cut(s)	149
XmaI	CCCGGG	1 cut(s)	621
XmiI	GTMKAC	1 cut(s)	173
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	2 cut(s)	150, 372
ZraI	GACGTC	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.