Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0011952

Physical Location & Seq

Genomic Coordinates Forward (+)

3415954 .. 3416574

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g02810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGAGAAAGGCGAGGGCTCAATGGCCGAGCAAGACGCGGCGGAGGAAACCCAGCACCACCTCACCCTCCCTTCCGGTTTGACTCAGGACGAGTTCGACGAGTTGAAGAGTTTCGTAAACGAGTTCCACAAGTATCACGTGGGCCCCGGAAAATGCTCTTCCCTACTCGCGCAACGCGTGCACGCGCCGCCCAACACCGTGTGGTCGGTGGTGCGGCGCTTTGACGAGCCCCAGGCCTACAAGCACTTCATCCGGAGCTGTAAAGTCAAGGAAGGGTTTGAAATGACCGTCGGGTGCACCAGGGACGTCAATGTTATCTCAGGGCTACCGGCTGCCACCAGCACCGAGCGCCTCGACTTACTCGACGAAGATCGCCAGGTCACCGGTTTCAGTATCATCGGGGGCGAGCACCGCCTCAGGAATTACCGGTCTGTCACTACCGTGAATGGGTTTGACCGTGACGGGAGGATCTCGACCGTTGTTTTGGAATCGTACGTCGTCGATGTACCCGAGGGGAATTCCGAGGAGGACACGCGTCTCTTCGCTGATACTGTTGTCAAGTTGAACCTCCAGAAGCTGGCGTCGGTGACGGAAGGGATGGCGGGTGACGGTGGGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009892 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0080163 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701 GO:1905183

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

207

Amino Acids

22.85

Weight (kDa)

