Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011952

Physical Location & Seq

Genomic Coordinates Forward (+)

13404854 .. 13409755

Gene Structure 4902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g22060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGAGAAACCATCATCGGCGGCGGAGCAAGACCCGGAGAGCTCGCAGCATCACCTCACAGTCCCCTCTGGACTGACCCAGTCCGAGTTCGACGACCTCAAGCCCGTCGTGGCCGAGTTCCACACCTACCGTGTGGGCCCTGGCCATTGCTCCTCCCTACTCGCGCAGCGAATCCACGCGCCGCTGGAGACGGTGTGGAAGGTGGTGAGGCGGTTCGATAAGCCGCAGACGTACAAGCACTTCATCCGGAGCTGCACAGTGAAAGAAGGCTTCGTAATGAGCGTGGGATGCACGAGGGACGTGAATGTAATTTCCGGGCTGCCGGCGGCGACGAGCACGGAGAGGCTGGACTTGCTGGACGAGGAGAGGCACGTGACTGGTTTCAGTATTATAGGAGGGGAGCACAGGTTGAGGAATTACCGGTCGGTGACCACCGTGCATGGGTTTGAGCGCGACGGGAGGATCTGGACAGTTGTTCTGGAATCGTACGTGGTGGATGTGCCGGAGGGGAACAGCGAGGAGGACACGCGGCTGTTCGCGGATACGGTGGTGAGGTTGAATCTGCAGAAGCTGGCGTCGGTGACGGAAGCCATGGCCCGTGACGGTGACGCTAACTCCCAGAGGAAGAAAATTGCGTTCTTTCACTTCATAATGCAACAAAGTTTGTATTATACAGATCATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009892 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0080163 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701 GO:1905183

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

229

Amino Acids

25.82

Weight (kDa)

