Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011889

Physical Location & Seq

Genomic Coordinates Forward (+)

19179881 .. 19181182

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCGACTCCTAACGAAGTATCTGCACTTTGGTTCATCGAGAAACATCTACTCGACGAGGCTTCTCCTGTGGCTACAGATCCATGGATGAAGCACGAATCATCATCAGCAACAGAATCTAGCTCTGACTCTTCTTCTATCATCTTCGGATCATCGTCCTCTTCTTTCGCCCCAATTGATTTCTCTGAATCCGTATGCAAACCTGAAATCATCGATCTCGATACTCCCAGATCTATGGAATTTCTATCGATTCCATTTGAATTTGACTCAGAAGTTTCTGTTTCTGATTTCGATTTTAAACCTTCTAATCAAAATCAAAATCAGTTTGAACCGGAGCTTAAATCTCAAATTCGTAAACCGCCATTGAAGATTTCGCTTCCAGCTAAAACAGAGTGGATTCAATTCGCAGCTGAAAACACCAAACCGGAAGTTACTAAACCGGTTTCGGAAGAAGAGAAGAAGCATTACAGAGGAGTAAGACAAAGACCGTGGGGGAAATTCGCGGCGGAGATTCGTGACCCGAATAAACGCGGATCTCGCGTTTGGCTTGGGACGTTTGATACAGCGATTGAAGCGGCTAGAGCTTATGACGAAGCAGCGTTTAGACTACGAGGATCGAAAGCGATTTTGAATTTCCCTCTTGAAGTTGGGAAGTGGAAACCACGCGCCGATGAAGGTGAGAAGAAACGGAAGAGAGACGATGATGAGAAAGTGACTGTGGTTGAGAAAGTGTTGAAGACGGAACAGAGCGTTGACGTTAACGGTGGAGAGACGTTTCCGTTTGTAACGTCGAATTTAACGGAATTATGTGACTGGGATTTAACGGGGTTTCTTAACTTTCCGCTTCTGTCGCCGTTATCTCCTCATCCACCGTTTGGTTATTCCCAGTTGACCGTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

300

Amino Acids

33.81

Weight (kDa)

