Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011889

Physical Location & Seq

Genomic Coordinates Reverse (-)

11637732 .. 11638778

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGAACCTGCTCTCGACATGGCTGCCCTCGATTTCATCAAGAACCATCTTCTCGGCGAGTTCTCTCCCATCTGCAAAAGCTCTGGCTGCTCTGTTGTTACTGAGCTAACAACCACCACCACCACCTCCTCCTCCTCCTCCTCATCATCATCATCTTCGGATATATCCAGATCCCAGTCTACTTCTCAATCTTCCATCGAAATCTCTGACTACTTCGACAATGAACTCTTCGACTTCACCTCCAACAATATTCCCATCCCTGACGACTTCTTCGAGTTCGAAACCAAGCCACAAGTGATTGACCTCACAACCCCAAAACCAACTGATCTGACCTCCCAAATATCCTTTGAGTTTGACTCCAAGCCTCAGTTTAACAGCTCTGCTAGTTTCTTCGAGTTTCAACCGGAGGTTCAGATCTTGAACCAAACAGCTCCCAAACCGGTCACTACTTCTGCCCGGAAACCTGCCCTCACCATCTCTCTCCCCAACAAGACCGAATGGATTCAGTTCTCGAATTCCGACAAGAGTCAATTAGTGGTCCAGAAAACCGTTCAGAATGAGGAGAAGAAGAAGCACTACCGCGGCGTCCGACAAAGGCCGTGGGGCAAATACGCGGCGGAGATCCGAGACCCGAACCGAAGAGGCTCCCGGGTCTGGCTTGGAACCTTTGACGCAGCCATCGAGGCCGCCAAGGCTTACGACCGGGCGGCGTTTAAGCTCCGAGGCTCCAAAGCCATCCTTAACTTCCCTCTAGAAGCCGGGAAATATGACACCCCGCAGCCTAATAAGACGGCGGCCGTGGTTGAGAGAAAACGACGTCGTGAGGAGGAAGTGCAACCGGAAGTACCCGTGGTGGTGAAGAAGGAGAAAGTAACGGTATCGGAGGAGGCTGTGAGTTATATTAAGGATATGCCGTTGACACCGTCGAGTTGGACGGCGGCGTTGTGGGACTCCGATGAGGATGTGAAAGGGATCTTCAGTGTTCCGCCGTTGTCGCCGTTATCTCCCCACCCAGCGATGGGTTTTTCACAACTTATGGTCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

349

Amino Acids

38.77

Weight (kDa)

5.49

Isoelectric Point (pI)

