Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0011889

Physical Location & Seq

Genomic Coordinates Reverse (-)

21231896 .. 21235247

Gene Structure 3352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG227900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGAAACTGCTCTCAGCTCAGACATGGTTGTCCTTGATTACATCAAGAATCATCTTCTCGGAGAGTTCTCTCCGATGAGCAAAAGCTTTGCTCTTACTGAGCTAAGCGCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCGTCCTCGGATCTATCTAGATCTCAGTCCAGTTCGTTGTCGACTTCTCAATCTTCCATTGAAATCTCTGATTACCTCGACAATGAACTCTTCGACTTCACCTCGAATAATCCAATCCCTAATGATTATTTCTTTGAGTTCGAAACCAAGCCACAAGTGATTGACCTCACAACCCCCAAACCAACTGATTTGTCCTCCCAAACTACCTTTGAATTTGATTCCAAGCCTCAAGTTGCCAACACTAGTTTCTTTGAATTCCAACCGGAGGTTCAGATCTTGAACCAAACAGCTCCCAAACCGGTCACTTCTGCCCGGAAACCGGCCCTCACCATCTCTCTCCCCAACAAGACCGAATGGATCCAGTTCTCGAAATCCGAGAAGCCTCCAGTGGTCCAGAAAACGGTTCAGAATGAGGAGAGGAAGAGGCACTACAGGGGGGTCCGACAACGGCCGTGGGGCAAGTACGCGGCAGAGATCCGAGACCCAAACCGGAGAGGCTCCCGGGTCTGGCTCGGGACCTTTGACACAGCCATCGAGGCCGCTAAGGCTTACGACCGGGCGGCGTTCAAGCTCCGAGGCTCCAAAGCCATCCTCAATTTTCCTCTCGAAGCGGGAAAATCCGACCTGCAGCCCAAACCAGCAGCCGTGGTTGTGAGAAAACGTCGTCGTGAGGTGGAAGTGAAACCGGAACCCGTGGTGGTGAAGAAGGAGAAAGTAACGGTGTCGGAGGAGGCTGTGAGTTATATTAAGGATATGCCGTTGACACCGTCGAGTTGGACGGCGGCGTATTGGGACTCCGATACGGATATGAAAGGGATCTTCAACGTTCCGCCGTTGTCGCCGTTATCTCCCCACCCGGCGATGGGTTTTTCACAACTTATGGTCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

342

Amino Acids

38.23

Weight (kDa)

7.79

Isoelectric Point (pI)