5.06

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	155 - 205	1.6e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17490 AT5G47230
fragaria_vesca	FvH4_5g19800
malus_domestica	MD04G1058200.v1.1 MD06G1051900.v1.1
prunus_persica	Prupe.5G062000_v2.0.a1
pyrus_communis	pycom04g05190 pycom06g04360
rosa_chinensis	RchiOBHm_Chr7g0204611
rosa_laevigata	RLG00000003444
rosa_multiflora	Rmu_sc0003221.1_g000082 Rmu_sc0005129.1_g000017
rosa_roxburghii	Rroxscaffold_3G00252960
rosa_rugosa	Rorug07G0085200
rosa_samantha	Rh7AG214900 Rh7BG212200 Rh7CG227900 Rh7DG222500
rosa_wichuraiana	Rw7G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	875
AccII	CGCG	4 cut(s)	503, 531, 540, 666
AciI	CCGC	6 cut(s)	359, 503, 506, 531, 575, 842
AclWI	GGATC	4 cut(s)	74, 157, 541, 622
AcsI	RAATTY	6 cut(s)	239, 260, 348, 497, 631, 793
AfiI	CCNNNNNNNGG	1 cut(s)	875
AgeI	ACCGGT	1 cut(s)	439
AgsI	TTSAA	8 cut(s)	260, 329, 367, 401, 572, 631, 644, 736
AluBI	AGCT	5 cut(s)	123, 337, 383, 410, 584
AluI	AGCT	5 cut(s)	123, 337, 383, 410, 584
Alw26I	GTCTC	2 cut(s)	690, 764
AlwI	GGATC	4 cut(s)	74, 157, 541, 622
ApeKI	GCWGC	2 cut(s)	407, 596
ApoI	RAATTY	6 cut(s)	239, 260, 348, 497, 631, 793
AsiGI	ACCGGT	1 cut(s)	439
AspLEI	GCGC	1 cut(s)	668
AsuHPI	GGTGA	1 cut(s)	689
BarI	GAAGNNNNNNTAC	2 cut(s)	449, 481
BbsI	GAAGAC	1 cut(s)	743
BbvI	GCAGC	2 cut(s)	419, 608
BceAI	ACGGC	1 cut(s)	838
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BcoDI	GTCTC	2 cut(s)	690, 764
BfaI	CTAG	2 cut(s)	120, 579
BfmI	CTRYAG	1 cut(s)	75
BglII	AGATCT	1 cut(s)	230
BisI	GCNGC	4 cut(s)	408, 504, 576, 597
BlsI	GCNGC	4 cut(s)	409, 505, 577, 598
BmrI	ACTGGG	2 cut(s)	823, 880
BmuI	ACTGGG	2 cut(s)	823, 880
BpiI	GAAGAC	1 cut(s)	743
Bsa29I	ATCGAT	2 cut(s)	213, 248
BsaJI	CCNNGG	2 cut(s)	83, 488
BsaWI	WCCGGW	3 cut(s)	331, 424, 439
Bsc4I	CCNNNNNNNGG	1 cut(s)	875
Bse118I	RCCGGY	1 cut(s)	439
Bse1I	ACTGG	2 cut(s)	818, 886
BseCI	ATCGAT	2 cut(s)	213, 248
BseDI	CCNNGG	2 cut(s)	83, 488
BseGI	GGATG	2 cut(s)	93, 865
BseLI	CCNNNNNNNGG	1 cut(s)	875
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	818, 886
BseRI	GAGGAG	2 cut(s)	486, 852
BseXI	GCAGC	2 cut(s)	419, 608
BsgI	GTGCAG	1 cut(s)	9
Bsh1236I	CGCG	4 cut(s)	503, 531, 540, 666
BshTI	ACCGGT	1 cut(s)	439
BshVI	ATCGAT	2 cut(s)	213, 248
BsiSI	CCGG	3 cut(s)	332, 425, 440
BslFI	GGGAC	1 cut(s)	565
BslI	CCNNNNNNNGG	1 cut(s)	875
BsmAI	GTCTC	2 cut(s)	690, 764
BsmBI	CGTCTC	2 cut(s)	690, 764
BsmFI	GGGAC	1 cut(s)	565
Bsp143I	GATC	6 cut(s)	79, 149, 214, 230, 533, 614
Bsp19I	CCATGG	1 cut(s)	83
BspACI	CCGC	6 cut(s)	359, 503, 506, 531, 575, 842
BspCNI	CTCAG	1 cut(s)	281
BspDI	ATCGAT	2 cut(s)	213, 248