59.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	192 - 243	7.3e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17490 AT5G47230
fragaria_vesca	FvH4_5g19800
malus_domestica	MD04G1058200.v1.1 MD06G1051900.v1.1
prunus_persica	Prupe.5G062000_v2.0.a1
pyrus_communis	pycom04g05190 pycom06g04360
rosa_chinensis	RchiOBHm_Chr7g0204611
rosa_laevigata	RLG00000003444
rosa_multiflora	Rmu_sc0003221.1_g000082 Rmu_sc0005129.1_g000017
rosa_roxburghii	Rroxscaffold_3G00252960
rosa_rugosa	Rorug07G0085200
rosa_samantha	Rh7AG214900 Rh7BG212200 Rh7CG227900 Rh7DG222500
rosa_wichuraiana	Rw7G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	820
Acc36I	ACCTGC	2 cut(s)	16, 472
AccI	GTMKAC	1 cut(s)	179
AccII	CGCG	2 cut(s)	582, 614
AclWI	GGATC	3 cut(s)	165, 616, 980
AcoI	YGGCCR	1 cut(s)	795
AcsI	RAATTY	1 cut(s)	514
AcuI	CTGAAG	1 cut(s)	961
AcyI	GRCGYC	2 cut(s)	585, 817
AfaI	GTAC	1 cut(s)	846
AfiI	CCNNNNNNNGG	3 cut(s)	654, 1018, 1019
AgeI	ACCGGT	1 cut(s)	439
AgsI	TTSAA	2 cut(s)	401, 421
AluBI	AGCT	5 cut(s)	81, 106, 378, 431, 718
AluI	AGCT	5 cut(s)	81, 106, 378, 431, 718
Alw26I	GTCTC	1 cut(s)	621
AlwI	GGATC	3 cut(s)	165, 616, 980
Ama87I	CYCGRG	1 cut(s)	648
AoxI	GGCC	3 cut(s)	596, 684, 795
ApeKI	GCWGC	4 cut(s)	23, 87, 674, 778
ApoI	RAATTY	1 cut(s)	514
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AsiGI	ACCGGT	1 cut(s)	439
Asp700I	GAANNNNTTC	1 cut(s)	501
AspS9I	GGNCC	1 cut(s)	538
AsuC2I	CCSGG	5 cut(s)	457, 649, 650, 704, 760
AsuHPI	GGTGA	3 cut(s)	229, 463, 868
AsuII	TTCGAA	1 cut(s)	279
AvaI	CYCGRG	1 cut(s)	648
AvaII	GGWCC	1 cut(s)	538
BarI	GAAGNNNNNNTAC	2 cut(s)	560, 592
BbvI	GCAGC	4 cut(s)	10, 74, 686, 790
BccI	CCATC	8 cut(s)	54, 77, 203, 263, 482, 686, 743, 1012
BceAI	ACGGC	7 cut(s)	583, 782, 807, 898, 951, 973, 982
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BcnI	CCSGG	5 cut(s)	457, 649, 650, 704, 760
BcoDI	GTCTC	1 cut(s)	621
BfaI	CTAG	2 cut(s)	384, 752
BfuAI	ACCTGC	2 cut(s)	16, 472
BglI	GCCNNNNNGGC	2 cut(s)	683, 692
BglII	AGATCT	1 cut(s)	414
Bme1390I	CCNGG	5 cut(s)	457, 649, 650, 704, 760
Bme18I	GGWCC	1 cut(s)	538
BmeT110I	CYCGRG	1 cut(s)	648
BmgT120I	GGNCC	1 cut(s)	538
BmiI	GGNNCC	4 cut(s)	6, 646, 664, 727
BmrFI	CCNGG	5 cut(s)	457, 649, 650, 704, 760
BmrI	ACTGGG	1 cut(s)	169
BmuI	ACTGGG	1 cut(s)	169
BoxI	GACNNNNGTC	1 cut(s)	525
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
Bpu14I	TTCGAA	1 cut(s)	279
BpuMI	CCSGG	5 cut(s)	457, 649, 650, 704, 760
