Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011889

Physical Location & Seq

Genomic Coordinates Forward (+)

47022103 .. 47022912

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00252960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGAAACTGCTCTCAGCTCAGACATGGCTGCCCTGGATTACATCAAGAATCATCTTCTCGGAGAGTTCTCTCCGATGAGCAAAAGCTTTGCTCTTACTGAGCTAAGCGCCTCCTCCTCCTCCACTTCCTCGTCCTCGGATCTATCTAGATCTCAGTCCAGTTCGTTGTCGACCTCTCAATCTTCCATTGAAATCTCTGATTACCTCGACAATGAACTCTTCGACTTCACCTCGAATAATCCAATCCCTAATGATTATTTCTTTGAGTTCGAAACCAAGCCACAAGTGATTGACCTCACAACCCCCAAACCAACTGATTTGTCCTCCCTAACTTCCTTTGAATTTGACTCCAAGCCTCAAGTTACCAACACTAGTTTCTTTGAATTCCAACCGGAGGTTCAGATCTTGAACCAAACAGCTCCCAAACCGGTCACTTCTGCCCGGAAACCGGCCCTCACCATCTCTCTCCCGAACAAGACCGAATGGATCCAGTTCTCGAAATCCGAGAAGCCTCAAGTGGTCCAGAAAACGGTTCAGAAGGAGGAGAGGAAGAAGCACTACAGGGGGTCCGACAACGGCCGTGGGGCAAGTACGCGGCGGAGATCCGAGACCCCAACCGGAGAGGCTCCCGGGTCTGGCTCGGTACCTTTGACACAGCCATCGACGCCGCTAAGGCTTACGATAGGGCGGCGTTCAAGCTCCGTGGCTCCAAAGCCATCCTCAACTTTCCTCTCGAAGCGGGGAAATCCGATCCGCAGCCCAAACCAGCAGCCGTGGTTGAGAGAAAACGACGTCGTGAGGTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

269

Amino Acids

29.86

Weight (kDa)

9.02

Isoelectric Point (pI)

