Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011952

Physical Location & Seq

Genomic Coordinates Forward (+)

9928587 .. 9929875

Gene Structure 1289 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCCTTCGGAGTTAACACCAGAAGAACGATCGGAACTAAAAAACTCAATCGCCGAGTTCCACACATACCAACTCGATCCAGGAAGCTGTTCATCACTCCACGCGCAACGAATCCACGCGCCTCCGGAACTCGTCTGGTCAATCGTACGACGATTCGACAAACCACAAACATACAAACACTTCATCAAATCCTGCTCCGTCGAACAAAACTTCGAGATGCGCGTCGGATGCACGCGCGACGTGATCGTCATCAGTGGATTACCGGCGAACACATCAACGGAAAGACTCGATATACTCGACGACGAACGGAGAGTTACCGGATTCAGTATCATCGGAGGCGAACATAGGCTGACGAATTACAAATCCGTTACGACGGTGCATCGGTTCGAGAAAGAGAATCGGATCTGGACGGTGGTTTTGGAATCTTACGTCGTTGATATGCCGGAAGGTAACTCGGAGGATGATACTCGTATGTTTGCTGATACGGTTGTGAAGCTTAATTTGCAGAAACTCGCGACGGTTGCTGAAGCTATGGCTCGTAACTCCGGTGACGGAAGTGGTTCTCAGGTGACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009892 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0080163 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701 GO:1905183

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

191

Amino Acids

21.57

Weight (kDa)