5.18

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	59 - 196	3.1e-11	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17870 AT5G46790 AT5G46790
fragaria_vesca	FvH4_5g22060
malus_domestica	MD06G1034000.v1.1 MD16G1274400.v1.1
prunus_persica	Prupe.5G036800_v2.0.a1
pyrus_communis	pycom06g02810 pycom16g24460
rosa_chinensis	RchiOBHm_Chr7g0209681
rosa_laevigata	RLG00000003104
rosa_multiflora	Rmu_sc0002616.1_g000004
rosa_roxburghii	Rroxscaffold_3G00249150
rosa_rugosa	Rorug07G0115400
rosa_samantha	Rh7AG249100 Rh7BG243000 Rh7CG265000 Rh7DG254900
rosa_wichuraiana	Rw7G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	309
AccB7I	CCANNNNNTGG	1 cut(s)	577
AccII	CGCG	5 cut(s)	38, 170, 177, 185, 535
AccIII	TCCGGA	1 cut(s)	252
AciI	CCGC	6 cut(s)	38, 41, 188, 214, 412, 602
AclWI	GGATC	1 cut(s)	476
AcoI	YGGCCR	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	517
AcvI	CACGTG	1 cut(s)	139
AcyI	GRCGYC	2 cut(s)	306, 581
AdeI	CACNNNGTG	1 cut(s)	201
AfaI	GTAC	2 cut(s)	494, 507
AfiI	CCNNNNNNNGG	2 cut(s)	447, 577
AflIII	ACRYGT	2 cut(s)	175, 533
AgeI	ACCGGT	2 cut(s)	383, 426
AgsI	TTSAA	3 cut(s)	106, 281, 565
AjnI	CCWGG	3 cut(s)	231, 299, 375
AleI	CACNNNNGTG	1 cut(s)	440
AluBI	AGCT	2 cut(s)	258, 577
AluI	AGCT	2 cut(s)	258, 577
Alw21I	GWGCWC	3 cut(s)	183, 299, 411
Alw26I	GTCTC	1 cut(s)	542
Alw44I	GTGCAC	2 cut(s)	179, 295
AlwI	GGATC	1 cut(s)	476
AlwNI	CAGNNNCTG	1 cut(s)	577
Ama87I	CYCGRG	1 cut(s)	509
Aor13HI	TCCGGA	1 cut(s)	252
AoxI	GGCC	3 cut(s)	24, 142, 234
ApaI	GGGCCC	1 cut(s)	146
ApaLI	GTGCAC	2 cut(s)	179, 295
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	1 cut(s)	517
ArsI	GACNNNNNNTTYG	2 cut(s)	466, 498
AsiGI	ACCGGT	2 cut(s)	383, 426
Asp700I	GAANNNNTTC	1 cut(s)	110
AspLEI	GCGC	5 cut(s)	172, 187, 219, 351, 618
AspS9I	GGNCC	2 cut(s)	142, 143
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	4 cut(s)	55, 373, 598, 617
AvaI	CYCGRG	1 cut(s)	509
AxyI	CCTNAGG	1 cut(s)	416
BaeGI	GKGCMC	3 cut(s)	146, 183, 299
BaeI	ACNNNNGTAYC	2 cut(s)	540, 573
BanII	GRGCYC	3 cut(s)	20, 146, 231
BbrPI	CACGTG	1 cut(s)	139
Bbv12I	GWGCWC	3 cut(s)	183, 299, 411
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	1 cut(s)	592
BciT130I	CCWGG	3 cut(s)	233, 301, 377
BcnI	CCSGG	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	542
BfoI	RGCGCY	3 cut(s)	220, 352, 619
BisI	GCNGC	4 cut(s)	39, 188, 215, 333
BlsI	GCNGC	4 cut(s)	40, 189, 216, 334
Bme1390I	CCNGG	4 cut(s)	147, 233, 301, 377
BmeT110I	CYCGRG	1 cut(s)	509
BmgT120I	GGNCC	2 cut(s)	142, 143
BmiI	GGNNCC	2 cut(s)	144, 145
BmrFI	CCNGG	4 cut(s)	147, 233, 301, 377
BoxI	GACNNNNGTC	1 cut(s)	534
BpmI	CTGGAG	1 cut(s)	554
BpuMI	CCSGG	1 cut(s)	147
BsaAI	YACGTR	1 cut(s)	139
BsaHI	GRCGYC	2 cut(s)	306, 581
BsaJI	CCNNGG	5 cut(s)	145, 231, 300, 510, 522
BsaWI	WCCGGW	4 cut(s)	74, 252, 383, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	447, 577
Bse118I	RCCGGY	3 cut(s)	328, 383, 426
Bse21I	CCTNAGG	1 cut(s)	416
BseAI	TCCGGA	1 cut(s)	252
BseBI	CCWGG	3 cut(s)	233, 301, 377
BseDI	CCNNGG	5 cut(s)	145, 231, 300, 510, 522
BseGI	GGATG	2 cut(s)	249, 603
BseLI	CCNNNNNNNGG	2 cut(s)	447, 577
BseMII	CTCAG	3 cut(s)	98, 333, 430