6.12

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	57 - 195	9.4e-12	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17870 AT5G46790 AT5G46790
fragaria_vesca	FvH4_5g22060
malus_domestica	MD06G1034000.v1.1 MD16G1274400.v1.1
prunus_persica	Prupe.5G036800_v2.0.a1
pyrus_communis	pycom06g02810 pycom16g24460
rosa_chinensis	RchiOBHm_Chr7g0209681
rosa_laevigata	RLG00000003104
rosa_multiflora	Rmu_sc0002616.1_g000004
rosa_roxburghii	Rroxscaffold_3G00249150
rosa_rugosa	Rorug07G0115400
rosa_samantha	Rh7AG249100 Rh7BG243000 Rh7CG265000 Rh7DG254900
rosa_wichuraiana	Rw7G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	164, 179, 453, 529, 539
AccIII	TCCGGA	1 cut(s)	246
AciI	CCGC	8 cut(s)	20, 23, 182, 211, 224, 326, 529, 539
AclWI	GGATC	1 cut(s)	470
AcoI	YGGCCR	2 cut(s)	111, 142
AcvI	CACGTG	1 cut(s)	373
AcyI	GRCGYC	1 cut(s)	575
AfaI	GTAC	2 cut(s)	233, 488
AfiI	CCNNNNNNNGG	1 cut(s)	441
AgeI	ACCGGT	1 cut(s)	420
AgsI	TTSAA	1 cut(s)	559
AjiI	CACGTC	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	3 cut(s)	42, 252, 571
AluI	AGCT	3 cut(s)	42, 252, 571
Alw21I	GWGCWC	3 cut(s)	44, 338, 405
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	1 cut(s)	470
AlwNI	CAGNNNCTG	1 cut(s)	571
Aor13HI	TCCGGA	1 cut(s)	246
AoxI	GGCC	4 cut(s)	111, 136, 142, 594
ApaI	GGGCCC	1 cut(s)	140
ApeKI	GCWGC	4 cut(s)	46, 166, 252, 319
AsiGI	ACCGGT	1 cut(s)	420
AspLEI	GCGC	3 cut(s)	166, 181, 453
AspS9I	GGNCC	3 cut(s)	136, 137, 595
AsuC2I	CCSGG	2 cut(s)	35, 316
AsuHPI	GGTGA	6 cut(s)	44, 217, 439, 562, 592, 617
BaeGI	GKGCMC	1 cut(s)	140
BaeI	ACNNNNGTAYC	2 cut(s)	534, 567
BalI	TGGCCA	1 cut(s)	144
BanII	GRGCYC	2 cut(s)	44, 140
BarI	GAAGNNNNNNTAC	2 cut(s)	224, 256
BauI	CACGAG	1 cut(s)	292
BbrPI	CACGTG	1 cut(s)	373
Bbv12I	GWGCWC	3 cut(s)	44, 338, 405
BbvI	GCAGC	4 cut(s)	58, 178, 239, 306
BccI	CCATC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	141
BciVI	GTATCC	1 cut(s)	535
BcnI	CCSGG	2 cut(s)	35, 316
BcoDI	GTCTC	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	563
BfuI	GTATCC	1 cut(s)	535
BisI	GCNGC	9 cut(s)	21, 47, 167, 182, 224, 253, 320, 327, 530
BlsI	GCNGC	9 cut(s)	22, 48, 168, 183, 225, 254, 321, 328, 531
Bme1390I	CCNGG	3 cut(s)	35, 141, 316
BmgBI	CACGTC	1 cut(s)	301
BmgT120I	GGNCC	3 cut(s)	136, 137, 595
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	3 cut(s)	35, 141, 316
BmrI	ACTGGG	1 cut(s)	73
BmsI	GCATC	2 cut(s)	58, 278
BmuI	ACTGGG	1 cut(s)	73
BpmI	CTGGAG	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	83
BpuMI	CCSGG	2 cut(s)	35, 316
BsaAI	YACGTR	2 cut(s)	373, 490
BsaHI	GRCGYC	1 cut(s)	575
BsaJI	CCNNGG	2 cut(s)	139, 591
BsaWI	WCCGGW	2 cut(s)	246, 420
