Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0011952

Physical Location & Seq

Genomic Coordinates Reverse (-)

44425463 .. 44426531

Gene Structure 1069 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003104

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGAGAAAGCAGCAGCGGAGGGATCCATGGCGGCCGAGCGCGACCCGGAGAGGTCACAGCACCACCTCACAGTACCCTCCGGGTTGACTCAGTCCGAGTTCGAGGAGTTGAAGGCCTGCGTGGCCGAGTTCCACGCGTACCGGGTAGGCCCTGGTTACTGCTCCTCCCTACTGGCGCAGCGAGTCCACGCGCCGCTGGAGACGGTGTGGAGGGTGGTGCGGCGGTTCGACCGGCCGCAGACGTACAAGCACTTCATCCGGAGCTGCACGGTCAGAGAAGGGTTTGTAATGAGCGTGGGATGCACGAGGGAGGTGAATGTAATTTCGGGGCTACCGGCGGCGACGAGCACGGAGAGGCTGGACTTGCTGGACGATGACCGACACGTCACCGGGTTCAGTATTACAGGGGGAGAGCACCGGCTGAGGAATTACCGGTCGGTGACCACCGTGCATGCGTTCGAGCGCGACGGGAGGATCTGGACGGTCGTTTTGGAATCGTACGTGGTGGATGTGCCGGAGGGGAATAGCGAGGAGGAAACTCGGCTGTTCGCCGATACGGTGGTCAGGTTGAATCTGCAGAAGCTGGCGTCGGTCACGGAAGCCATGGCCCGTGACGGTGACGCTAATTTCCAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009892 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0080163 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701 GO:1905183

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

213

Amino Acids

23.81

Weight (kDa)