61.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17490 AT5G47230
fragaria_vesca	FvH4_5g19800
malus_domestica	MD04G1058200.v1.1 MD06G1051900.v1.1
prunus_persica	Prupe.5G062000_v2.0.a1
pyrus_communis	pycom04g05190 pycom06g04360
rosa_chinensis	RchiOBHm_Chr7g0204611
rosa_laevigata	RLG00000003444
rosa_multiflora	Rmu_sc0003221.1_g000082 Rmu_sc0005129.1_g000017
rosa_roxburghii	Rroxscaffold_3G00252960
rosa_rugosa	Rorug07G0085200
rosa_samantha	Rh7AG214900 Rh7BG212200 Rh7CG227900 Rh7DG222500
rosa_wichuraiana	Rw7G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	795
Acc65I	GGTACC	1 cut(s)	643
AccB1I	GGYRCC	1 cut(s)	643
AccI	GTMKAC	1 cut(s)	170
AccII	CGCG	1 cut(s)	595
AciI	CCGC	6 cut(s)	595, 598, 668, 688, 739, 754
AclWI	GGATC	5 cut(s)	147, 481, 494, 597, 745
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	2 cut(s)	341, 383
AcyI	GRCGYC	2 cut(s)	665, 792
AfaI	GTAC	2 cut(s)	592, 645
AfiI	CCNNNNNNNGG	4 cut(s)	394, 448, 529, 635
AgeI	ACCGGT	1 cut(s)	427
AgsI	TTSAA	5 cut(s)	191, 341, 383, 409, 696
AhlI	ACTAGT	1 cut(s)	371
AjnI	CCWGG	1 cut(s)	33
AjuI	GAANNNNNNNTTGG	4 cut(s)	359, 381, 391, 413
AluBI	AGCT	5 cut(s)	18, 87, 103, 419, 699
AluI	AGCT	5 cut(s)	18, 87, 103, 419, 699
Alw26I	GTCTC	1 cut(s)	602
AlwI	GGATC	5 cut(s)	147, 481, 494, 597, 745
Ama87I	CYCGRG	1 cut(s)	629
AoxI	GGCC	2 cut(s)	450, 577
ApeKI	GCWGC	3 cut(s)	29, 756, 769
ApoI	RAATTY	2 cut(s)	341, 383
AsiGI	ACCGGT	1 cut(s)	427
Asp718I	GGTACC	1 cut(s)	643
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	3 cut(s)	451, 520, 567
AsuC2I	CCSGG	3 cut(s)	442, 630, 631
AsuHPI	GGTGA	2 cut(s)	220, 448
AsuII	TTCGAA	1 cut(s)	270
AvaI	CYCGRG	1 cut(s)	629
AvaII	GGWCC	2 cut(s)	520, 567
BamHI	GGATCC	1 cut(s)	486
BanI	GGYRCC	1 cut(s)	643
BarI	GAAGNNNNNNTAC	2 cut(s)	542, 574
BbvI	GCAGC	3 cut(s)	16, 768, 781
BccI	CCATC	3 cut(s)	467, 667, 724
BceAI	ACGGC	3 cut(s)	564, 592, 757
BciT130I	CCWGG	1 cut(s)	35
BcnI	CCSGG	3 cut(s)	442, 630, 631
BcoDI	GTCTC	1 cut(s)	602
BcuI	ACTAGT	1 cut(s)	371
BfaI	CTAG	2 cut(s)	147, 372
BfmI	CTRYAG	1 cut(s)	559
BfoI	RGCGCY	1 cut(s)	111
BglI	GCCNNNNNGGC	1 cut(s)	673
BglII	AGATCT	2 cut(s)	149, 402
BisI	GCNGC	6 cut(s)	30, 596, 668, 689, 757, 770
BlpI	GCTNAGC	1 cut(s)	104
BlsI	GCNGC	6 cut(s)	31, 597, 669, 690, 758, 771
Bme1390I	CCNGG	4 cut(s)	35, 442, 630, 631
Bme18I	GGWCC	2 cut(s)	520, 567
BmeT110I	CYCGRG	1 cut(s)	629
BmgT120I	GGNCC	3 cut(s)	451, 520, 567
BmiI	GGNNCC	5 cut(s)	488, 568, 627, 645, 708
BmrFI	CCNGG	4 cut(s)	35, 442, 630, 631
Bpu10I	CCTNAGC	1 cut(s)	671
Bpu1102I	GCTNAGC	1 cut(s)	104
Bpu14I	TTCGAA	1 cut(s)	270
BpuEI	CTTGAG	2 cut(s)	342, 498
BpuMI	CCSGG	3 cut(s)	442, 630, 631
BsaHI	GRCGYC	2 cut(s)	665, 792
BsaI	GGTCTC	1 cut(s)	602
BsaJI	CCNNGG	6 cut(s)	33, 135, 580, 629, 702, 773
BsaWI	WCCGGW	3 cut(s)	391, 427, 617
Bsc4I	CCNNNNNNNGG	4 cut(s)	394, 448, 529, 635
Bse118I	RCCGGY	2 cut(s)	427, 448
Bse1I	ACTGG	2 cut(s)	159, 490
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	6 cut(s)	33, 135, 580, 629, 702, 773
BseGI	GGATG	1 cut(s)	716
BseLI	CCNNNNNNNGG	4 cut(s)	394, 448, 529, 635
BseMII	CTCAG	4 cut(s)	28, 33, 90, 167
BseNI	ACTGG	2 cut(s)	159, 490
BseRI	GAGGAG	4 cut(s)	103, 106, 109, 557
BseX3I	CGGCCG	1 cut(s)	577
BseXI	GCAGC	3 cut(s)	16, 768, 781
Bsh1236I	CGCG	1 cut(s)	595