BsaXI	ACNNNNNCTCC	6 cut(s)	179, 209, 392, 422, 599, 629
Bsc4I	CCNNNNNNNGG	1 cut(s)	441
Bse118I	RCCGGY	2 cut(s)	322, 420
Bse1I	ACTGG	2 cut(s)	79, 382
Bse3DI	GCAATG	1 cut(s)	145
BseAI	TCCGGA	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	139, 591
BseGI	GGATG	3 cut(s)	243, 293, 502
BseLI	CCNNNNNNNGG	1 cut(s)	441
BseMI	GCAATG	1 cut(s)	145
BseNI	ACTGG	2 cut(s)	79, 382
BseRI	GAGGAG	3 cut(s)	142, 377, 533
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	4 cut(s)	58, 178, 239, 306
BsgI	GTGCAG	1 cut(s)	238
Bsh1236I	CGCG	5 cut(s)	164, 179, 453, 529, 539
Bsh1285I	CGRYCG	1 cut(s)	425
BshFI	GGCC	4 cut(s)	113, 138, 144, 596
BshTI	ACCGGT	1 cut(s)	420
BsiEI	CGRYCG	1 cut(s)	425
BsiHKAI	GWGCWC	3 cut(s)	44, 338, 405
BsiSI	CCGG	6 cut(s)	35, 247, 315, 323, 421, 503
BsiWI	CGTACG	1 cut(s)	486
BslFI	GGGAC	2 cut(s)	47, 311
BslI	CCNNNNNNNGG	1 cut(s)	441
BsmAI	GTCTC	1 cut(s)	182
BsmBI	CGTCTC	1 cut(s)	182
BsmFI	GGGAC	2 cut(s)	47, 311
BsnI	GGCC	4 cut(s)	113, 138, 144, 596
Bsp120I	GGGCCC	1 cut(s)	136
Bsp1286I	GDGCHC	4 cut(s)	44, 140, 338, 405
Bsp13I	TCCGGA	1 cut(s)	246
Bsp143I	GATC	2 cut(s)	462, 676
Bsp19I	CCATGG	1 cut(s)	591
BspACI	CCGC	8 cut(s)	20, 23, 182, 211, 224, 326, 529, 539
BspANI	GGCC	4 cut(s)	113, 138, 144, 596
BspEI	TCCGGA	1 cut(s)	246
BspFNI	CGCG	5 cut(s)	164, 179, 453, 529, 539
BspLI	GGNNCC	1 cut(s)	138
BspMAI	CTGCAG	1 cut(s)	567
BspPI	GGATC	1 cut(s)	470
BsrDI	GCAATG	1 cut(s)	145
BsrFI	RCCGGY	2 cut(s)	322, 420
BsrI	ACTGG	2 cut(s)	79, 382
BssAI	RCCGGY	2 cut(s)	322, 420
BssECI	CCNNGG	2 cut(s)	139, 591
BssMI	GATC	2 cut(s)	462, 676
BssNI	GRCGYC	1 cut(s)	575
BssSI	CACGAG	1 cut(s)	292
BssT1I	CCWWGG	1 cut(s)	591
Bst2BI	CACGAG	1 cut(s)	292
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	8 cut(s)	61, 131, 193, 259, 436, 472, 547, 605
BstACI	GRCGYC	1 cut(s)	575
BstBAI	YACGTR	2 cut(s)	373, 490
BstC8I	GCNNGC	3 cut(s)	44, 324, 573
BstDSI	CCRYGG	1 cut(s)	591
BstEII	GGTNACC	1 cut(s)	427
BstF5I	GGATG	3 cut(s)	243, 293, 502
BstFNI	CGCG	5 cut(s)	164, 179, 453, 529, 539
BstHHI	GCGC	3 cut(s)	166, 181, 453
BstKTI	GATC	2 cut(s)	465, 679
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	2 cut(s)	462, 676
BstMCI	CGRYCG	1 cut(s)	425
BstMWI	GCNNNNNNNGC	2 cut(s)	288, 352
BstNI	CCWGG	1 cut(s)	141
BstPI	GGTNACC	1 cut(s)	427
BstSCI	CCNGG	3 cut(s)	33, 139, 314
BstSFI	CTRYAG	1 cut(s)	563
BstSLI	GKGCMC	1 cut(s)	140
BstUI	CGCG	5 cut(s)	164, 179, 453, 529, 539
BstV1I	GCAGC	4 cut(s)	58, 178, 239, 306
BstX2I	RGATCY	1 cut(s)	462
BstYI	RGATCY	1 cut(s)	462
BsuI	GTATCC	1 cut(s)	535
BsuRI	GGCC	4 cut(s)	113, 138, 144, 596
BtgI	CCRYGG	1 cut(s)	591
BtrI	CACGTC	1 cut(s)	301
BtsCI	GGATG	3 cut(s)	243, 293, 502