5.77

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	61 - 199	1.5e-12	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17870 AT5G46790 AT5G46790
fragaria_vesca	FvH4_5g22060
malus_domestica	MD06G1034000.v1.1 MD16G1274400.v1.1
prunus_persica	Prupe.5G036800_v2.0.a1
pyrus_communis	pycom06g02810 pycom16g24460
rosa_chinensis	RchiOBHm_Chr7g0209681
rosa_laevigata	RLG00000003104
rosa_multiflora	Rmu_sc0002616.1_g000004
rosa_roxburghii	Rroxscaffold_3G00249150
rosa_rugosa	Rorug07G0115400
rosa_samantha	Rh7AG249100 Rh7BG243000 Rh7CG265000 Rh7DG254900
rosa_wichuraiana	Rw7G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	383
AccII	CGCG	4 cut(s)	42, 137, 191, 465
AccIII	TCCGGA	1 cut(s)	258
AciI	CCGC	7 cut(s)	17, 32, 194, 220, 223, 236, 338
AclWI	GGATC	3 cut(s)	18, 31, 482
AcoI	YGGCCR	3 cut(s)	33, 123, 233
AcyI	GRCGYC	1 cut(s)	587
AfaI	GTAC	4 cut(s)	75, 140, 245, 500
AflIII	ACRYGT	2 cut(s)	135, 382
AgeI	ACCGGT	1 cut(s)	432
AgsI	TTSAA	2 cut(s)	112, 571
AjiI	CACGTC	1 cut(s)	385
AjnI	CCWGG	2 cut(s)	151, 630
AluBI	AGCT	2 cut(s)	264, 583
AluI	AGCT	2 cut(s)	264, 583
Alw21I	GWGCWC	2 cut(s)	350, 417
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	3 cut(s)	18, 31, 482
AlwNI	CAGNNNCTG	1 cut(s)	583
Aor13HI	TCCGGA	1 cut(s)	258
AoxI	GGCC	6 cut(s)	33, 114, 123, 148, 233, 606
ApeKI	GCWGC	4 cut(s)	11, 14, 178, 264
ArsI	GACNNNNNNTTYG	2 cut(s)	472, 504
AsiGI	ACCGGT	1 cut(s)	432
AspLEI	GCGC	4 cut(s)	42, 178, 193, 465
AspS9I	GGNCC	2 cut(s)	149, 607
AsuC2I	CCSGG	4 cut(s)	47, 82, 143, 391
AsuHPI	GGTGA	4 cut(s)	325, 379, 451, 629
BaeI	ACNNNNGTAYC	2 cut(s)	546, 579
BamHI	GGATCC	1 cut(s)	23
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BauI	CACGAG	1 cut(s)	304
Bbv12I	GWGCWC	2 cut(s)	350, 417
BbvCI	CCTCAGC	1 cut(s)	422
BbvI	GCAGC	4 cut(s)	23, 26, 190, 251
BciT130I	CCWGG	2 cut(s)	153, 632
BcnI	CCSGG	4 cut(s)	47, 82, 143, 391
BcoDI	GTCTC	1 cut(s)	194
BfmI	CTRYAG	1 cut(s)	575
BglI	GCCNNNNNGGC	1 cut(s)	122
BisI	GCNGC	9 cut(s)	12, 15, 33, 179, 194, 221, 236, 265, 339
BlsI	GCNGC	9 cut(s)	13, 16, 34, 180, 195, 222, 237, 266, 340
Bme1390I	CCNGG	6 cut(s)	47, 82, 143, 153, 391, 632
BmgBI	CACGTC	1 cut(s)	385
BmgT120I	GGNCC	2 cut(s)	149, 607
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	6 cut(s)	47, 82, 143, 153, 391, 632
BmsI	GCATC	1 cut(s)	290
BpmI	CTGGAG	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	422
BpuMI	CCSGG	4 cut(s)	47, 82, 143, 391
BsaAI	YACGTR	1 cut(s)	502
BsaHI	GRCGYC	1 cut(s)	587
BsaJI	CCNNGG	3 cut(s)	27, 151, 603
BsaWI	WCCGGW	2 cut(s)	258, 432
