Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0011889

Physical Location & Seq

Genomic Coordinates Reverse (-)

21641469 .. 21643911

Gene Structure 2443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG222500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGAAGCTGCTCTCAGCTCAGACATGGATGTCCTTGATTACATCAAGAATCATCTTCTCGGAGAGTTCTCTCCGATGAGCAAAAGCTTTGCTCTTACTGAGCTAAGCGCCTCCTCCTCCTCCTCCTCCTCTTCCTCGTCCTCGGATCTATCTAGATCTCAGTCCAGTTCGTTGTCGACTTCTCAATCTTCCATTGAAATCTCTGATTACCTCGACAATGAACTCTTCGACTTCACCTCGAATAATCCAATCCCTAATGATTATTTCTTTGAGTTCGAAACCAAGCCACAAGTGATTGACCTCACAACCCCCAAACCAACTTATTTGTCCTCCCAAACTTCCTTTGAATTTGACTCCAAGCCTCAAGTTACCAACACTAGTTTCTTTGAATTCCAACCGGAGGTTCAGATCTTGAACCAAACAGCTCCCAAACCGGTCACTTCTGCCCGGAAACCGGCCCTCACCATCTCTCTCCCCAACAAGACCGAATGGATCCAGTTCTCGAAATCCGAGAAGCCTCCAGTGGTCCAGAAAACGGTTCAGAATGAGGAGAGGAAGAAGCACTACAGGGGGGTCCGACAACGGCCGTGGGGCAAGTACGCGGCGGAGATCCGAGACCCAAACCGGAGAGGCTCCCGGGTCTGGCTCGGGACCTTTGACACAGCCATCGAGGCAGCTAAGGCTTACGACCGGGCGGCGTTCAAGCTCCGAGGCTCCAAAGCCATCCTCAACTTTCCTCTCGAAGCGGGAAAATCTGACCCGCAGCCCAAACCAGCAGCCGTGGTTGAGAGAAAACGTCGTCGTGAGGTGGAAGTGAAACCGGAACCCGTGGTGGTGAAGAAGGAGAAAGTAACGGTGTCGGAGGAGGCTGTGAGTTATATTAAGGATATGCCGTTGACACCGTCGAGTTGGAAGGCGGCGTATTGGGACTCCGATTCGGATATGAAAGGGATCTTCAACGTTCCGCCGTTGTCGCCGTTATCTCCCCACCCGGCGATGGGTTTTTCACAACTTATGGTCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

341

Amino Acids

38.2

Weight (kDa)