5.54

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	36 - 176	1.2e-11	Polyketide cyclase / dehydrase and lipid transport
Polyketide_cyc	PF03364	38 - 171	7.4e-07	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17870 AT5G46790 AT5G46790
fragaria_vesca	FvH4_5g22060
malus_domestica	MD06G1034000.v1.1 MD16G1274400.v1.1
prunus_persica	Prupe.5G036800_v2.0.a1
pyrus_communis	pycom06g02810 pycom16g24460
rosa_chinensis	RchiOBHm_Chr7g0209681
rosa_laevigata	RLG00000003104
rosa_multiflora	Rmu_sc0002616.1_g000004
rosa_roxburghii	Rroxscaffold_3G00249150
rosa_rugosa	Rorug07G0115400
rosa_samantha	Rh7AG249100 Rh7BG243000 Rh7CG265000 Rh7DG254900
rosa_wichuraiana	Rw7G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
AccII	CGCG	6 cut(s)	104, 119, 222, 235, 237, 515
AccIII	TCCGGA	1 cut(s)	124
AclWI	GGATC	2 cut(s)	71, 410
AcuI	CTGAAG	1 cut(s)	546
AfaI	GTAC	1 cut(s)	147
AjiI	CACGTC	2 cut(s)	241, 573
AjnI	CCWGG	1 cut(s)	79
AluBI	AGCT	3 cut(s)	87, 496, 530
AluI	AGCT	3 cut(s)	87, 496, 530
AlwI	GGATC	2 cut(s)	71, 410
Aor13HI	TCCGGA	1 cut(s)	124
ArsI	GACNNNNNNTTYG	2 cut(s)	400, 432
Asp700I	GAANNNNTTC	2 cut(s)	88, 559
AspLEI	GCGC	4 cut(s)	106, 121, 222, 237
AsuHPI	GGTGA	1 cut(s)	560
BaeI	ACNNNNGTAYC	2 cut(s)	474, 507
BciT130I	CCWGG	1 cut(s)	81
Bme1390I	CCNGG	1 cut(s)	81
BmgBI	CACGTC	2 cut(s)	241, 573
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	3 cut(s)	207, 218, 388
BsaBI	GATNNNNATC	1 cut(s)	248
BsaWI	WCCGGW	3 cut(s)	124, 317, 545
Bse118I	RCCGGY	1 cut(s)	262
Bse8I	GATNNNNATC	1 cut(s)	248
BseAI	TCCGGA	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	81
BseGI	GGATG	2 cut(s)	233, 466
BseJI	GATNNNNATC	1 cut(s)	248
Bsh1236I	CGCG	6 cut(s)	104, 119, 222, 235, 237, 515
Bsh1285I	CGRYCG	1 cut(s)	32
BsiEI	CGRYCG	1 cut(s)	32
BsiSI	CCGG	5 cut(s)	125, 263, 318, 443, 546
BsiWI	CGTACG	1 cut(s)	145
Bsp13I	TCCGGA	1 cut(s)	124
Bsp143I	GATC	4 cut(s)	29, 76, 243, 402
Bsp68I	TCGCGA	1 cut(s)	515
BspEI	TCCGGA	1 cut(s)	124
BspFNI	CGCG	6 cut(s)	104, 119, 222, 235, 237, 515
BspPI	GGATC	2 cut(s)	71, 410
BsrFI	RCCGGY	1 cut(s)	262
BssAI	RCCGGY	1 cut(s)	262
BssMI	GATC	4 cut(s)	29, 76, 243, 402
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	4 cut(s)	376, 412, 487, 520
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	564
BstF5I	GGATG	2 cut(s)	233, 466
BstFNI	CGCG	6 cut(s)	104, 119, 222, 235, 237, 515
BstHHI	GCGC	4 cut(s)	106, 121, 222, 237
BstKTI	GATC	4 cut(s)	32, 79, 246, 405
BstMBI	GATC	4 cut(s)	29, 76, 243, 402
BstMCI	CGRYCG	1 cut(s)	32
BstMWI	GCNNNNNNNGC	3 cut(s)	228, 502, 521
BstNI	CCWGG	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	79
BstUI	CGCG	6 cut(s)	104, 119, 222, 235, 237, 515
BstX2I	RGATCY	1 cut(s)	402
BstYI	RGATCY	1 cut(s)	402
BtrI	CACGTC	2 cut(s)	241, 573
BtsCI	GGATG	2 cut(s)	233, 466
BtsIMutI	CAGTG	1 cut(s)	259
BtuMI	TCGCGA	1 cut(s)	515
Cac8I	GCNNGC	1 cut(s)	233
CfoI	GCGC	4 cut(s)	106, 121, 222, 237
Cfr10I	RCCGGY	1 cut(s)	262
CseI	GACGC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	146
CviJI	RGCY	5 cut(s)	87, 349, 496, 530, 536
CviKI_1	RGCY	5 cut(s)	87, 349, 496, 530, 536
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	1 cut(s)	564
DpnI	GATC	4 cut(s)	31, 78, 245, 404
DpnII	GATC	4 cut(s)	29, 76, 243, 402
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	546