BsaXI	ACNNNNNCTCC	4 cut(s)	149, 179, 191, 221
Bse118I	RCCGGY	4 cut(s)	231, 334, 417, 432
Bse1I	ACTGG	1 cut(s)	177
BseAI	TCCGGA	1 cut(s)	258
BseBI	CCWGG	2 cut(s)	153, 632
BseDI	CCNNGG	3 cut(s)	27, 151, 603
BseGI	GGATG	3 cut(s)	255, 305, 514
BseMII	CTCAG	2 cut(s)	104, 413
BseNI	ACTGG	1 cut(s)	177
BseRI	GAGGAG	3 cut(s)	119, 154, 545
BseX3I	CGGCCG	2 cut(s)	33, 233
BseXI	GCAGC	4 cut(s)	23, 26, 190, 251
BsgI	GTGCAG	1 cut(s)	250
Bsh1236I	CGCG	4 cut(s)	42, 137, 191, 465
Bsh1285I	CGRYCG	5 cut(s)	36, 232, 236, 437, 486
BshFI	GGCC	6 cut(s)	35, 116, 125, 150, 235, 608
BshTI	ACCGGT	1 cut(s)	432
BsiEI	CGRYCG	5 cut(s)	36, 232, 236, 437, 486
BsiHKAI	GWGCWC	2 cut(s)	350, 417
BsiWI	CGTACG	1 cut(s)	498
BsmAI	GTCTC	1 cut(s)	194
BsmBI	CGTCTC	1 cut(s)	194
BsnI	GGCC	6 cut(s)	35, 116, 125, 150, 235, 608
Bsp1286I	GDGCHC	2 cut(s)	350, 417
Bsp13I	TCCGGA	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	23, 474
Bsp19I	CCATGG	2 cut(s)	27, 603
BspACI	CCGC	7 cut(s)	17, 32, 194, 220, 223, 236, 338
BspANI	GGCC	6 cut(s)	35, 116, 125, 150, 235, 608
BspCNI	CTCAG	2 cut(s)	103, 414
BspEI	TCCGGA	1 cut(s)	258
BspFNI	CGCG	4 cut(s)	42, 137, 191, 465
BspLI	GGNNCC	1 cut(s)	25
BspMAI	CTGCAG	1 cut(s)	579
BspPI	GGATC	3 cut(s)	18, 31, 482
BsrFI	RCCGGY	4 cut(s)	231, 334, 417, 432
BsrI	ACTGG	1 cut(s)	177
BssAI	RCCGGY	4 cut(s)	231, 334, 417, 432
BssECI	CCNNGG	3 cut(s)	27, 151, 603
BssMI	GATC	2 cut(s)	23, 474
BssNI	GRCGYC	1 cut(s)	587
BssSI	CACGAG	1 cut(s)	304
BssT1I	CCWWGG	2 cut(s)	27, 603
Bst2BI	CACGAG	1 cut(s)	304
Bst2UI	CCWGG	2 cut(s)	153, 632
Bst4CI	ACNGT	7 cut(s)	73, 205, 271, 448, 484, 559, 617
BstACI	GRCGYC	1 cut(s)	587
BstBAI	YACGTR	1 cut(s)	502
BstC8I	GCNNGC	3 cut(s)	118, 453, 585
BstDEI	CTNAG	2 cut(s)	90, 422
BstDSI	CCRYGG	2 cut(s)	27, 603
BstEII	GGTNACC	1 cut(s)	439
BstF5I	GGATG	3 cut(s)	255, 305, 514
BstFNI	CGCG	4 cut(s)	42, 137, 191, 465
BstHHI	GCGC	4 cut(s)	42, 178, 193, 465
BstKTI	GATC	2 cut(s)	26, 477
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	2 cut(s)	23, 474
BstMCI	CGRYCG	5 cut(s)	36, 232, 236, 437, 486
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 300, 364
BstNI	CCWGG	2 cut(s)	153, 632
BstNSI	RCATGY	1 cut(s)	455
BstPI	GGTNACC	1 cut(s)	439
BstSCI	CCNGG	6 cut(s)	45, 80, 141, 151, 389, 630
BstSFI	CTRYAG	1 cut(s)	575
BstUI	CGCG	4 cut(s)	42, 137, 191, 465
BstV1I	GCAGC	4 cut(s)	23, 26, 190, 251
BstX2I	RGATCY	2 cut(s)	23, 474
BstYI	RGATCY	2 cut(s)	23, 474
BstZI	CGGCCG	2 cut(s)	33, 233
BsuRI	GGCC	6 cut(s)	35, 116, 125, 150, 235, 608
BtgI	CCRYGG	2 cut(s)	27, 603