BsaHI	GRCGYC	2 cut(s)	585, 817
BsaI	GGTCTC	1 cut(s)	621
BsaJI	CCNNGG	7 cut(s)	580, 599, 648, 690, 721, 798, 849
BsaWI	WCCGGW	3 cut(s)	403, 439, 838
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	3 cut(s)	654, 1018, 1019
Bse118I	RCCGGY	1 cut(s)	439
Bse1I	ACTGG	1 cut(s)	175
BseDI	CCNNGG	7 cut(s)	580, 599, 648, 690, 721, 798, 849
BseGI	GGATG	3 cut(s)	255, 735, 967
BseLI	CCNNNNNNNGG	3 cut(s)	654, 1018, 1019
BseMII	CTCAG	2 cut(s)	93, 380
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	8 cut(s)	118, 121, 124, 127, 130, 575, 839, 899
BseX3I	CGGCCG	1 cut(s)	795
BseXI	GCAGC	4 cut(s)	10, 74, 686, 790
BseYI	CCCAGC	1 cut(s)	1012
Bsh1236I	CGCG	2 cut(s)	582, 614
Bsh1285I	CGRYCG	2 cut(s)	703, 798
BshFI	GGCC	3 cut(s)	598, 686, 797
BshTI	ACCGGT	1 cut(s)	439
BsiEI	CGRYCG	2 cut(s)	703, 798
BsiHKCI	CYCGRG	1 cut(s)	648
BsiSI	CCGG	7 cut(s)	404, 440, 457, 649, 703, 759, 839
BslFI	GGGAC	1 cut(s)	962
BslI	CCNNNNNNNGG	3 cut(s)	654, 1018, 1019
BsmAI	GTCTC	1 cut(s)	621
BsmFI	GGGAC	1 cut(s)	962
BsnI	GGCC	3 cut(s)	598, 686, 797
Bso31I	GGTCTC	1 cut(s)	621
BsoBI	CYCGRG	1 cut(s)	648
Bsp119I	TTCGAA	1 cut(s)	279
Bsp143I	GATC	5 cut(s)	170, 325, 414, 621, 972
BspANI	GGCC	3 cut(s)	598, 686, 797
BspCNI	CTCAG	2 cut(s)	94, 379
BspFNI	CGCG	2 cut(s)	582, 614
BspLI	GGNNCC	4 cut(s)	6, 646, 664, 727
BspMI	ACCTGC	2 cut(s)	16, 472
BspPI	GGATC	3 cut(s)	165, 616, 980
BspT104I	TTCGAA	1 cut(s)	279
BspTNI	GGTCTC	1 cut(s)	621
BsrFI	RCCGGY	1 cut(s)	439
BsrI	ACTGG	1 cut(s)	175
BssAI	RCCGGY	1 cut(s)	439
BssECI	CCNNGG	7 cut(s)	580, 599, 648, 690, 721, 798, 849
BssMI	GATC	5 cut(s)	170, 325, 414, 621, 972
BssNI	GRCGYC	2 cut(s)	585, 817
BssT1I	CCWWGG	1 cut(s)	690
Bst4CI	ACNGT	3 cut(s)	550, 877, 924
Bst6I	CTCTTC	2 cut(s)	233, 634
BstACI	GRCGYC	2 cut(s)	585, 817
BstBI	TTCGAA	1 cut(s)	279
BstDEI	CTNAG	2 cut(s)	102, 366
BstDSI	CCRYGG	4 cut(s)	580, 599, 798, 849
BstF5I	GGATG	3 cut(s)	255, 735, 967
BstFNI	CGCG	2 cut(s)	582, 614
BstKTI	GATC	5 cut(s)	173, 328, 417, 624, 975
BstMAI	GTCTC	1 cut(s)	621
BstMBI	GATC	5 cut(s)	170, 325, 414, 621, 972
BstMCI	CGRYCG	2 cut(s)	703, 798
BstMWI	GCNNNNNNNGC	4 cut(s)	87, 683, 692, 994
BstPAI	GACNNNNGTC	1 cut(s)	525
BstSCI	CCNGG	5 cut(s)	455, 647, 648, 702, 758
BstUI	CGCG	2 cut(s)	582, 614
BstV1I	GCAGC	4 cut(s)	10, 74, 686, 790
BstX2I	RGATCY	4 cut(s)	170, 414, 621, 972
BstYI	RGATCY	4 cut(s)	170, 414, 621, 972
BstZI	CGGCCG	1 cut(s)	795
BsuRI	GGCC	3 cut(s)	598, 686, 797