EcoRII	CCWGG	1 cut(s)	79
FaiI	YATR	7 cut(s)	67, 172, 293, 345, 440, 473, 533
FokI	GGATG	2 cut(s)	240, 473
GlaI	GCGC	4 cut(s)	105, 120, 221, 236
HapII	CCGG	5 cut(s)	125, 263, 318, 443, 546
HgaI	GACGC	1 cut(s)	211
HhaI	GCGC	4 cut(s)	106, 121, 222, 237
Hin6I	GCGC	4 cut(s)	104, 119, 220, 235
HinP1I	GCGC	4 cut(s)	104, 119, 220, 235
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	6 cut(s)	111, 153, 285, 321, 397, 422
HpaI	GTTAAC	1 cut(s)	15
HpaII	CCGG	5 cut(s)	125, 263, 318, 443, 546
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	6 cut(s)	10, 34, 227, 335, 402, 457
Hpy188III	TCNNGA	5 cut(s)	125, 214, 388, 406, 514
Hpy8I	GTNNAC	1 cut(s)	15
Hpy99I	CGWCG	9 cut(s)	153, 203, 227, 242, 302, 305, 376, 434, 520
HpyAV	CCTTC	2 cut(s)	15, 440
HpyCH4III	ACNGT	4 cut(s)	376, 412, 487, 520
HpyCH4IV	ACGT	3 cut(s)	240, 429, 572
HpyCH4V	TGCA	3 cut(s)	231, 379, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	228, 502, 521
HpyF3I	CTNAG	1 cut(s)	564
HpySE526I	ACGT	3 cut(s)	240, 429, 572
HspAI	GCGC	4 cut(s)	104, 119, 220, 235
Kpn2I	TCCGGA	1 cut(s)	124
KspAI	GTTAAC	1 cut(s)	15
Kzo9I	GATC	4 cut(s)	29, 76, 243, 402
LmnI	GCTCC	1 cut(s)	200
LweI	GCATC	3 cut(s)	207, 218, 388
MaeII	ACGT	3 cut(s)	240, 429, 572
MaeIII	GTNAC	6 cut(s)	313, 367, 449, 539, 548, 568
MalI	GATC	4 cut(s)	31, 78, 245, 404
MboI	GATC	4 cut(s)	29, 76, 243, 402
MboII	GAAGA	1 cut(s)	35
MflI	RGATCY	1 cut(s)	402
MluCI	AATT	2 cut(s)	355, 499
MlyI	GAGTC	1 cut(s)	279
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	3 cut(s)	132, 329, 451
MroI	TCCGGA	1 cut(s)	124
MroXI	GAANNNNTTC	2 cut(s)	88, 559
MseI	TTAA	2 cut(s)	14, 498
MspI	CCGG	5 cut(s)	125, 263, 318, 443, 546
MspR9I	CCNGG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	81
MvnI	CGCG	6 cut(s)	104, 119, 222, 235, 237, 515
MwoI	GCNNNNNNNGC	3 cut(s)	228, 502, 521
NdeII	GATC	4 cut(s)	29, 76, 243, 402
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	2 cut(s)	548, 568
NruI	TCGCGA	1 cut(s)	515
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 294
PdmI	GAANNNNTTC	2 cut(s)	88, 559
PfeI	GAWTC	5 cut(s)	111, 153, 321, 397, 422
Pfl23II	CGTACG	1 cut(s)	145
PfoI	TCCNGGA	1 cut(s)	79
Ple19I	CGATCG	1 cut(s)	32
PleI	GAGTC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PspLI	CGTACG	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	402
PvuI	CGATCG	1 cut(s)	32
RruI	TCGCGA	1 cut(s)	515
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
SaqAI	TTAA	2 cut(s)	14, 498
Sau3AI	GATC	4 cut(s)	29, 76, 243, 402
SchI	GAGTC	1 cut(s)	279
ScrFI	CCNGG	1 cut(s)	81
SetI	ASST	8 cut(s)	89, 243, 432, 451, 498, 532, 570, 575
SfaNI	GCATC	3 cut(s)	207, 218, 388
Sse9I	AATT	2 cut(s)	355, 499
StyD4I	CCNGG	1 cut(s)	79
TaaI	ACNGT	4 cut(s)	376, 412, 487, 520
TaiI	ACGT	3 cut(s)	243, 432, 575
TaqI	TCGA	7 cut(s)	75, 156, 201, 213, 288, 297, 387
TasI	AATT	2 cut(s)	355, 499
TfiI	GAWTC	5 cut(s)	111, 153, 321, 397, 422
Tru1I	TTAA	2 cut(s)	14, 498
Tru9I	TTAA	2 cut(s)	14, 498
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	2 cut(s)	548, 568
Tsp45I	GTSAC	2 cut(s)	548, 568
TspDTI	ATGAA	2 cut(s)	81, 172
TspGWI	ACGGA	5 cut(s)	187, 293, 322, 355, 567
TspRI	CASTG	1 cut(s)	259
XmnI	GAANNNNTTC	2 cut(s)	88, 559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.