58.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	189 - 240	4.7e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17490 AT5G47230
fragaria_vesca	FvH4_5g19800
malus_domestica	MD04G1058200.v1.1 MD06G1051900.v1.1
prunus_persica	Prupe.5G062000_v2.0.a1
pyrus_communis	pycom04g05190 pycom06g04360
rosa_chinensis	RchiOBHm_Chr7g0204611
rosa_laevigata	RLG00000003444
rosa_multiflora	Rmu_sc0003221.1_g000082 Rmu_sc0005129.1_g000017
rosa_roxburghii	Rroxscaffold_3G00252960
rosa_rugosa	Rorug07G0085200
rosa_samantha	Rh7AG214900 Rh7BG212200 Rh7CG227900 Rh7DG222500
rosa_wichuraiana	Rw7G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	29
Acc36I	ACCTGC	1 cut(s)	771
AccI	GTMKAC	1 cut(s)	179
AccII	CGCG	1 cut(s)	605
AciI	CCGC	6 cut(s)	605, 678, 698, 749, 920, 968
AclI	AACGTT	1 cut(s)	963
AclWI	GGATC	5 cut(s)	156, 490, 503, 607, 962
AcoI	YGGCCR	1 cut(s)	587
AcsI	RAATTY	2 cut(s)	350, 392
AfaI	GTAC	1 cut(s)	602
AfiI	CCNNNNNNNGG	6 cut(s)	403, 457, 538, 645, 1000, 1001
AgeI	ACCGGT	1 cut(s)	436
AgsI	TTSAA	6 cut(s)	200, 350, 392, 418, 706, 961
AhlI	ACTAGT	1 cut(s)	380
AjuI	GAANNNNNNNTTGG	4 cut(s)	368, 390, 400, 422
AluBI	AGCT	5 cut(s)	18, 87, 103, 428, 709
AluI	AGCT	5 cut(s)	18, 87, 103, 428, 709
Alw26I	GTCTC	1 cut(s)	612
AlwI	GGATC	5 cut(s)	156, 490, 503, 607, 962
Ama87I	CYCGRG	2 cut(s)	639, 650
AoxI	GGCC	3 cut(s)	459, 587, 675
ApeKI	GCWGC	2 cut(s)	766, 779
ApoI	RAATTY	2 cut(s)	350, 392
AsiGI	ACCGGT	1 cut(s)	436
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	4 cut(s)	460, 529, 577, 654
AsuC2I	CCSGG	5 cut(s)	451, 640, 641, 695, 995
AsuHPI	GGTGA	3 cut(s)	229, 457, 850
AsuII	TTCGAA	1 cut(s)	279
AvaI	CYCGRG	2 cut(s)	639, 650
AvaII	GGWCC	3 cut(s)	529, 577, 654
BamHI	GGATCC	1 cut(s)	495
BarI	GAAGNNNNNNTAC	2 cut(s)	551, 583
BbvI	GCAGC	2 cut(s)	778, 791
BccI	CCATC	4 cut(s)	476, 677, 734, 994
BceAI	ACGGC	7 cut(s)	574, 602, 767, 880, 933, 955, 964
BcnI	CCSGG	5 cut(s)	451, 640, 641, 695, 995
BcoDI	GTCTC	1 cut(s)	612
BcuI	ACTAGT	1 cut(s)	380
BfaI	CTAG	2 cut(s)	156, 381
BfmI	CTRYAG	2 cut(s)	568, 764
BfoI	RGCGCY	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	771
BglI	GCCNNNNNGGC	2 cut(s)	674, 683
BglII	AGATCT	2 cut(s)	158, 411
BisI	GCNGC	6 cut(s)	606, 678, 699, 767, 780, 921
BlpI	GCTNAGC	1 cut(s)	104
BlsI	GCNGC	6 cut(s)	607, 679, 700, 768, 781, 922
Bme1390I	CCNGG	5 cut(s)	451, 640, 641, 695, 995
Bme18I	GGWCC	3 cut(s)	529, 577, 654
BmeT110I	CYCGRG	2 cut(s)	639, 650
BmgT120I	GGNCC	4 cut(s)	460, 529, 577, 654
BmiI	GGNNCC	6 cut(s)	497, 578, 637, 655, 718, 828
BmrFI	CCNGG	5 cut(s)	451, 640, 641, 695, 995
BpmI	CTGGAG	1 cut(s)	507
Bpu10I	CCTNAGC	1 cut(s)	681
Bpu1102I	GCTNAGC	1 cut(s)	104