BspFNI	CGCG	4 cut(s)	503, 531, 540, 666
BspPI	GGATC	4 cut(s)	74, 157, 541, 622
BsrFI	RCCGGY	1 cut(s)	439
BsrI	ACTGG	2 cut(s)	818, 886
BssAI	RCCGGY	1 cut(s)	439
BssECI	CCNNGG	2 cut(s)	83, 488
BssMI	GATC	6 cut(s)	79, 149, 214, 230, 533, 614
BssT1I	CCWWGG	1 cut(s)	83
Bst4CI	ACNGT	5 cut(s)	489, 718, 764, 873, 895
Bst6I	CTCTTC	4 cut(s)	136, 166, 447, 686
BstDEI	CTNAG	1 cut(s)	268
BstDSI	CCRYGG	2 cut(s)	83, 488
BstF5I	GGATG	2 cut(s)	93, 865
BstFNI	CGCG	4 cut(s)	503, 531, 540, 666
BstHHI	GCGC	1 cut(s)	668
BstKTI	GATC	6 cut(s)	82, 152, 217, 233, 536, 617
BstMAI	GTCTC	2 cut(s)	690, 764
BstMBI	GATC	6 cut(s)	79, 149, 214, 230, 533, 614
BstMWI	GCNNNNNNNGC	4 cut(s)	537, 572, 581, 850
BstSFI	CTRYAG	1 cut(s)	75
BstUI	CGCG	4 cut(s)	503, 531, 540, 666
BstV1I	GCAGC	2 cut(s)	419, 608
BstV2I	GAAGAC	1 cut(s)	743
BstX2I	RGATCY	3 cut(s)	79, 230, 533
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstYI	RGATCY	3 cut(s)	79, 230, 533
Bsu15I	ATCGAT	2 cut(s)	213, 248
BsuTUI	ATCGAT	2 cut(s)	213, 248
BtgI	CCRYGG	2 cut(s)	83, 488
BtsCI	GGATG	2 cut(s)	93, 865
CfoI	GCGC	1 cut(s)	668
Cfr10I	RCCGGY	1 cut(s)	439
ClaI	ATCGAT	2 cut(s)	213, 248
CspAI	ACCGGT	1 cut(s)	439
CspCI	CAANNNNNGTGG	2 cut(s)	470, 505
CviAII	CATG	1 cut(s)	84
CviJI	RGCY	9 cut(s)	62, 74, 123, 337, 383, 410, 547, 578, 584
CviKI_1	RGCY	9 cut(s)	62, 74, 123, 337, 383, 410, 547, 578, 584
DdeI	CTNAG	1 cut(s)	268
DpnI	GATC	6 cut(s)	81, 151, 216, 232, 535, 616
DpnII	GATC	6 cut(s)	79, 149, 214, 230, 533, 614
DraI	TTTAAA	1 cut(s)	298
Eam1104I	CTCTTC	4 cut(s)	136, 166, 447, 686
EarI	CTCTTC	4 cut(s)	136, 166, 447, 686
EciI	GGCGGA	1 cut(s)	521
Eco130I	CCWWGG	1 cut(s)	83
EcoT14I	CCWWGG	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	83
Esp3I	CGTCTC	2 cut(s)	690, 764
FaeI	CATG	1 cut(s)	87
FaiI	YATR	5 cut(s)	85, 196, 236, 588, 808
FaqI	GGGAC	1 cut(s)	565
FatI	CATG	1 cut(s)	83
Fnu4HI	GCNGC	4 cut(s)	408, 504, 576, 597
FokI	GGATG	2 cut(s)	100, 852
Fsp4HI	GCNGC	4 cut(s)	408, 504, 576, 597
FspBI	CTAG	2 cut(s)	120, 579
GlaI	GCGC	1 cut(s)	667
GluI	GCNGC	4 cut(s)	408, 504, 576, 597
HapII	CCGG	3 cut(s)	332, 425, 440
HhaI	GCGC	1 cut(s)	668
Hin1II	CATG	1 cut(s)	87
Hin6I	GCGC	1 cut(s)	666
HinP1I	GCGC	1 cut(s)	666
HincII	GTYRAC	3 cut(s)	754, 760, 891
HindII	GTYRAC	3 cut(s)	754, 760, 891
HinfI	GANTC	9 cut(s)	7, 98, 116, 128, 188, 250, 266, 397, 511
HpaI	GTTAAC	1 cut(s)	760
HpaII	CCGG	3 cut(s)	332, 425, 440
HphI	GGTGA	1 cut(s)	689
Hpy166II	GTNNAC	4 cut(s)	356, 754, 760, 891
Hpy188I	TCNGA	6 cut(s)	127, 149, 187, 271, 286, 448
Hpy188III	TCNNGA	4 cut(s)	40, 218, 515, 641
Hpy8I	GTNNAC	4 cut(s)	356, 754, 760, 891
Hpy99I	CGWCG	2 cut(s)	59, 793
HpyAV	CCTTC	2 cut(s)	312, 668