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	3 cut(s)	44, 324, 573
CaiI	CAGNNNCTG	1 cut(s)	571
CfoI	GCGC	3 cut(s)	166, 181, 453
Cfr10I	RCCGGY	2 cut(s)	322, 420
Cfr13I	GGNCC	3 cut(s)	136, 137, 595
CseI	GACGC	2 cut(s)	564, 617
Csp6I	GTAC	2 cut(s)	232, 487
CspAI	ACCGGT	1 cut(s)	420
CviAII	CATG	2 cut(s)	440, 592
CviQI	GTAC	2 cut(s)	232, 487
DpnI	GATC	2 cut(s)	464, 678
DpnII	GATC	2 cut(s)	462, 676
EaeI	YGGCCR	2 cut(s)	111, 142
EciI	GGCGGA	1 cut(s)	38
Ecl136II	GAGCTC	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	591
Eco24I	GRGCYC	2 cut(s)	44, 140
Eco53kI	GAGCTC	1 cut(s)	42
Eco72I	CACGTG	1 cut(s)	373
Eco91I	GGTNACC	1 cut(s)	427
EcoICRI	GAGCTC	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	137
EcoO65I	GGTNACC	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	591
EcoT38I	GRGCYC	2 cut(s)	44, 140
ErhI	CCWWGG	1 cut(s)	591
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	2 cut(s)	443, 595
FaiI	YATR	7 cut(s)	392, 441, 593, 650, 672, 681, 683
FaqI	GGGAC	2 cut(s)	47, 311
FatI	CATG	2 cut(s)	439, 591
FauNDI	CATATG	1 cut(s)	681
Fnu4HI	GCNGC	9 cut(s)	21, 47, 167, 182, 224, 253, 320, 327, 530
FokI	GGATG	3 cut(s)	230, 300, 509
FriOI	GRGCYC	2 cut(s)	44, 140
Fsp4HI	GCNGC	9 cut(s)	21, 47, 167, 182, 224, 253, 320, 327, 530
GlaI	GCGC	3 cut(s)	165, 180, 452
GluI	GCNGC	9 cut(s)	21, 47, 167, 182, 224, 253, 320, 327, 530
GsuI	CTGGAG	1 cut(s)	206
HaeIII	GGCC	4 cut(s)	113, 138, 144, 596
HapII	CCGG	6 cut(s)	35, 247, 315, 323, 421, 503
HgaI	GACGC	2 cut(s)	564, 617
HhaI	GCGC	3 cut(s)	166, 181, 453
Hin1I	GRCGYC	1 cut(s)	575
Hin1II	CATG	2 cut(s)	443, 595
Hin6I	GCGC	3 cut(s)	164, 179, 451
HinP1I	GCGC	3 cut(s)	164, 179, 451
HinfI	GANTC	3 cut(s)	171, 482, 559
HpaII	CCGG	6 cut(s)	35, 247, 315, 323, 421, 503
HphI	GGTGA	6 cut(s)	44, 217, 439, 562, 592, 617
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	4 cut(s)	69, 247, 466, 479
Hpy99I	CGWCG	5 cut(s)	95, 110, 334, 458, 580
HpyAV	CCTTC	2 cut(s)	193, 260
HpyCH4III	ACNGT	8 cut(s)	61, 131, 193, 259, 436, 472, 547, 605
HpyCH4IV	ACGT	4 cut(s)	230, 300, 372, 489
HpyCH4V	TGCA	5 cut(s)	255, 291, 439, 565, 655
HpyF10VI	GCNNNNNNNGC	2 cut(s)	288, 352
HpySE526I	ACGT	4 cut(s)	230, 300, 372, 489
Hsp92I	GRCGYC	1 cut(s)	575
Hsp92II	CATG	2 cut(s)	443, 595
HspAI	GCGC	3 cut(s)	164, 179, 451
Kpn2I	TCCGGA	1 cut(s)	246
KroI	GCCGGC	1 cut(s)	322
KroNI	GCCGGC	1 cut(s)	324
Kzo9I	GATC	2 cut(s)	462, 676
LmnI	GCTCC	4 cut(s)	25, 155, 249, 400
Lsp1109I	GCAGC	4 cut(s)	58, 178, 239, 306
LweI	GCATC	2 cut(s)	58, 278
MaeII	ACGT	4 cut(s)	230, 300, 372, 489
MaeIII	GTNAC	5 cut(s)	373, 427, 580, 599, 605
MalI	GATC	2 cut(s)	464, 678
MboI	GATC	2 cut(s)	462, 676
MboII	GAAGA	1 cut(s)	637
