Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011952

Physical Location & Seq

Genomic Coordinates Reverse (-)

18983540 .. 18984923

Gene Structure 1384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G46790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCGAATTCAGAGTCCTCCTCCTCACCAGTAAACGAAGAAGAGAACAGCCAGAGAATCTCAACACTCCATCACCAAACCATGCCTTCCGATTTAACTCAAGACGAATTCACCCAACTCTCCCAATCAATCGCCGAGTTCCACACGTACCAACTCGGTAACGGCCGTTGCTCATCTCTCCTAGCTCAGCGAATCCACGCGCCGCCGGAAACAGTATGGTCCGTGGTGAGACGTTTCGATAGGCCACAGATTTACAAACACTTCATCAAAAGCTGTAACGTGAGTGAAGATTTCGAGATGCGAGTGGGATGCACGCGCGACGTGAACGTGATAAGTGGATTACCGGCGAATACGTCTCGAGAGAGATTAGATCTGTTGGACGATGATCGGAGAGTGACTGGGTTTAGTATAACCGGTGGTGAACATAGGCTGAGGAATTATAAATCGGTTACGACGGTTCATAGATTTGAGAAAGAAGAAGAAGAAGAAAGGATCTGGACCGTTGTTTTGGAATCTTATGTTGTTGATGTACCGGAAGGTAATTCGGAGGAAGATACGAGATTGTTTGCTGATACGGTTATTAGATTGAATCTTCAGAAACTTGCTTCGATCACTGAAGCTATGAACCGGAACAACAACAACAACAACTCTTCTCAGGTTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009892 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0080163 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701 GO:1905183

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

221

Amino Acids

25.36

Weight (kDa)

5.32

Isoelectric Point (pI)