BseRI	GAGGAG	1 cut(s)	539
BseSI	GKGCMC	3 cut(s)	146, 183, 299
BseXI	GCAGC	1 cut(s)	319
BseYI	CCCAGC	1 cut(s)	51
Bsh1236I	CGCG	5 cut(s)	38, 170, 177, 185, 535
Bsh1285I	CGRYCG	1 cut(s)	477
BshFI	GGCC	3 cut(s)	26, 144, 236
BshTI	ACCGGT	2 cut(s)	383, 426
BsiEI	CGRYCG	1 cut(s)	477
BsiHKAI	GWGCWC	3 cut(s)	183, 299, 411
BsiHKCI	CYCGRG	1 cut(s)	509
BsiSI	CCGG	6 cut(s)	75, 147, 253, 329, 384, 427
BsiWI	CGTACG	1 cut(s)	492
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	2 cut(s)	447, 577
BsmAI	GTCTC	1 cut(s)	542
BsmBI	CGTCTC	1 cut(s)	542
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	3 cut(s)	26, 144, 236
BsoBI	CYCGRG	1 cut(s)	509
Bsp120I	GGGCCC	1 cut(s)	142
Bsp1286I	GDGCHC	6 cut(s)	20, 146, 183, 231, 299, 411
Bsp13I	TCCGGA	1 cut(s)	252
Bsp143I	GATC	2 cut(s)	370, 468
BspACI	CCGC	6 cut(s)	38, 41, 188, 214, 412, 602
BspANI	GGCC	3 cut(s)	26, 144, 236
BspCNI	CTCAG	3 cut(s)	97, 332, 429
BspEI	TCCGGA	1 cut(s)	252
BspFNI	CGCG	5 cut(s)	38, 170, 177, 185, 535
BspLI	GGNNCC	2 cut(s)	144, 145
BspPI	GGATC	1 cut(s)	476
BspQI	GCTCTTC	1 cut(s)	163
BsrFI	RCCGGY	3 cut(s)	328, 383, 426
BssAI	RCCGGY	3 cut(s)	328, 383, 426
BssECI	CCNNGG	5 cut(s)	145, 231, 300, 510, 522
BssMI	GATC	2 cut(s)	370, 468
BssNI	GRCGYC	2 cut(s)	306, 581
Bst2UI	CCWGG	3 cut(s)	233, 301, 377
Bst4CI	ACNGT	7 cut(s)	199, 289, 442, 458, 478, 553, 611
Bst6I	CTCTTC	3 cut(s)	101, 163, 545
BstACI	GRCGYC	2 cut(s)	306, 581
BstAPI	GCANNNNNTGC	1 cut(s)	178
BstBAI	YACGTR	1 cut(s)	139
BstC8I	GCNNGC	4 cut(s)	179, 183, 407, 579
BstDEI	CTNAG	3 cut(s)	84, 319, 416
BstEII	GGTNACC	1 cut(s)	379
BstF5I	GGATG	2 cut(s)	249, 603
BstFNI	CGCG	5 cut(s)	38, 170, 177, 185, 535
BstH2I	RGCGCY	3 cut(s)	220, 352, 619
BstHHI	GCGC	5 cut(s)	172, 187, 219, 351, 618
BstKTI	GATC	2 cut(s)	373, 471
BstMAI	GTCTC	1 cut(s)	542
BstMBI	GATC	2 cut(s)	370, 468
BstMCI	CGRYCG	1 cut(s)	477
BstMWI	GCNNNNNNNGC	4 cut(s)	178, 187, 348, 411
BstNI	CCWGG	3 cut(s)	233, 301, 377
BstPAI	GACNNNNGTC	1 cut(s)	534
BstPI	GGTNACC	1 cut(s)	379
BstSCI	CCNGG	4 cut(s)	145, 231, 299, 375
BstSLI	GKGCMC	3 cut(s)	146, 183, 299
BstUI	CGCG	5 cut(s)	38, 170, 177, 185, 535
BstV1I	GCAGC	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	468
BstYI	RGATCY	1 cut(s)	468
Bsu36I	CCTNAGG	1 cut(s)	416
BsuRI	GGCC	3 cut(s)	26, 144, 236
BtsCI	GGATG	2 cut(s)	249, 603
Cac8I	GCNNGC	4 cut(s)	179, 183, 407, 579
CaiI	CAGNNNCTG	1 cut(s)	577
CfoI	GCGC	5 cut(s)	172, 187, 219, 351, 618
Cfr10I	RCCGGY	3 cut(s)	328, 383, 426
Cfr13I	GGNCC	2 cut(s)	142, 143
CseI	GACGC	3 cut(s)	44, 524, 570
Csp6I	GTAC	2 cut(s)	493, 506
CspAI	ACCGGT	2 cut(s)	383, 426
CviJI	RGCY	9 cut(s)	18, 26, 144, 229, 236, 258, 325, 332, 577
CviKI_1	RGCY	9 cut(s)	18, 26, 144, 229, 236, 258, 325, 332, 577
CviQI	GTAC	2 cut(s)	493, 506
DdeI	CTNAG	3 cut(s)	84, 319, 416
DpnI	GATC	2 cut(s)	372, 470
DpnII	GATC	2 cut(s)	370, 468
DraIII	CACNNNGTG	1 cut(s)	201
EaeI	YGGCCR	1 cut(s)	24
Eam1104I	CTCTTC	3 cut(s)	101, 163, 545
EarI	CTCTTC	3 cut(s)	101, 163, 545
EciI	GGCGGA	1 cut(s)	56
Eco147I	AGGCCT	1 cut(s)	236
Eco24I	GRGCYC	3 cut(s)	20, 146, 231
Eco72I	CACGTG	1 cut(s)	139
Eco81I	CCTNAGG	1 cut(s)	416
Eco88I	CYCGRG	1 cut(s)	509
Eco91I	GGTNACC	1 cut(s)	379