Bpu14I	TTCGAA	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	351
BpuMI	CCSGG	5 cut(s)	451, 640, 641, 695, 995
BsaI	GGTCTC	1 cut(s)	612
BsaJI	CCNNGG	6 cut(s)	144, 590, 639, 712, 783, 831
BsaWI	WCCGGW	4 cut(s)	400, 436, 627, 823
Bsc4I	CCNNNNNNNGG	6 cut(s)	403, 457, 538, 645, 1000, 1001
Bse118I	RCCGGY	2 cut(s)	436, 457
Bse1I	ACTGG	3 cut(s)	168, 499, 524
BseDI	CCNNGG	6 cut(s)	144, 590, 639, 712, 783, 831
BseGI	GGATG	1 cut(s)	726
BseLI	CCNNNNNNNGG	6 cut(s)	403, 457, 538, 645, 1000, 1001
BseMII	CTCAG	4 cut(s)	28, 33, 90, 176
BseNI	ACTGG	3 cut(s)	168, 499, 524
BseRI	GAGGAG	9 cut(s)	103, 106, 109, 112, 115, 118, 121, 566, 881
BseX3I	CGGCCG	1 cut(s)	587
BseXI	GCAGC	2 cut(s)	778, 791
Bsh1236I	CGCG	1 cut(s)	605
Bsh1285I	CGRYCG	2 cut(s)	590, 694
BshFI	GGCC	3 cut(s)	461, 589, 677
BshTI	ACCGGT	1 cut(s)	436
BsiEI	CGRYCG	2 cut(s)	590, 694
BsiHKCI	CYCGRG	2 cut(s)	639, 650
BsiSI	CCGG	9 cut(s)	401, 437, 451, 458, 628, 640, 694, 824, 995
BslFI	GGGAC	2 cut(s)	667, 944
BslI	CCNNNNNNNGG	6 cut(s)	403, 457, 538, 645, 1000, 1001
BsmAI	GTCTC	1 cut(s)	612
BsmFI	GGGAC	2 cut(s)	667, 944
BsnI	GGCC	3 cut(s)	461, 589, 677
Bso31I	GGTCTC	1 cut(s)	612
BsoBI	CYCGRG	2 cut(s)	639, 650
Bsp119I	TTCGAA	1 cut(s)	279
Bsp143I	GATC	6 cut(s)	148, 158, 411, 495, 612, 954
Bsp1720I	GCTNAGC	1 cut(s)	104
BspACI	CCGC	6 cut(s)	605, 678, 698, 749, 920, 968
BspANI	GGCC	3 cut(s)	461, 589, 677
BspCNI	CTCAG	4 cut(s)	27, 32, 91, 175
BspFNI	CGCG	1 cut(s)	605
BspLI	GGNNCC	6 cut(s)	497, 578, 637, 655, 718, 828
BspMAI	CTGCAG	1 cut(s)	768
BspMI	ACCTGC	1 cut(s)	771
BspPI	GGATC	5 cut(s)	156, 490, 503, 607, 962
BspT104I	TTCGAA	1 cut(s)	279
BspTNI	GGTCTC	1 cut(s)	612
BsrFI	RCCGGY	2 cut(s)	436, 457
BsrI	ACTGG	3 cut(s)	168, 499, 524
BssAI	RCCGGY	2 cut(s)	436, 457
BssECI	CCNNGG	6 cut(s)	144, 590, 639, 712, 783, 831
BssMI	GATC	6 cut(s)	148, 158, 411, 495, 612, 954
Bst4CI	ACNGT	3 cut(s)	541, 859, 906
Bst6I	CTCTTC	3 cut(s)	139, 233, 554
BstBI	TTCGAA	1 cut(s)	279
BstDEI	CTNAG	6 cut(s)	14, 19, 99, 104, 162, 681
BstDSI	CCRYGG	3 cut(s)	590, 783, 831
BstF5I	GGATG	1 cut(s)	726
BstFNI	CGCG	1 cut(s)	605
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	6 cut(s)	151, 161, 414, 498, 615, 957
BstMAI	GTCTC	1 cut(s)	612
BstMBI	GATC	6 cut(s)	148, 158, 411, 495, 612, 954
BstMCI	CGRYCG	2 cut(s)	590, 694
BstMWI	GCNNNNNNNGC	3 cut(s)	674, 683, 976
BstSCI	CCNGG	5 cut(s)	449, 638, 639, 693, 993
BstSFI	CTRYAG	2 cut(s)	568, 764
BstUI	CGCG	1 cut(s)	605
BstV1I	GCAGC	2 cut(s)	778, 791
BstX2I	RGATCY	6 cut(s)	148, 158, 411, 495, 612, 954
BstYI	RGATCY	6 cut(s)	148, 158, 411, 495, 612, 954
BstZI	CGGCCG	1 cut(s)	587
BsuRI	GGCC	3 cut(s)	461, 589, 677
BtgI	CCRYGG	3 cut(s)	590, 783, 831