HpyCH4III	ACNGT	5 cut(s)	489, 718, 764, 873, 895
HpyCH4IV	ACGT	4 cut(s)	554, 756, 773, 788
HpyCH4V	TGCA	2 cut(s)	26, 198
HpyF10VI	GCNNNNNNNGC	4 cut(s)	537, 572, 581, 850
HpyF3I	CTNAG	1 cut(s)	268
HpySE526I	ACGT	4 cut(s)	554, 756, 773, 788
Hsp92II	CATG	1 cut(s)	87
HspAI	GCGC	1 cut(s)	666
KspAI	GTTAAC	1 cut(s)	760
Kzo9I	GATC	6 cut(s)	79, 149, 214, 230, 533, 614
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	9 cut(s)	81, 216, 241, 345, 393, 438, 453, 799, 899
Lsp1109I	GCAGC	2 cut(s)	419, 608
MaeI	CTAG	2 cut(s)	120, 579
MaeII	ACGT	4 cut(s)	554, 756, 773, 788
MaeIII	GTNAC	5 cut(s)	430, 515, 712, 784, 809
MalI	GATC	6 cut(s)	81, 151, 216, 232, 535, 616
MboI	GATC	6 cut(s)	79, 149, 214, 230, 533, 614
MfeI	CAATTG	1 cut(s)	174
MflI	RGATCY	3 cut(s)	79, 230, 533
MluCI	AATT	9 cut(s)	174, 239, 260, 348, 401, 497, 631, 793, 803
MlyI	GAGTC	2 cut(s)	122, 260
MnlI	CCTC	6 cut(s)	52, 169, 464, 605, 648, 873
MseI	TTAA	6 cut(s)	297, 339, 759, 797, 821, 834
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	3 cut(s)	332, 425, 440
MunI	CAATTG	1 cut(s)	174
MvnI	CGCG	4 cut(s)	503, 531, 540, 666
MwoI	GCNNNNNNNGC	4 cut(s)	537, 572, 581, 850
NcoI	CCATGG	1 cut(s)	83
NdeII	GATC	6 cut(s)	79, 149, 214, 230, 533, 614
NlaIII	CATG	1 cut(s)	87
NmuCI	GTSAC	3 cut(s)	515, 712, 809
PfeI	GAWTC	6 cut(s)	98, 116, 188, 250, 397, 511
PflMI	CCANNNNNTGG	1 cut(s)	875
PinAI	ACCGGT	1 cut(s)	439
PkrI	GCNGC	4 cut(s)	409, 505, 577, 598
PleI	GAGTC	2 cut(s)	122, 260
PpsI	GAGTC	2 cut(s)	122, 260
PsuI	RGATCY	3 cut(s)	79, 230, 533
PvuII	CAGCTG	1 cut(s)	410
SaqAI	TTAA	6 cut(s)	297, 339, 759, 797, 821, 834
SatI	GCNGC	4 cut(s)	408, 504, 576, 597
Sau3AI	GATC	6 cut(s)	79, 149, 214, 230, 533, 614
SchI	GAGTC	2 cut(s)	122, 260
SfcI	CTRYAG	1 cut(s)	75
Sse9I	AATT	9 cut(s)	174, 239, 260, 348, 401, 497, 631, 793, 803
SsiI	CCGC	6 cut(s)	359, 503, 506, 531, 575, 842
SspMI	CTAG	2 cut(s)	120, 579
StyI	CCWWGG	1 cut(s)	83
TaaI	ACNGT	5 cut(s)	489, 718, 764, 873, 895
TaiI	ACGT	4 cut(s)	557, 759, 776, 791
TaqI	TCGA	8 cut(s)	39, 54, 213, 219, 248, 291, 617, 791
TasI	AATT	9 cut(s)	174, 239, 260, 348, 401, 497, 631, 793, 803
TauI	GCSGC	2 cut(s)	506, 578
TfiI	GAWTC	6 cut(s)	98, 116, 188, 250, 397, 511
Tru1I	TTAA	6 cut(s)	297, 339, 759, 797, 821, 834
Tru9I	TTAA	6 cut(s)	297, 339, 759, 797, 821, 834
TseFI	GTSAC	3 cut(s)	515, 712, 809
TseI	GCWGC	2 cut(s)	407, 596
Tsp45I	GTSAC	3 cut(s)	515, 712, 809
TspDTI	ATGAA	3 cut(s)	25, 104, 687
TspGWI	ACGGA	5 cut(s)	181, 703, 755, 768, 815
Van91I	CCANNNNNTGG	1 cut(s)	875
XapI	RAATTY	6 cut(s)	239, 260, 348, 497, 631, 793
XspI	CTAG	2 cut(s)	120, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.