53.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	64 - 203	6.2e-12	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17870 AT5G46790 AT5G46790
fragaria_vesca	FvH4_5g22060
malus_domestica	MD06G1034000.v1.1 MD16G1274400.v1.1
prunus_persica	Prupe.5G036800_v2.0.a1
pyrus_communis	pycom06g02810 pycom16g24460
rosa_chinensis	RchiOBHm_Chr7g0209681
rosa_laevigata	RLG00000003104
rosa_multiflora	Rmu_sc0002616.1_g000004
rosa_roxburghii	Rroxscaffold_3G00249150
rosa_rugosa	Rorug07G0115400
rosa_samantha	Rh7AG249100 Rh7BG243000 Rh7CG265000 Rh7DG254900
rosa_wichuraiana	Rw7G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
AccII	CGCG	3 cut(s)	200, 316, 318
AciI	CCGC	1 cut(s)	203
AclWI	GGATC	1 cut(s)	500
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	2 cut(s)	7, 107
AcuI	CTGAAG	2 cut(s)	578, 636
AfaI	GTAC	2 cut(s)	149, 531
AflIII	ACRYGT	1 cut(s)	144
AgeI	ACCGGT	1 cut(s)	413
AgsI	TTSAA	1 cut(s)	589
AjiI	CACGTC	1 cut(s)	322
AluBI	AGCT	3 cut(s)	185, 273, 620
AluI	AGCT	3 cut(s)	185, 273, 620
Alw26I	GTCTC	2 cut(s)	223, 360
AlwI	GGATC	1 cut(s)	500
Ama87I	CYCGRG	1 cut(s)	357
AoxI	GGCC	2 cut(s)	163, 242
ApoI	RAATTY	2 cut(s)	7, 107
ArsI	GACNNNNNNTTYG	3 cut(s)	31, 490, 522
AsiGI	ACCGGT	1 cut(s)	413
AspLEI	GCGC	2 cut(s)	202, 318
AspS9I	GGNCC	2 cut(s)	219, 498
AsuHPI	GGTGA	5 cut(s)	18, 65, 103, 238, 431
AvaI	CYCGRG	1 cut(s)	357
AvaII	GGWCC	2 cut(s)	219, 498
BbvCI	CCTCAGC	1 cut(s)	431
BccI	CCATC	1 cut(s)	78
BceAI	ACGGC	2 cut(s)	150, 178
BcgI	CGANNNNNNTGC	2 cut(s)	291, 325
BcoDI	GTCTC	2 cut(s)	223, 360
BfaI	CTAG	1 cut(s)	182
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	1 cut(s)	203
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	204
Bme18I	GGWCC	2 cut(s)	219, 498
BmeT110I	CYCGRG	1 cut(s)	357
BmgBI	CACGTC	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	219, 498
BmrI	ACTGGG	1 cut(s)	408
BmsI	GCATC	2 cut(s)	288, 299
BmuI	ACTGGG	1 cut(s)	408
BplI	GAGNNNNNCTC	1 cut(s)	37
Bpu10I	CCTNAGC	1 cut(s)	431
Bpu1102I	GCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	84
BsaAI	YACGTR	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	222
BsaWI	WCCGGW	3 cut(s)	413, 532, 627
Bse118I	RCCGGY	2 cut(s)	343, 413
Bse1I	ACTGG	2 cut(s)	29, 403
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	314
BseMII	CTCAG	2 cut(s)	200, 422
BseNI	ACTGG	2 cut(s)	29, 403
BseRI	GAGGAG	2 cut(s)	10, 13
BseX3I	CGGCCG	1 cut(s)	163
Bsh1236I	CGCG	3 cut(s)	200, 316, 318
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	165, 244
BshTI	ACCGGT	1 cut(s)	413
BsiEI	CGRYCG	1 cut(s)	166
BsiHKCI	CYCGRG	1 cut(s)	357
BsiSI	CCGG	5 cut(s)	206, 344, 414, 533, 628
BsmAI	GTCTC	2 cut(s)	223, 360
BsmBI	CGTCTC	2 cut(s)	223, 360
BsnI	GGCC	2 cut(s)	165, 244
BsoBI	CYCGRG	1 cut(s)	357
Bsp143I	GATC	4 cut(s)	370, 385, 492, 609
Bsp1720I	GCTNAGC	1 cut(s)	186
BspACI	CCGC	1 cut(s)	203
BspANI	GGCC	2 cut(s)	165, 244
BspCNI	CTCAG	2 cut(s)	199, 423
BspFNI	CGCG	3 cut(s)	200, 316, 318
BspPI	GGATC	1 cut(s)	500
BsrFI	RCCGGY	2 cut(s)	343, 413
BsrI	ACTGG	2 cut(s)	29, 403
BssAI	RCCGGY	2 cut(s)	343, 413
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	4 cut(s)	370, 385, 492, 609
Bst4CI	ACNGT	4 cut(s)	214, 457, 502, 577
Bst6I	CTCTTC	2 cut(s)	36, 655
BstBAI	YACGTR	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	314
BstDEI	CTNAG	3 cut(s)	186, 431, 654
BstDSI	CCRYGG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	314
BstFNI	CGCG	3 cut(s)	200, 316, 318
BstHHI	GCGC	2 cut(s)	202, 318
BstKTI	GATC	4 cut(s)	373, 388, 495, 612
BstMAI	GTCTC	2 cut(s)	223, 360
BstMBI	GATC	4 cut(s)	370, 385, 492, 609
BstMCI	CGRYCG	1 cut(s)	166
BstUI	CGCG	3 cut(s)	200, 316, 318
BstX2I	RGATCY	2 cut(s)	370, 492
BstYI	RGATCY	2 cut(s)	370, 492
BstZI	CGGCCG	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	165, 244
BtgI	CCRYGG	1 cut(s)	222
BtrI	CACGTC	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	314
BtsIMutI	CAGTG	1 cut(s)	612