7.77

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	188 - 239	3.2e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17490 AT5G47230
fragaria_vesca	FvH4_5g19800
malus_domestica	MD04G1058200.v1.1 MD06G1051900.v1.1
prunus_persica	Prupe.5G062000_v2.0.a1
pyrus_communis	pycom04g05190 pycom06g04360
rosa_chinensis	RchiOBHm_Chr7g0204611
rosa_laevigata	RLG00000003444
rosa_multiflora	Rmu_sc0003221.1_g000082 Rmu_sc0005129.1_g000017
rosa_roxburghii	Rroxscaffold_3G00252960
rosa_rugosa	Rorug07G0085200
rosa_samantha	Rh7AG214900 Rh7BG212200 Rh7CG227900 Rh7DG222500
rosa_wichuraiana	Rw7G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	29
AccI	GTMKAC	1 cut(s)	176
AccII	CGCG	1 cut(s)	602
AciI	CCGC	7 cut(s)	602, 605, 695, 746, 761, 917, 965
AclI	AACGTT	1 cut(s)	960
AclWI	GGATC	5 cut(s)	153, 487, 500, 604, 959
AcoI	YGGCCR	1 cut(s)	584
AcsI	RAATTY	2 cut(s)	347, 389
AfaI	GTAC	1 cut(s)	599
AfiI	CCNNNNNNNGG	6 cut(s)	400, 454, 535, 642, 997, 998
AgeI	ACCGGT	1 cut(s)	433
AgsI	TTSAA	6 cut(s)	197, 347, 389, 415, 703, 958
AhlI	ACTAGT	1 cut(s)	377
AjuI	GAANNNNNNNTTGG	4 cut(s)	365, 387, 397, 419
AluBI	AGCT	7 cut(s)	8, 18, 87, 103, 425, 677, 706
AluI	AGCT	7 cut(s)	8, 18, 87, 103, 425, 677, 706
Alw26I	GTCTC	1 cut(s)	609
AlwI	GGATC	5 cut(s)	153, 487, 500, 604, 959
Ama87I	CYCGRG	2 cut(s)	636, 647
AoxI	GGCC	2 cut(s)	456, 584
ApeKI	GCWGC	4 cut(s)	8, 674, 763, 776
ApoI	RAATTY	2 cut(s)	347, 389
AsiGI	ACCGGT	1 cut(s)	433
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	4 cut(s)	457, 526, 574, 651
AsuC2I	CCSGG	5 cut(s)	448, 637, 638, 692, 992
AsuHPI	GGTGA	3 cut(s)	226, 454, 847
AsuII	TTCGAA	1 cut(s)	276
AvaI	CYCGRG	2 cut(s)	636, 647
AvaII	GGWCC	3 cut(s)	526, 574, 651
BamHI	GGATCC	1 cut(s)	492
BarI	GAAGNNNNNNTAC	2 cut(s)	548, 580
BbvI	GCAGC	3 cut(s)	686, 775, 788
BccI	CCATC	4 cut(s)	473, 674, 731, 991
BceAI	ACGGC	6 cut(s)	571, 599, 764, 877, 952, 961
BcnI	CCSGG	5 cut(s)	448, 637, 638, 692, 992
BcoDI	GTCTC	1 cut(s)	609
BcuI	ACTAGT	1 cut(s)	377
BfaI	CTAG	2 cut(s)	153, 378
BfmI	CTRYAG	1 cut(s)	565
BfoI	RGCGCY	1 cut(s)	111
BglI	GCCNNNNNGGC	1 cut(s)	671
BglII	AGATCT	2 cut(s)	155, 408
BisI	GCNGC	7 cut(s)	9, 603, 675, 696, 764, 777, 918
BlpI	GCTNAGC	1 cut(s)	104
BlsI	GCNGC	7 cut(s)	10, 604, 676, 697, 765, 778, 919
Bme1390I	CCNGG	5 cut(s)	448, 637, 638, 692, 992
Bme18I	GGWCC	3 cut(s)	526, 574, 651
BmeT110I	CYCGRG	2 cut(s)	636, 647
BmgT120I	GGNCC	4 cut(s)	457, 526, 574, 651
BmiI	GGNNCC	6 cut(s)	494, 575, 634, 652, 715, 825
BmrFI	CCNGG	5 cut(s)	448, 637, 638, 692, 992
BpmI	CTGGAG	1 cut(s)	504
Bpu10I	CCTNAGC	1 cut(s)	678
Bpu1102I	GCTNAGC	1 cut(s)	104