BtgZI	GCGATG	1 cut(s)	1013
BtsCI	GGATG	1 cut(s)	726
BtsIMutI	CAGTG	1 cut(s)	531
BveI	ACCTGC	1 cut(s)	771
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	2 cut(s)	436, 457
Cfr13I	GGNCC	4 cut(s)	460, 529, 577, 654
Cfr9I	CCCGGG	1 cut(s)	639
Csp6I	GTAC	1 cut(s)	601
CspAI	ACCGGT	1 cut(s)	436
CspCI	CAANNNNNGTGG	2 cut(s)	572, 607
CviAII	CATG	1 cut(s)	25
CviQI	GTAC	1 cut(s)	601
DdeI	CTNAG	6 cut(s)	14, 19, 99, 104, 162, 681
DpnI	GATC	6 cut(s)	150, 160, 413, 497, 614, 956
DpnII	GATC	6 cut(s)	148, 158, 411, 495, 612, 954
DrdI	GACNNNNNNGTC	1 cut(s)	29
DseDI	GACNNNNNNGTC	1 cut(s)	29
EaeI	YGGCCR	1 cut(s)	587
EagI	CGGCCG	1 cut(s)	587
Eam1104I	CTCTTC	3 cut(s)	139, 233, 554
EarI	CTCTTC	3 cut(s)	139, 233, 554
EciI	GGCGGA	1 cut(s)	957
EclXI	CGGCCG	1 cut(s)	587
Eco31I	GGTCTC	1 cut(s)	612
Eco47I	GGWCC	3 cut(s)	529, 577, 654
Eco52I	CGGCCG	1 cut(s)	587
Eco88I	CYCGRG	2 cut(s)	639, 650
EcoO109I	RGGNCCY	1 cut(s)	654
EcoRI	GAATTC	1 cut(s)	392
FaeI	CATG	1 cut(s)	28
FaiI	YATR	6 cut(s)	26, 882, 893, 947, 1019, 1027
FaqI	GGGAC	2 cut(s)	667, 944
FatI	CATG	1 cut(s)	24
FauI	CCCGC	1 cut(s)	742
FblI	GTMKAC	1 cut(s)	179
Fnu4HI	GCNGC	6 cut(s)	606, 678, 699, 767, 780, 921
FokI	GGATG	1 cut(s)	713
Fsp4HI	GCNGC	6 cut(s)	606, 678, 699, 767, 780, 921
FspBI	CTAG	2 cut(s)	156, 381
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	6 cut(s)	606, 678, 699, 767, 780, 921
GsuI	CTGGAG	1 cut(s)	507
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	461, 589, 677
HapII	CCGG	9 cut(s)	401, 437, 451, 458, 628, 640, 694, 824, 995
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	1 cut(s)	28
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HincII	GTYRAC	2 cut(s)	180, 900
HindII	GTYRAC	2 cut(s)	180, 900
HindIII	AAGCTT	1 cut(s)	85
HinfI	GANTC	3 cut(s)	49, 356, 932
HpaII	CCGG	9 cut(s)	401, 437, 451, 458, 628, 640, 694, 824, 995
HphI	GGTGA	3 cut(s)	229, 457, 850
Hpy166II	GTNNAC	2 cut(s)	180, 900
Hpy188III	TCNNGA	8 cut(s)	46, 156, 415, 505, 532, 652, 743, 806
Hpy8I	GTNNAC	2 cut(s)	180, 900
Hpy99I	CGWCG	3 cut(s)	804, 807, 910
HpyAV	CCTTC	1 cut(s)	838
HpyCH4III	ACNGT	3 cut(s)	541, 859, 906
HpyCH4IV	ACGT	2 cut(s)	799, 963
HpyCH4V	TGCA	1 cut(s)	766
HpyF10VI	GCNNNNNNNGC	3 cut(s)	674, 683, 976
HpyF3I	CTNAG	6 cut(s)	14, 19, 99, 104, 162, 681
HpySE526I	ACGT	2 cut(s)	799, 963
Hsp92II	CATG	1 cut(s)	28
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	6 cut(s)	148, 158, 411, 495, 612, 954
LmnI	GCTCC	4 cut(s)	433, 641, 714, 722
Lsp1109I	GCAGC	2 cut(s)	778, 791
MaeI	CTAG	2 cut(s)	156, 381
MaeII	ACGT	2 cut(s)	799, 963
MaeIII	GTNAC	2 cut(s)	439, 853
MalI	GATC	6 cut(s)	150, 160, 413, 497, 614, 956
MboI	GATC	6 cut(s)	148, 158, 411, 495, 612, 954