BtrI	CACGTC	1 cut(s)	385
BtsCI	GGATG	3 cut(s)	255, 305, 514
Cac8I	GCNNGC	3 cut(s)	118, 453, 585
CaiI	CAGNNNCTG	1 cut(s)	583
CfoI	GCGC	4 cut(s)	42, 178, 193, 465
Cfr10I	RCCGGY	4 cut(s)	231, 334, 417, 432
Cfr13I	GGNCC	2 cut(s)	149, 607
CseI	GACGC	2 cut(s)	576, 629
Csp6I	GTAC	4 cut(s)	74, 139, 244, 499
CspAI	ACCGGT	1 cut(s)	432
CviAII	CATG	3 cut(s)	28, 452, 604
CviQI	GTAC	4 cut(s)	74, 139, 244, 499
DdeI	CTNAG	2 cut(s)	90, 422
DpnI	GATC	2 cut(s)	25, 476
DpnII	GATC	2 cut(s)	23, 474
DrdI	GACNNNNNNGTC	1 cut(s)	383
DseDI	GACNNNNNNGTC	1 cut(s)	383
EaeI	YGGCCR	3 cut(s)	33, 123, 233
EagI	CGGCCG	2 cut(s)	33, 233
EclXI	CGGCCG	2 cut(s)	33, 233
Eco130I	CCWWGG	2 cut(s)	27, 603
Eco147I	AGGCCT	1 cut(s)	116
Eco52I	CGGCCG	2 cut(s)	33, 233
Eco91I	GGTNACC	1 cut(s)	439
EcoO109I	RGGNCCY	1 cut(s)	149
EcoO65I	GGTNACC	1 cut(s)	439
EcoRII	CCWGG	2 cut(s)	151, 630
EcoT14I	CCWWGG	2 cut(s)	27, 603
ErhI	CCWWGG	2 cut(s)	27, 603
Esp3I	CGTCTC	1 cut(s)	194
FaeI	CATG	3 cut(s)	31, 455, 607
FaiI	YATR	3 cut(s)	29, 453, 605
FatI	CATG	3 cut(s)	27, 451, 603
Fnu4HI	GCNGC	9 cut(s)	12, 15, 33, 179, 194, 221, 236, 265, 339
FokI	GGATG	3 cut(s)	242, 312, 521
Fsp4HI	GCNGC	9 cut(s)	12, 15, 33, 179, 194, 221, 236, 265, 339
GlaI	GCGC	4 cut(s)	41, 177, 192, 464
GluI	GCNGC	9 cut(s)	12, 15, 33, 179, 194, 221, 236, 265, 339
GsuI	CTGGAG	1 cut(s)	218
HaeIII	GGCC	6 cut(s)	35, 116, 125, 150, 235, 608
HgaI	GACGC	2 cut(s)	576, 629
HhaI	GCGC	4 cut(s)	42, 178, 193, 465
Hin1I	GRCGYC	1 cut(s)	587
Hin1II	CATG	3 cut(s)	31, 455, 607
Hin6I	GCGC	4 cut(s)	40, 176, 191, 463
HinP1I	GCGC	4 cut(s)	40, 176, 191, 463
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HinfI	GANTC	4 cut(s)	88, 183, 494, 571
HphI	GGTGA	4 cut(s)	325, 379, 451, 629
Hpy166II	GTNNAC	2 cut(s)	87, 187
Hpy188I	TCNGA	3 cut(s)	97, 275, 638
Hpy188III	TCNNGA	2 cut(s)	259, 478
Hpy8I	GTNNAC	2 cut(s)	87, 187
Hpy99I	CGWCG	3 cut(s)	346, 470, 592
HpyAV	CCTTC	2 cut(s)	106, 272
HpyCH4III	ACNGT	7 cut(s)	73, 205, 271, 448, 484, 559, 617
HpyCH4IV	ACGT	3 cut(s)	242, 384, 501
HpyCH4V	TGCA	4 cut(s)	267, 303, 451, 577
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 300, 364
HpyF3I	CTNAG	2 cut(s)	90, 422
HpySE526I	ACGT	3 cut(s)	242, 384, 501
Hsp92I	GRCGYC	1 cut(s)	587
Hsp92II	CATG	3 cut(s)	31, 455, 607
HspAI	GCGC	4 cut(s)	40, 176, 191, 463
Kpn2I	TCCGGA	1 cut(s)	258
Kzo9I	GATC	2 cut(s)	23, 474
LmnI	GCTCC	2 cut(s)	167, 261
Lsp1109I	GCAGC	4 cut(s)	23, 26, 190, 251
LweI	GCATC	1 cut(s)	290
MaeII	ACGT	3 cut(s)	242, 384, 501
MaeIII	GTNAC	7 cut(s)	54, 155, 385, 439, 592, 611, 617