Bpu14I	TTCGAA	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	348
BpuMI	CCSGG	5 cut(s)	448, 637, 638, 692, 992
BsaI	GGTCTC	1 cut(s)	609
BsaJI	CCNNGG	6 cut(s)	141, 587, 636, 709, 780, 828
BsaWI	WCCGGW	4 cut(s)	397, 433, 624, 820
Bsc4I	CCNNNNNNNGG	6 cut(s)	400, 454, 535, 642, 997, 998
Bse118I	RCCGGY	2 cut(s)	433, 454
Bse1I	ACTGG	3 cut(s)	165, 496, 521
BseDI	CCNNGG	6 cut(s)	141, 587, 636, 709, 780, 828
BseGI	GGATG	2 cut(s)	34, 723
BseLI	CCNNNNNNNGG	6 cut(s)	400, 454, 535, 642, 997, 998
BseMII	CTCAG	4 cut(s)	28, 33, 90, 173
BseNI	ACTGG	3 cut(s)	165, 496, 521
BseRI	GAGGAG	8 cut(s)	103, 106, 109, 112, 115, 118, 563, 878
BseX3I	CGGCCG	1 cut(s)	584
BseXI	GCAGC	3 cut(s)	686, 775, 788
Bsh1236I	CGCG	1 cut(s)	602
Bsh1285I	CGRYCG	2 cut(s)	587, 691
BshFI	GGCC	2 cut(s)	458, 586
BshTI	ACCGGT	1 cut(s)	433
BsiEI	CGRYCG	2 cut(s)	587, 691
BsiHKCI	CYCGRG	2 cut(s)	636, 647
BsiSI	CCGG	9 cut(s)	398, 434, 448, 455, 625, 637, 691, 821, 992
BslFI	GGGAC	2 cut(s)	664, 941
BslI	CCNNNNNNNGG	6 cut(s)	400, 454, 535, 642, 997, 998
BsmAI	GTCTC	1 cut(s)	609
BsmFI	GGGAC	2 cut(s)	664, 941
BsnI	GGCC	2 cut(s)	458, 586
Bso31I	GGTCTC	1 cut(s)	609
BsoBI	CYCGRG	2 cut(s)	636, 647
Bsp119I	TTCGAA	1 cut(s)	276
Bsp143I	GATC	6 cut(s)	145, 155, 408, 492, 609, 951
Bsp1720I	GCTNAGC	1 cut(s)	104
BspACI	CCGC	7 cut(s)	602, 605, 695, 746, 761, 917, 965
BspANI	GGCC	2 cut(s)	458, 586
BspCNI	CTCAG	4 cut(s)	27, 32, 91, 172
BspFNI	CGCG	1 cut(s)	602
BspLI	GGNNCC	6 cut(s)	494, 575, 634, 652, 715, 825
BspPI	GGATC	5 cut(s)	153, 487, 500, 604, 959
BspT104I	TTCGAA	1 cut(s)	276
BspTNI	GGTCTC	1 cut(s)	609
BsrFI	RCCGGY	2 cut(s)	433, 454
BsrI	ACTGG	3 cut(s)	165, 496, 521
BssAI	RCCGGY	2 cut(s)	433, 454
BssECI	CCNNGG	6 cut(s)	141, 587, 636, 709, 780, 828
BssMI	GATC	6 cut(s)	145, 155, 408, 492, 609, 951
Bst4CI	ACNGT	3 cut(s)	538, 856, 903
Bst6I	CTCTTC	2 cut(s)	136, 230
BstBI	TTCGAA	1 cut(s)	276
BstDEI	CTNAG	6 cut(s)	14, 19, 99, 104, 159, 678
BstDSI	CCRYGG	3 cut(s)	587, 780, 828
BstF5I	GGATG	2 cut(s)	34, 723
BstFNI	CGCG	1 cut(s)	602
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	6 cut(s)	148, 158, 411, 495, 612, 954
BstMAI	GTCTC	1 cut(s)	609
BstMBI	GATC	6 cut(s)	145, 155, 408, 492, 609, 951
BstMCI	CGRYCG	2 cut(s)	587, 691
BstMWI	GCNNNNNNNGC	3 cut(s)	671, 680, 973
BstSCI	CCNGG	5 cut(s)	446, 635, 636, 690, 990
BstSFI	CTRYAG	1 cut(s)	565
BstUI	CGCG	1 cut(s)	602
BstV1I	GCAGC	3 cut(s)	686, 775, 788
BstX2I	RGATCY	6 cut(s)	145, 155, 408, 492, 609, 951
BstYI	RGATCY	6 cut(s)	145, 155, 408, 492, 609, 951
BstZI	CGGCCG	1 cut(s)	584
BsuRI	GGCC	2 cut(s)	458, 586
BtgI	CCRYGG	3 cut(s)	587, 780, 828