MflI	RGATCY	1 cut(s)	462
MhlI	GDGCHC	4 cut(s)	44, 140, 338, 405
MlsI	TGGCCA	1 cut(s)	144
MluCI	AATT	3 cut(s)	309, 415, 630
MluNI	TGGCCA	1 cut(s)	144
Mox20I	TGGCCA	1 cut(s)	144
MroI	TCCGGA	1 cut(s)	246
MroNI	GCCGGC	1 cut(s)	322
MscI	TGGCCA	1 cut(s)	144
Msp20I	TGGCCA	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	6 cut(s)	35, 247, 315, 323, 421, 503
MspR9I	CCNGG	3 cut(s)	35, 141, 316
MvaI	CCWGG	1 cut(s)	141
MvnI	CGCG	5 cut(s)	164, 179, 453, 529, 539
MwoI	GCNNNNNNNGC	2 cut(s)	288, 352
NaeI	GCCGGC	1 cut(s)	324
NciI	CCSGG	2 cut(s)	35, 316
NcoI	CCATGG	1 cut(s)	591
NdeI	CATATG	1 cut(s)	681
NdeII	GATC	2 cut(s)	462, 676
NgoMIV	GCCGGC	1 cut(s)	322
NlaIII	CATG	2 cut(s)	443, 595
NlaIV	GGNNCC	1 cut(s)	138
NmeAIII	GCCGAG	1 cut(s)	139
NmuCI	GTSAC	5 cut(s)	373, 427, 580, 599, 605
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PdiI	GCCGGC	1 cut(s)	324
PfeI	GAWTC	3 cut(s)	171, 482, 559
Pfl23II	CGTACG	1 cut(s)	486
PflFI	GACNNNGTC	1 cut(s)	79
PinAI	ACCGGT	1 cut(s)	420
PkrI	GCNGC	9 cut(s)	22, 48, 168, 183, 225, 254, 321, 328, 531
PmaCI	CACGTG	1 cut(s)	373
PmlI	CACGTG	1 cut(s)	373
Ppu21I	YACGTR	2 cut(s)	373, 490
Psp124BI	GAGCTC	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	139
PspCI	CACGTG	1 cut(s)	373
PspEI	GGTNACC	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	139
PspLI	CGTACG	1 cut(s)	486
PspN4I	GGNNCC	1 cut(s)	138
PspOMI	GGGCCC	1 cut(s)	136
PspPI	GGNCC	3 cut(s)	136, 137, 595
PstI	CTGCAG	1 cut(s)	567
PstNI	CAGNNNCTG	1 cut(s)	571
PsuI	RGATCY	1 cut(s)	462
PsyI	GACNNNGTC	1 cut(s)	79
RsaI	GTAC	2 cut(s)	233, 488
RsaNI	GTAC	2 cut(s)	232, 487
SacI	GAGCTC	1 cut(s)	44
SatI	GCNGC	9 cut(s)	21, 47, 167, 182, 224, 253, 320, 327, 530
Sau3AI	GATC	2 cut(s)	462, 676
Sau96I	GGNCC	3 cut(s)	136, 137, 595
ScrFI	CCNGG	3 cut(s)	35, 141, 316
SduI	GDGCHC	4 cut(s)	44, 140, 338, 405
SfaNI	GCATC	2 cut(s)	58, 278
SfcI	CTRYAG	1 cut(s)	563
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	3 cut(s)	309, 415, 630
SsiI	CCGC	8 cut(s)	20, 23, 182, 211, 224, 326, 529, 539
SstI	GAGCTC	1 cut(s)	44
StyD4I	CCNGG	3 cut(s)	33, 139, 314
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	8 cut(s)	61, 131, 193, 259, 436, 472, 547, 605
TaiI	ACGT	4 cut(s)	233, 303, 375, 492
TaqI	TCGA	2 cut(s)	90, 216
TasI	AATT	3 cut(s)	309, 415, 630
TauI	GCSGC	5 cut(s)	23, 184, 226, 329, 532
TfiI	GAWTC	3 cut(s)	171, 482, 559
TscAI	CASTG	1 cut(s)	264
TseFI	GTSAC	5 cut(s)	373, 427, 580, 599, 605
TseI	GCWGC	4 cut(s)	46, 166, 252, 319
Tsp45I	GTSAC	5 cut(s)	373, 427, 580, 599, 605
TspDTI	ATGAA	2 cut(s)	232, 637
TspGWI	ACGGA	2 cut(s)	353, 599
TspRI	CASTG	1 cut(s)	264
Tth111I	GACNNNGTC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.