MalI	GATC	2 cut(s)	25, 476
MboI	GATC	2 cut(s)	23, 474
MflI	RGATCY	2 cut(s)	23, 474
MhlI	GDGCHC	2 cut(s)	350, 417
MluCI	AATT	3 cut(s)	321, 427, 625
MluI	ACGCGT	1 cut(s)	135
MlyI	GAGTC	2 cut(s)	82, 192
MroI	TCCGGA	1 cut(s)	258
MspA1I	CMGCKG	2 cut(s)	17, 196
MspR9I	CCNGG	6 cut(s)	47, 82, 143, 153, 391, 632
MvaI	CCWGG	2 cut(s)	153, 632
MvnI	CGCG	4 cut(s)	42, 137, 191, 465
MwoI	GCNNNNNNNGC	3 cut(s)	122, 300, 364
NciI	CCSGG	4 cut(s)	47, 82, 143, 391
NcoI	CCATGG	2 cut(s)	27, 603
NdeII	GATC	2 cut(s)	23, 474
NlaIII	CATG	3 cut(s)	31, 455, 607
NlaIV	GGNNCC	1 cut(s)	25
NmeAIII	GCCGAG	3 cut(s)	61, 151, 520
NmuCI	GTSAC	6 cut(s)	54, 385, 439, 592, 611, 617
NspI	RCATGY	1 cut(s)	455
PaeI	GCATGC	1 cut(s)	455
PceI	AGGCCT	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	494, 571
Pfl23II	CGTACG	1 cut(s)	498
PflFI	GACNNNGTC	1 cut(s)	91
PinAI	ACCGGT	1 cut(s)	432
PkrI	GCNGC	9 cut(s)	13, 16, 34, 180, 195, 222, 237, 266, 340
PleI	GAGTC	2 cut(s)	82, 191
PpsI	GAGTC	2 cut(s)	82, 191
Ppu21I	YACGTR	1 cut(s)	502
Psp6I	CCWGG	2 cut(s)	151, 630
PspEI	GGTNACC	1 cut(s)	439
PspGI	CCWGG	2 cut(s)	151, 630
PspLI	CGTACG	1 cut(s)	498
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	2 cut(s)	149, 607
PstI	CTGCAG	1 cut(s)	579
PstNI	CAGNNNCTG	1 cut(s)	583
PsuI	RGATCY	2 cut(s)	23, 474
PsyI	GACNNNGTC	1 cut(s)	91
RsaI	GTAC	4 cut(s)	75, 140, 245, 500
RsaNI	GTAC	4 cut(s)	74, 139, 244, 499
SatI	GCNGC	9 cut(s)	12, 15, 33, 179, 194, 221, 236, 265, 339
Sau3AI	GATC	2 cut(s)	23, 474
Sau96I	GGNCC	2 cut(s)	149, 607
SchI	GAGTC	2 cut(s)	82, 192
ScrFI	CCNGG	6 cut(s)	47, 82, 143, 153, 391, 632
SduI	GDGCHC	2 cut(s)	350, 417
SfaNI	GCATC	1 cut(s)	290
SfcI	CTRYAG	1 cut(s)	575
SfiI	GGCCNNNNNGGCC	1 cut(s)	122
SphI	GCATGC	1 cut(s)	455
Sse9I	AATT	3 cut(s)	321, 427, 625
SseBI	AGGCCT	1 cut(s)	116
SsiI	CCGC	7 cut(s)	17, 32, 194, 220, 223, 236, 338
StuI	AGGCCT	1 cut(s)	116
StyD4I	CCNGG	6 cut(s)	45, 80, 141, 151, 389, 630
StyI	CCWWGG	2 cut(s)	27, 603
TaaI	ACNGT	7 cut(s)	73, 205, 271, 448, 484, 559, 617
TaiI	ACGT	3 cut(s)	245, 387, 504
TaqI	TCGA	3 cut(s)	102, 228, 459
TaqII	GACCGA	2 cut(s)	393, 580
TasI	AATT	3 cut(s)	321, 427, 625
TauI	GCSGC	5 cut(s)	35, 196, 223, 238, 341
TfiI	GAWTC	2 cut(s)	494, 571
TseFI	GTSAC	6 cut(s)	54, 385, 439, 592, 611, 617
TseI	GCWGC	4 cut(s)	11, 14, 178, 264
Tsp45I	GTSAC	6 cut(s)	54, 385, 439, 592, 611, 617
TspDTI	ATGAA	1 cut(s)	244
TspGWI	ACGGA	2 cut(s)	365, 611
Tth111I	GACNNNGTC	1 cut(s)	91
XceI	RCATGY	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.