Bsh1285I	CGRYCG	1 cut(s)	580
BshFI	GGCC	2 cut(s)	452, 579
BshNI	GGYRCC	1 cut(s)	643
BshTI	ACCGGT	1 cut(s)	427
BsiEI	CGRYCG	1 cut(s)	580
BsiHKCI	CYCGRG	1 cut(s)	629
BsiSI	CCGG	6 cut(s)	392, 428, 442, 449, 618, 630
BslI	CCNNNNNNNGG	4 cut(s)	394, 448, 529, 635
BsmAI	GTCTC	1 cut(s)	602
BsnI	GGCC	2 cut(s)	452, 579
Bso31I	GGTCTC	1 cut(s)	602
BsoBI	CYCGRG	1 cut(s)	629
Bsp119I	TTCGAA	1 cut(s)	270
Bsp143I	GATC	6 cut(s)	139, 149, 402, 486, 602, 750
Bsp1720I	GCTNAGC	1 cut(s)	104
BspACI	CCGC	6 cut(s)	595, 598, 668, 688, 739, 754
BspANI	GGCC	2 cut(s)	452, 579
BspCNI	CTCAG	4 cut(s)	27, 32, 91, 166
BspFNI	CGCG	1 cut(s)	595
BspLI	GGNNCC	5 cut(s)	488, 568, 627, 645, 708
BspPI	GGATC	5 cut(s)	147, 481, 494, 597, 745
BspT104I	TTCGAA	1 cut(s)	270
BspT107I	GGYRCC	1 cut(s)	643
BspTNI	GGTCTC	1 cut(s)	602
BsrFI	RCCGGY	2 cut(s)	427, 448
BsrI	ACTGG	2 cut(s)	159, 490
BssAI	RCCGGY	2 cut(s)	427, 448
BssECI	CCNNGG	6 cut(s)	33, 135, 580, 629, 702, 773
BssMI	GATC	6 cut(s)	139, 149, 402, 486, 602, 750
BssNI	GRCGYC	2 cut(s)	665, 792
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	532
Bst6I	CTCTTC	1 cut(s)	224
BstACI	GRCGYC	2 cut(s)	665, 792
BstBI	TTCGAA	1 cut(s)	270
BstDEI	CTNAG	6 cut(s)	14, 19, 99, 104, 153, 671
BstDSI	CCRYGG	3 cut(s)	580, 702, 773
BstF5I	GGATG	1 cut(s)	716
BstFNI	CGCG	1 cut(s)	595
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	6 cut(s)	142, 152, 405, 489, 605, 753
BstMAI	GTCTC	1 cut(s)	602
BstMBI	GATC	6 cut(s)	139, 149, 402, 486, 602, 750
BstMCI	CGRYCG	1 cut(s)	580
BstMWI	GCNNNNNNNGC	2 cut(s)	664, 673
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	4 cut(s)	33, 440, 628, 629
BstSFI	CTRYAG	1 cut(s)	559
BstUI	CGCG	1 cut(s)	595
BstV1I	GCAGC	3 cut(s)	16, 768, 781
BstX2I	RGATCY	5 cut(s)	139, 149, 402, 486, 602
BstYI	RGATCY	5 cut(s)	139, 149, 402, 486, 602
BstZI	CGGCCG	1 cut(s)	577
BsuRI	GGCC	2 cut(s)	452, 579
BtgI	CCRYGG	3 cut(s)	580, 702, 773
BtsCI	GGATG	1 cut(s)	716
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	2 cut(s)	427, 448
Cfr13I	GGNCC	3 cut(s)	451, 520, 567
Cfr9I	CCCGGG	1 cut(s)	629
CseI	GACGC	1 cut(s)	673
Csp6I	GTAC	2 cut(s)	591, 644
CspAI	ACCGGT	1 cut(s)	427
CspCI	CAANNNNNGTGG	4 cut(s)	562, 597, 684, 719
CviAII	CATG	1 cut(s)	25
CviQI	GTAC	2 cut(s)	591, 644
DdeI	CTNAG	6 cut(s)	14, 19, 99, 104, 153, 671
DpnI	GATC	6 cut(s)	141, 151, 404, 488, 604, 752
DpnII	GATC	6 cut(s)	139, 149, 402, 486, 602, 750
EaeI	YGGCCR	1 cut(s)	577
EagI	CGGCCG	1 cut(s)	577
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
EciI	GGCGGA	1 cut(s)	613
EclXI	CGGCCG	1 cut(s)	577
Eco31I	GGTCTC	1 cut(s)	602
Eco47I	GGWCC	2 cut(s)	520, 567
Eco52I	CGGCCG	1 cut(s)	577
Eco88I	CYCGRG	1 cut(s)	629
EcoRI	GAATTC	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	33
FaeI	CATG	1 cut(s)	28
FaiI	YATR	1 cut(s)	26
FatI	CATG	1 cut(s)	24
FauI	CCCGC	1 cut(s)	732
FblI	GTMKAC	1 cut(s)	170
Fnu4HI	GCNGC	6 cut(s)	30, 596, 668, 689, 757, 770
FokI	GGATG	1 cut(s)	703
Fsp4HI	GCNGC	6 cut(s)	30, 596, 668, 689, 757, 770
FspBI	CTAG	2 cut(s)	147, 372
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	6 cut(s)	30, 596, 668, 689, 757, 770
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	452, 579
HapII	CCGG	6 cut(s)	392, 428, 442, 449, 618, 630
HgaI	GACGC	1 cut(s)	673