Cac8I	GCNNGC	1 cut(s)	314
CfoI	GCGC	2 cut(s)	202, 318
Cfr10I	RCCGGY	2 cut(s)	343, 413
Cfr13I	GGNCC	2 cut(s)	219, 498
Csp6I	GTAC	2 cut(s)	148, 530
CspAI	ACCGGT	1 cut(s)	413
CviAII	CATG	1 cut(s)	82
CviJI	RGCY	7 cut(s)	51, 165, 185, 244, 273, 430, 620
CviKI_1	RGCY	7 cut(s)	51, 165, 185, 244, 273, 430, 620
CviQI	GTAC	2 cut(s)	148, 530
DdeI	CTNAG	3 cut(s)	186, 431, 654
DpnI	GATC	4 cut(s)	372, 387, 494, 611
DpnII	GATC	4 cut(s)	370, 385, 492, 609
EaeI	YGGCCR	1 cut(s)	163
EagI	CGGCCG	1 cut(s)	163
Eam1104I	CTCTTC	2 cut(s)	36, 655
EarI	CTCTTC	2 cut(s)	36, 655
EclXI	CGGCCG	1 cut(s)	163
Eco47I	GGWCC	2 cut(s)	219, 498
Eco52I	CGGCCG	1 cut(s)	163
Eco57I	CTGAAG	2 cut(s)	578, 636
Eco88I	CYCGRG	1 cut(s)	357
EcoRI	GAATTC	2 cut(s)	7, 107
Esp3I	CGTCTC	2 cut(s)	223, 360
FaeI	CATG	1 cut(s)	85
FaiI	YATR	8 cut(s)	83, 217, 410, 426, 441, 462, 519, 623
FatI	CATG	1 cut(s)	81
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	1 cut(s)	321
Fsp4HI	GCNGC	1 cut(s)	203
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	2 cut(s)	201, 317
GluI	GCNGC	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	165, 244
HapII	CCGG	5 cut(s)	206, 344, 414, 533, 628
HhaI	GCGC	2 cut(s)	202, 318
Hin1II	CATG	1 cut(s)	85
Hin6I	GCGC	2 cut(s)	200, 316
HinP1I	GCGC	2 cut(s)	200, 316
HinfI	GANTC	5 cut(s)	14, 57, 192, 512, 589
HpaII	CCGG	5 cut(s)	206, 344, 414, 533, 628
HphI	GGTGA	5 cut(s)	18, 65, 103, 238, 431
Hpy166II	GTNNAC	3 cut(s)	34, 325, 422
Hpy188I	TCNGA	5 cut(s)	13, 91, 390, 547, 597
Hpy188III	TCNNGA	5 cut(s)	101, 295, 357, 359, 496
Hpy8I	GTNNAC	3 cut(s)	34, 325, 422
Hpy99I	CGWCG	2 cut(s)	323, 457
HpyAV	CCTTC	2 cut(s)	96, 530
HpyCH4III	ACNGT	4 cut(s)	214, 457, 502, 577
HpyCH4IV	ACGT	6 cut(s)	146, 232, 279, 321, 327, 353
HpyCH4V	TGCA	1 cut(s)	312
HpyF3I	CTNAG	3 cut(s)	186, 431, 654
HpySE526I	ACGT	6 cut(s)	146, 232, 279, 321, 327, 353
Hsp92II	CATG	1 cut(s)	85
HspAI	GCGC	2 cut(s)	200, 316
Kzo9I	GATC	4 cut(s)	370, 385, 492, 609
LweI	GCATC	2 cut(s)	288, 299
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	6 cut(s)	146, 232, 279, 321, 327, 353
MaeIII	GTNAC	4 cut(s)	158, 275, 394, 448
MalI	GATC	4 cut(s)	372, 387, 494, 611
MboI	GATC	4 cut(s)	370, 385, 492, 609
MflI	RGATCY	2 cut(s)	370, 492
MluCI	AATT	4 cut(s)	7, 107, 436, 541
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	5 cut(s)	28, 31, 34, 426, 541
MseI	TTAA	1 cut(s)	95
MspI	CCGG	5 cut(s)	206, 344, 414, 533, 628
MvnI	CGCG	3 cut(s)	200, 316, 318
NdeII	GATC	4 cut(s)	370, 385, 492, 609
NlaIII	CATG	1 cut(s)	85
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	394
PaeR7I	CTCGAG	1 cut(s)	357
PfeI	GAWTC	4 cut(s)	57, 192, 512, 589
PinAI	ACCGGT	1 cut(s)	413
PkrI	GCNGC	1 cut(s)	204
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Ppu21I	YACGTR	1 cut(s)	147
PsiI	TTATAA	1 cut(s)	441
PspPI	GGNCC	2 cut(s)	219, 498
PsuI	RGATCY	2 cut(s)	370, 492
RsaI	GTAC	2 cut(s)	149, 531
RsaNI	GTAC	2 cut(s)	148, 530
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	4 cut(s)	370, 385, 492, 609
Sau96I	GGNCC	2 cut(s)	219, 498
SchI	GAGTC	1 cut(s)	23
SfaNI	GCATC	2 cut(s)	288, 299
Sfr274I	CTCGAG	1 cut(s)	357
SinI	GGWCC	2 cut(s)	219, 498
SlaI	CTCGAG	1 cut(s)	357
SmlI	CTYRAG	2 cut(s)	99, 357
SmoI	CTYRAG	2 cut(s)	99, 357
Sse9I	AATT	4 cut(s)	7, 107, 436, 541
SsiI	CCGC	1 cut(s)	203
SspMI	CTAG	1 cut(s)	182
TaaI	ACNGT	4 cut(s)	214, 457, 502, 577
TaiI	ACGT	6 cut(s)	149, 235, 282, 324, 330, 356
TaqI	TCGA	4 cut(s)	237, 294, 358, 608
TasI	AATT	4 cut(s)	7, 107, 436, 541
TauI	GCSGC	1 cut(s)	205
TfiI	GAWTC	4 cut(s)	57, 192, 512, 589
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TscAI	CASTG	1 cut(s)	619
TseFI	GTSAC	1 cut(s)	394
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	3 cut(s)	253, 449, 638
TspGWI	ACGGA	1 cut(s)	211
TspRI	CASTG	1 cut(s)	619
VpaK11BI	GGWCC	2 cut(s)	219, 498
XapI	RAATTY	2 cut(s)	7, 107
XhoI	CTCGAG	1 cut(s)	357
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.