MboII	GAAGA	7 cut(s)	47, 126, 183, 220, 571, 853, 949
MflI	RGATCY	6 cut(s)	148, 158, 411, 495, 612, 954
MluCI	AATT	3 cut(s)	350, 392, 733
MlyI	GAGTC	1 cut(s)	926
MmeI	TCCRAC	5 cut(s)	421, 604, 783, 843, 893
MseI	TTAA	1 cut(s)	885
MspI	CCGG	9 cut(s)	401, 437, 451, 458, 628, 640, 694, 824, 995
MspR9I	CCNGG	5 cut(s)	451, 640, 641, 695, 995
MvnI	CGCG	1 cut(s)	605
MwoI	GCNNNNNNNGC	3 cut(s)	674, 683, 976
NciI	CCSGG	5 cut(s)	451, 640, 641, 695, 995
NdeII	GATC	6 cut(s)	148, 158, 411, 495, 612, 954
NlaIII	CATG	1 cut(s)	28
NlaIV	GGNNCC	6 cut(s)	497, 578, 637, 655, 718, 828
NmuCI	GTSAC	1 cut(s)	439
NspV	TTCGAA	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	49, 356
PflFI	GACNNNGTC	1 cut(s)	904
PinAI	ACCGGT	1 cut(s)	436
PkrI	GCNGC	6 cut(s)	607, 679, 700, 768, 781, 922
PleI	GAGTC	1 cut(s)	926
PpsI	GAGTC	1 cut(s)	926
PpuMI	RGGWCCY	1 cut(s)	654
Psp1406I	AACGTT	1 cut(s)	963
Psp5II	RGGWCCY	1 cut(s)	654
PspN4I	GGNNCC	6 cut(s)	497, 578, 637, 655, 718, 828
PspPI	GGNCC	4 cut(s)	460, 529, 577, 654
PspPPI	RGGWCCY	1 cut(s)	654
PstI	CTGCAG	1 cut(s)	768
PsuI	RGATCY	6 cut(s)	148, 158, 411, 495, 612, 954
PsyI	GACNNNGTC	1 cut(s)	904
RsaI	GTAC	1 cut(s)	602
RsaNI	GTAC	1 cut(s)	601
SalI	GTCGAC	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	885
SatI	GCNGC	6 cut(s)	606, 678, 699, 767, 780, 921
Sau3AI	GATC	6 cut(s)	148, 158, 411, 495, 612, 954
Sau96I	GGNCC	4 cut(s)	460, 529, 577, 654
SchI	GAGTC	1 cut(s)	926
ScrFI	CCNGG	5 cut(s)	451, 640, 641, 695, 995
SfcI	CTRYAG	2 cut(s)	568, 764
SfuI	TTCGAA	1 cut(s)	279
SinI	GGWCC	3 cut(s)	529, 577, 654
SmaI	CCCGGG	1 cut(s)	641
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
SpeI	ACTAGT	1 cut(s)	380
Sse9I	AATT	3 cut(s)	350, 392, 733
SsiI	CCGC	6 cut(s)	605, 678, 698, 749, 920, 968
SspMI	CTAG	2 cut(s)	156, 381
StyD4I	CCNGG	5 cut(s)	449, 638, 639, 693, 993
TaaI	ACNGT	3 cut(s)	541, 859, 906
TaiI	ACGT	2 cut(s)	802, 966
TaqI	TCGA	9 cut(s)	179, 216, 231, 242, 279, 506, 672, 744, 908
TaqII	GACCGA	1 cut(s)	503
TasI	AATT	3 cut(s)	350, 392, 733
TauI	GCSGC	4 cut(s)	608, 680, 701, 923
TfiI	GAWTC	2 cut(s)	49, 356
Tru1I	TTAA	1 cut(s)	885
Tru9I	TTAA	1 cut(s)	885
TscAI	CASTG	1 cut(s)	531
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	2 cut(s)	766, 779
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	2 cut(s)	237, 962
TspGWI	ACGGA	1 cut(s)	956
TspMI	CCCGGG	1 cut(s)	639
TspRI	CASTG	1 cut(s)	531
Tth111I	GACNNNGTC	1 cut(s)	904
VpaK11BI	GGWCC	3 cut(s)	529, 577, 654
XapI	RAATTY	2 cut(s)	350, 392
XbaI	TCTAGA	1 cut(s)	155
XmaI	CCCGGG	1 cut(s)	639
XmiI	GTMKAC	1 cut(s)	179
XspI	CTAG	2 cut(s)	156, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.