BtgZI	GCGATG	1 cut(s)	1010
BtsCI	GGATG	2 cut(s)	34, 723
BtsIMutI	CAGTG	1 cut(s)	528
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	2 cut(s)	433, 454
Cfr13I	GGNCC	4 cut(s)	457, 526, 574, 651
Cfr9I	CCCGGG	1 cut(s)	636
Csp6I	GTAC	1 cut(s)	598
CspAI	ACCGGT	1 cut(s)	433
CspCI	CAANNNNNGTGG	2 cut(s)	569, 604
CviAII	CATG	1 cut(s)	25
CviQI	GTAC	1 cut(s)	598
DdeI	CTNAG	6 cut(s)	14, 19, 99, 104, 159, 678
DpnI	GATC	6 cut(s)	147, 157, 410, 494, 611, 953
DpnII	GATC	6 cut(s)	145, 155, 408, 492, 609, 951
DrdI	GACNNNNNNGTC	1 cut(s)	29
DseDI	GACNNNNNNGTC	1 cut(s)	29
EaeI	YGGCCR	1 cut(s)	584
EagI	CGGCCG	1 cut(s)	584
Eam1104I	CTCTTC	2 cut(s)	136, 230
EarI	CTCTTC	2 cut(s)	136, 230
EciI	GGCGGA	2 cut(s)	620, 954
EclXI	CGGCCG	1 cut(s)	584
Eco31I	GGTCTC	1 cut(s)	609
Eco47I	GGWCC	3 cut(s)	526, 574, 651
Eco52I	CGGCCG	1 cut(s)	584
Eco88I	CYCGRG	2 cut(s)	636, 647
EcoO109I	RGGNCCY	1 cut(s)	651
EcoRI	GAATTC	1 cut(s)	389
FaeI	CATG	1 cut(s)	28
FaiI	YATR	6 cut(s)	26, 879, 890, 944, 1016, 1024
FaqI	GGGAC	2 cut(s)	664, 941
FatI	CATG	1 cut(s)	24
FauI	CCCGC	2 cut(s)	739, 768
FblI	GTMKAC	1 cut(s)	176
Fnu4HI	GCNGC	7 cut(s)	9, 603, 675, 696, 764, 777, 918
FokI	GGATG	2 cut(s)	41, 710
Fsp4HI	GCNGC	7 cut(s)	9, 603, 675, 696, 764, 777, 918
FspBI	CTAG	2 cut(s)	153, 378
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	7 cut(s)	9, 603, 675, 696, 764, 777, 918
GsuI	CTGGAG	1 cut(s)	504
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	458, 586
HapII	CCGG	9 cut(s)	398, 434, 448, 455, 625, 637, 691, 821, 992
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	1 cut(s)	28
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HincII	GTYRAC	2 cut(s)	177, 897
HindII	GTYRAC	2 cut(s)	177, 897
HindIII	AAGCTT	1 cut(s)	85
HinfI	GANTC	4 cut(s)	49, 353, 929, 935
HpaII	CCGG	9 cut(s)	398, 434, 448, 455, 625, 637, 691, 821, 992
HphI	GGTGA	3 cut(s)	226, 454, 847
Hpy166II	GTNNAC	2 cut(s)	177, 897
Hpy188III	TCNNGA	8 cut(s)	46, 153, 412, 502, 529, 649, 740, 803
Hpy8I	GTNNAC	2 cut(s)	177, 897
Hpy99I	CGWCG	3 cut(s)	801, 804, 907
HpyAV	CCTTC	2 cut(s)	835, 907
HpyCH4III	ACNGT	3 cut(s)	538, 856, 903
HpyCH4IV	ACGT	2 cut(s)	796, 960
HpyF10VI	GCNNNNNNNGC	3 cut(s)	671, 680, 973
HpyF3I	CTNAG	6 cut(s)	14, 19, 99, 104, 159, 678
HpySE526I	ACGT	2 cut(s)	796, 960
Hsp92II	CATG	1 cut(s)	28
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	6 cut(s)	145, 155, 408, 492, 609, 951
LmnI	GCTCC	4 cut(s)	430, 638, 711, 719
Lsp1109I	GCAGC	3 cut(s)	686, 775, 788
MaeI	CTAG	2 cut(s)	153, 378
MaeII	ACGT	2 cut(s)	796, 960
MaeIII	GTNAC	3 cut(s)	367, 436, 850
MalI	GATC	6 cut(s)	147, 157, 410, 494, 611, 953