BtgI	CCRYGG	4 cut(s)	580, 599, 798, 849
BtgZI	GCGATG	1 cut(s)	1031
BtsCI	GGATG	3 cut(s)	255, 735, 967
BtsIMutI	CAGTG	1 cut(s)	985
BveI	ACCTGC	2 cut(s)	16, 472
Cfr10I	RCCGGY	1 cut(s)	439
Cfr13I	GGNCC	1 cut(s)	538
Cfr42I	CCGCGG	1 cut(s)	583
Cfr9I	CCCGGG	1 cut(s)	648
CseI	GACGC	2 cut(s)	574, 680
Csp6I	GTAC	1 cut(s)	845
CspAI	ACCGGT	1 cut(s)	439
CspCI	CAANNNNNGTGG	2 cut(s)	581, 616
CviAII	CATG	1 cut(s)	19
CviQI	GTAC	1 cut(s)	845
DdeI	CTNAG	2 cut(s)	102, 366
DpnI	GATC	5 cut(s)	172, 327, 416, 623, 974
DpnII	GATC	5 cut(s)	170, 325, 414, 621, 972
EaeI	YGGCCR	1 cut(s)	795
EagI	CGGCCG	1 cut(s)	795
Eam1104I	CTCTTC	2 cut(s)	233, 634
EarI	CTCTTC	2 cut(s)	233, 634
EciI	GGCGGA	2 cut(s)	632, 975
EclXI	CGGCCG	1 cut(s)	795
Eco130I	CCWWGG	1 cut(s)	690
Eco31I	GGTCTC	1 cut(s)	621
Eco47I	GGWCC	1 cut(s)	538
Eco52I	CGGCCG	1 cut(s)	795
Eco57I	CTGAAG	1 cut(s)	961
Eco88I	CYCGRG	1 cut(s)	648
EcoRI	GAATTC	1 cut(s)	514
EcoT14I	CCWWGG	1 cut(s)	690
ErhI	CCWWGG	1 cut(s)	690
FaeI	CATG	1 cut(s)	22
FaiI	YATR	7 cut(s)	20, 164, 768, 900, 911, 1037, 1045
FalI	AAGNNNNNCTT	2 cut(s)	723, 755
FaqI	GGGAC	1 cut(s)	962
FatI	CATG	1 cut(s)	18
FauI	CCCGC	1 cut(s)	783
FblI	GTMKAC	1 cut(s)	179
FokI	GGATG	3 cut(s)	242, 722, 974
FspBI	CTAG	2 cut(s)	384, 752
GsaI	CCCAGC	1 cut(s)	1016
HaeIII	GGCC	3 cut(s)	598, 686, 797
HapII	CCGG	7 cut(s)	404, 440, 457, 649, 703, 759, 839
HgaI	GACGC	2 cut(s)	574, 680
Hin1I	GRCGYC	2 cut(s)	585, 817
Hin1II	CATG	1 cut(s)	22
HincII	GTYRAC	1 cut(s)	918
HindII	GTYRAC	1 cut(s)	918
HinfI	GANTC	4 cut(s)	356, 502, 526, 950
HpaII	CCGG	7 cut(s)	404, 440, 457, 649, 703, 759, 839
HphI	GGTGA	3 cut(s)	229, 463, 868
Hpy166II	GTNNAC	2 cut(s)	180, 918
Hpy188III	TCNNGA	8 cut(s)	14, 40, 168, 418, 511, 541, 752, 821
Hpy8I	GTNNAC	2 cut(s)	180, 918
Hpy99I	CGWCG	3 cut(s)	819, 822, 928
HpyAV	CCTTC	1 cut(s)	856
HpyCH4III	ACNGT	3 cut(s)	550, 877, 924
HpyCH4IV	ACGT	1 cut(s)	817
HpyCH4V	TGCA	2 cut(s)	75, 835
HpyF10VI	GCNNNNNNNGC	4 cut(s)	87, 683, 692, 994
HpyF3I	CTNAG	2 cut(s)	102, 366
HpySE526I	ACGT	1 cut(s)	817
Hsp92I	GRCGYC	2 cut(s)	585, 817
Hsp92II	CATG	1 cut(s)	22
KspI	CCGCGG	1 cut(s)	583
Kzo9I	GATC	5 cut(s)	170, 325, 414, 621, 972
LmnI	GCTCC	4 cut(s)	436, 650, 723, 731
Lsp1109I	GCAGC	4 cut(s)	10, 74, 686, 790
MaeI	CTAG	2 cut(s)	384, 752
MaeII	ACGT	1 cut(s)	817
MaeIII	GTNAC	3 cut(s)	97, 442, 871
MalI	GATC	5 cut(s)	172, 327, 416, 623, 974
MboI	GATC	5 cut(s)	170, 325, 414, 621, 972