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	2 cut(s)	665, 792
Hin1II	CATG	1 cut(s)	28
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HindIII	AAGCTT	1 cut(s)	85
HinfI	GANTC	2 cut(s)	49, 347
HpaII	CCGG	6 cut(s)	392, 428, 442, 449, 618, 630
HphI	GGTGA	2 cut(s)	220, 448
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188III	TCNNGA	8 cut(s)	46, 147, 406, 469, 496, 523, 733, 796
Hpy8I	GTNNAC	1 cut(s)	171
Hpy99I	CGWCG	3 cut(s)	667, 794, 797
HpyAV	CCTTC	1 cut(s)	532
HpyCH4III	ACNGT	1 cut(s)	532
HpyCH4IV	ACGT	1 cut(s)	792
HpyF10VI	GCNNNNNNNGC	2 cut(s)	664, 673
HpyF3I	CTNAG	6 cut(s)	14, 19, 99, 104, 153, 671
HpySE526I	ACGT	1 cut(s)	792
Hsp92I	GRCGYC	2 cut(s)	665, 792
Hsp92II	CATG	1 cut(s)	28
HspAI	GCGC	1 cut(s)	108
KpnI	GGTACC	1 cut(s)	647
Kzo9I	GATC	6 cut(s)	139, 149, 402, 486, 602, 750
LmnI	GCTCC	4 cut(s)	424, 631, 704, 712
Lsp1109I	GCAGC	3 cut(s)	16, 768, 781
MaeI	CTAG	2 cut(s)	147, 372
MaeII	ACGT	1 cut(s)	792
MaeIII	GTNAC	2 cut(s)	361, 430
MalI	GATC	6 cut(s)	141, 151, 404, 488, 604, 752
MboI	GATC	6 cut(s)	139, 149, 402, 486, 602, 750
MboII	GAAGA	4 cut(s)	47, 174, 211, 562
MflI	RGATCY	5 cut(s)	139, 149, 402, 486, 602
MluCI	AATT	2 cut(s)	341, 383
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	2 cut(s)	412, 594
MspI	CCGG	6 cut(s)	392, 428, 442, 449, 618, 630
MspR9I	CCNGG	4 cut(s)	35, 442, 630, 631
MvaI	CCWGG	1 cut(s)	35
MvnI	CGCG	1 cut(s)	595
MwoI	GCNNNNNNNGC	2 cut(s)	664, 673
NciI	CCSGG	3 cut(s)	442, 630, 631
NdeII	GATC	6 cut(s)	139, 149, 402, 486, 602, 750
NlaIII	CATG	1 cut(s)	28
NlaIV	GGNNCC	5 cut(s)	488, 568, 627, 645, 708
NmuCI	GTSAC	1 cut(s)	430
NspV	TTCGAA	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	49
PinAI	ACCGGT	1 cut(s)	427
PkrI	GCNGC	6 cut(s)	31, 597, 669, 690, 758, 771
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	5 cut(s)	488, 568, 627, 645, 708
PspPI	GGNCC	3 cut(s)	451, 520, 567
PsuI	RGATCY	5 cut(s)	139, 149, 402, 486, 602
RsaI	GTAC	2 cut(s)	592, 645
RsaNI	GTAC	2 cut(s)	591, 644
SalI	GTCGAC	1 cut(s)	169
SatI	GCNGC	6 cut(s)	30, 596, 668, 689, 757, 770
Sau3AI	GATC	6 cut(s)	139, 149, 402, 486, 602, 750
Sau96I	GGNCC	3 cut(s)	451, 520, 567
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	4 cut(s)	35, 442, 630, 631
SfcI	CTRYAG	1 cut(s)	559
SfuI	TTCGAA	1 cut(s)	270
SinI	GGWCC	2 cut(s)	520, 567
SmaI	CCCGGG	1 cut(s)	631
SmlI	CTYRAG	2 cut(s)	357, 513
SmoI	CTYRAG	2 cut(s)	357, 513
SpeI	ACTAGT	1 cut(s)	371
Sse9I	AATT	2 cut(s)	341, 383
SsiI	CCGC	6 cut(s)	595, 598, 668, 688, 739, 754
SspMI	CTAG	2 cut(s)	147, 372
StyD4I	CCNGG	4 cut(s)	33, 440, 628, 629
TaaI	ACNGT	1 cut(s)	532
TaiI	ACGT	1 cut(s)	795
TaqI	TCGA	8 cut(s)	170, 207, 222, 233, 270, 497, 662, 734
TaqII	GACCGA	1 cut(s)	494
TasI	AATT	2 cut(s)	341, 383
TauI	GCSGC	3 cut(s)	598, 670, 691
TfiI	GAWTC	1 cut(s)	49
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	3 cut(s)	29, 756, 769
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	1 cut(s)	228
TspGWI	ACGGA	1 cut(s)	691
TspMI	CCCGGG	1 cut(s)	629
VpaK11BI	GGWCC	2 cut(s)	520, 567
XapI	RAATTY	2 cut(s)	341, 383
XbaI	TCTAGA	1 cut(s)	146
XmaI	CCCGGG	1 cut(s)	629
XmiI	GTMKAC	1 cut(s)	170
XspI	CTAG	2 cut(s)	147, 372
ZraI	GACGTC	1 cut(s)	793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.