MboI	GATC	6 cut(s)	145, 155, 408, 492, 609, 951
MboII	GAAGA	7 cut(s)	47, 123, 180, 217, 568, 850, 946
MflI	RGATCY	6 cut(s)	145, 155, 408, 492, 609, 951
MluCI	AATT	2 cut(s)	347, 389
MlyI	GAGTC	2 cut(s)	347, 923
MmeI	TCCRAC	4 cut(s)	418, 601, 840, 890
MseI	TTAA	1 cut(s)	882
MspI	CCGG	9 cut(s)	398, 434, 448, 455, 625, 637, 691, 821, 992
MspR9I	CCNGG	5 cut(s)	448, 637, 638, 692, 992
MvnI	CGCG	1 cut(s)	602
MwoI	GCNNNNNNNGC	3 cut(s)	671, 680, 973
NciI	CCSGG	5 cut(s)	448, 637, 638, 692, 992
NdeII	GATC	6 cut(s)	145, 155, 408, 492, 609, 951
NlaIII	CATG	1 cut(s)	28
NlaIV	GGNNCC	6 cut(s)	494, 575, 634, 652, 715, 825
NmuCI	GTSAC	1 cut(s)	436
NspV	TTCGAA	1 cut(s)	276
PfeI	GAWTC	2 cut(s)	49, 935
PflFI	GACNNNGTC	1 cut(s)	901
PinAI	ACCGGT	1 cut(s)	433
PkrI	GCNGC	7 cut(s)	10, 604, 676, 697, 765, 778, 919
PleI	GAGTC	2 cut(s)	347, 923
PpsI	GAGTC	2 cut(s)	347, 923
PpuMI	RGGWCCY	1 cut(s)	651
Psp1406I	AACGTT	1 cut(s)	960
Psp5II	RGGWCCY	1 cut(s)	651
PspN4I	GGNNCC	6 cut(s)	494, 575, 634, 652, 715, 825
PspPI	GGNCC	4 cut(s)	457, 526, 574, 651
PspPPI	RGGWCCY	1 cut(s)	651
PsuI	RGATCY	6 cut(s)	145, 155, 408, 492, 609, 951
PsyI	GACNNNGTC	1 cut(s)	901
RsaI	GTAC	1 cut(s)	599
RsaNI	GTAC	1 cut(s)	598
SalI	GTCGAC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	882
SatI	GCNGC	7 cut(s)	9, 603, 675, 696, 764, 777, 918
Sau3AI	GATC	6 cut(s)	145, 155, 408, 492, 609, 951
Sau96I	GGNCC	4 cut(s)	457, 526, 574, 651
SchI	GAGTC	2 cut(s)	347, 923
ScrFI	CCNGG	5 cut(s)	448, 637, 638, 692, 992
SfcI	CTRYAG	1 cut(s)	565
SfuI	TTCGAA	1 cut(s)	276
SinI	GGWCC	3 cut(s)	526, 574, 651
SmaI	CCCGGG	1 cut(s)	638
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
SpeI	ACTAGT	1 cut(s)	377
Sse9I	AATT	2 cut(s)	347, 389
SsiI	CCGC	7 cut(s)	602, 605, 695, 746, 761, 917, 965
SspMI	CTAG	2 cut(s)	153, 378
StyD4I	CCNGG	5 cut(s)	446, 635, 636, 690, 990
TaaI	ACNGT	3 cut(s)	538, 856, 903
TaiI	ACGT	2 cut(s)	799, 963
TaqI	TCGA	9 cut(s)	176, 213, 228, 239, 276, 503, 669, 741, 905
TaqII	GACCGA	1 cut(s)	500
TasI	AATT	2 cut(s)	347, 389
TauI	GCSGC	3 cut(s)	605, 698, 920
TfiI	GAWTC	2 cut(s)	49, 935
Tru1I	TTAA	1 cut(s)	882
Tru9I	TTAA	1 cut(s)	882
TscAI	CASTG	1 cut(s)	528
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	4 cut(s)	8, 674, 763, 776
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	2 cut(s)	234, 959
TspMI	CCCGGG	1 cut(s)	636
TspRI	CASTG	1 cut(s)	528
Tth111I	GACNNNGTC	1 cut(s)	901
VpaK11BI	GGWCC	3 cut(s)	526, 574, 651
XapI	RAATTY	2 cut(s)	347, 389
XbaI	TCTAGA	1 cut(s)	152
XmaI	CCCGGG	1 cut(s)	636
XmiI	GTMKAC	1 cut(s)	176
XspI	CTAG	2 cut(s)	153, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.