MflI	RGATCY	4 cut(s)	170, 414, 621, 972
MluCI	AATT	2 cut(s)	514, 530
MlyI	GAGTC	3 cut(s)	350, 535, 944
MmeI	TCCRAC	4 cut(s)	267, 543, 613, 911
MroXI	GAANNNNTTC	1 cut(s)	501
MseI	TTAA	4 cut(s)	372, 714, 741, 903
MspA1I	CMGCKG	1 cut(s)	582
MspI	CCGG	7 cut(s)	404, 440, 457, 649, 703, 759, 839
MspR9I	CCNGG	5 cut(s)	457, 649, 650, 704, 760
MvnI	CGCG	2 cut(s)	582, 614
MwoI	GCNNNNNNNGC	4 cut(s)	87, 683, 692, 994
NciI	CCSGG	5 cut(s)	457, 649, 650, 704, 760
NdeII	GATC	5 cut(s)	170, 325, 414, 621, 972
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	4 cut(s)	6, 646, 664, 727
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	442
NspV	TTCGAA	1 cut(s)	279
PcsI	WCGNNNNNNNCGW	2 cut(s)	270, 678
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	1 cut(s)	502
PflFI	GACNNNGTC	1 cut(s)	922
PinAI	ACCGGT	1 cut(s)	439
PleI	GAGTC	3 cut(s)	350, 534, 944
PpsI	GAGTC	3 cut(s)	350, 534, 944
PshAI	GACNNNNGTC	1 cut(s)	525
PspFI	CCCAGC	1 cut(s)	1012
PspN4I	GGNNCC	4 cut(s)	6, 646, 664, 727
PspPI	GGNCC	1 cut(s)	538
PsuI	RGATCY	4 cut(s)	170, 414, 621, 972
PsyI	GACNNNGTC	1 cut(s)	922
RsaI	GTAC	1 cut(s)	846
RsaNI	GTAC	1 cut(s)	845
SacII	CCGCGG	1 cut(s)	583
SaqAI	TTAA	4 cut(s)	372, 714, 741, 903
Sau3AI	GATC	5 cut(s)	170, 325, 414, 621, 972
Sau96I	GGNCC	1 cut(s)	538
SchI	GAGTC	3 cut(s)	350, 535, 944
ScrFI	CCNGG	5 cut(s)	457, 649, 650, 704, 760
Sfr303I	CCGCGG	1 cut(s)	583
SfuI	TTCGAA	1 cut(s)	279
SgrBI	CCGCGG	1 cut(s)	583
SinI	GGWCC	1 cut(s)	538
SmaI	CCCGGG	1 cut(s)	650
Sse9I	AATT	2 cut(s)	514, 530
SspI	AATATT	1 cut(s)	250
SspMI	CTAG	2 cut(s)	384, 752
StyD4I	CCNGG	5 cut(s)	455, 647, 648, 702, 758
StyI	CCWWGG	1 cut(s)	690
TaaI	ACNGT	3 cut(s)	550, 877, 924
TaiI	ACGT	1 cut(s)	820
TaqII	GACCGA	1 cut(s)	509
TasI	AATT	2 cut(s)	514, 530
TauI	GCSGC	6 cut(s)	585, 617, 689, 710, 797, 941
TfiI	GAWTC	1 cut(s)	502
Tru1I	TTAA	4 cut(s)	372, 714, 741, 903
Tru9I	TTAA	4 cut(s)	372, 714, 741, 903
TscAI	CASTG	1 cut(s)	985
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	4 cut(s)	23, 87, 674, 778
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	2 cut(s)	25, 237
TspMI	CCCGGG	1 cut(s)	648
TspRI	CASTG	1 cut(s)	985
Tth111I	GACNNNGTC	1 cut(s)	922
VpaK11BI	GGWCC	1 cut(s)	538
XapI	RAATTY	1 cut(s)	514
XbaI	TCTAGA	1 cut(s)	751
XmaI	CCCGGG	1 cut(s)	648
XmiI	GTMKAC	1 cut(s)	179
XmnI	GAANNNNTTC	1 cut(s)	501
XspI	CTAG	2 cut(s)	384, 752
ZraI	GACGTC	1 cut(s)	818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.