EcoO109I	RGGNCCY	1 cut(s)	143
EcoO65I	GGTNACC	1 cut(s)	379
EcoRI	GAATTC	1 cut(s)	517
EcoRII	CCWGG	3 cut(s)	231, 299, 375
EcoT38I	GRGCYC	3 cut(s)	20, 146, 231
Esp3I	CGTCTC	1 cut(s)	542
FaqI	GGGAC	1 cut(s)	317
FauI	CCCGC	1 cut(s)	595
Fnu4HI	GCNGC	4 cut(s)	39, 188, 215, 333
FokI	GGATG	2 cut(s)	236, 610
FriOI	GRGCYC	3 cut(s)	20, 146, 231
Fsp4HI	GCNGC	4 cut(s)	39, 188, 215, 333
GlaI	GCGC	5 cut(s)	171, 186, 218, 350, 617
GluI	GCNGC	4 cut(s)	39, 188, 215, 333
GsaI	CCCAGC	1 cut(s)	55
GsuI	CTGGAG	1 cut(s)	554
HaeII	RGCGCY	3 cut(s)	220, 352, 619
HaeIII	GGCC	3 cut(s)	26, 144, 236
HapII	CCGG	6 cut(s)	75, 147, 253, 329, 384, 427
HgaI	GACGC	3 cut(s)	44, 524, 570
HhaI	GCGC	5 cut(s)	172, 187, 219, 351, 618
Hin1I	GRCGYC	2 cut(s)	306, 581
Hin6I	GCGC	5 cut(s)	170, 185, 217, 349, 616
HinP1I	GCGC	5 cut(s)	170, 185, 217, 349, 616
HinfI	GANTC	2 cut(s)	82, 488
HpaII	CCGG	6 cut(s)	75, 147, 253, 329, 384, 427
HphI	GGTGA	4 cut(s)	55, 373, 598, 617
Hpy166II	GTNNAC	3 cut(s)	118, 181, 297
Hpy188I	TCNGA	1 cut(s)	523
Hpy188III	TCNNGA	5 cut(s)	86, 253, 418, 472, 571
Hpy8I	GTNNAC	3 cut(s)	118, 181, 297
Hpy99I	CGWCG	6 cut(s)	101, 293, 368, 500, 503, 586
HpyAV	CCTTC	3 cut(s)	81, 266, 587
HpyCH4III	ACNGT	7 cut(s)	199, 289, 442, 458, 478, 553, 611
HpyCH4IV	ACGT	3 cut(s)	138, 306, 495
HpyCH4V	TGCA	2 cut(s)	181, 297
HpyF10VI	GCNNNNNNNGC	4 cut(s)	178, 187, 348, 411
HpyF3I	CTNAG	3 cut(s)	84, 319, 416
HpySE526I	ACGT	3 cut(s)	138, 306, 495
Hsp92I	GRCGYC	2 cut(s)	306, 581
HspAI	GCGC	5 cut(s)	170, 185, 217, 349, 616
Kpn2I	TCCGGA	1 cut(s)	252
Kzo9I	GATC	2 cut(s)	370, 468
LguI	GCTCTTC	1 cut(s)	163
LmnI	GCTCC	1 cut(s)	255
Lsp1109I	GCAGC	1 cut(s)	319
MaeII	ACGT	3 cut(s)	138, 306, 495
MaeIII	GTNAC	5 cut(s)	379, 433, 458, 586, 605
MalI	GATC	2 cut(s)	372, 470
MboI	GATC	2 cut(s)	370, 468
MboII	GAAGA	4 cut(s)	118, 150, 380, 532
MflI	RGATCY	1 cut(s)	468
MhlI	GDGCHC	6 cut(s)	20, 146, 183, 231, 299, 411
MluCI	AATT	2 cut(s)	421, 517
MluI	ACGCGT	2 cut(s)	175, 533
MlyI	GAGTC	1 cut(s)	76
MroI	TCCGGA	1 cut(s)	252
MroXI	GAANNNNTTC	1 cut(s)	110
MslI	CAYNNNNRTG	1 cut(s)	440
MspI	CCGG	6 cut(s)	75, 147, 253, 329, 384, 427
MspR9I	CCNGG	4 cut(s)	147, 233, 301, 377
MvaI	CCWGG	3 cut(s)	233, 301, 377
MvnI	CGCG	5 cut(s)	38, 170, 177, 185, 535
MwoI	GCNNNNNNNGC	4 cut(s)	178, 187, 348, 411
NciI	CCSGG	1 cut(s)	147
NdeII	GATC	2 cut(s)	370, 468
NlaIV	GGNNCC	2 cut(s)	144, 145
NmeAIII	GCCGAG	1 cut(s)	52
NmuCI	GTSAC	5 cut(s)	379, 433, 458, 586, 605
OliI	CACNNNNGTG	1 cut(s)	440
PceI	AGGCCT	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	163
PcsI	WCGNNNNNNNCGW	4 cut(s)	96, 174, 360, 507
PdmI	GAANNNNTTC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	488
Pfl23II	CGTACG	1 cut(s)	492
PflMI	CCANNNNNTGG	1 cut(s)	577
PinAI	ACCGGT	2 cut(s)	383, 426
PkrI	GCNGC	4 cut(s)	40, 189, 216, 334
PleI	GAGTC	1 cut(s)	76
PmaCI	CACGTG	1 cut(s)	139
PmlI	CACGTG	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	76
Ppu21I	YACGTR	1 cut(s)	139
PshAI	GACNNNNGTC	1 cut(s)	534
Psp6I	CCWGG	3 cut(s)	231, 299, 375
PspCI	CACGTG	1 cut(s)	139
PspEI	GGTNACC	1 cut(s)	379
PspFI	CCCAGC	1 cut(s)	51
PspGI	CCWGG	3 cut(s)	231, 299, 375
PspLI	CGTACG	1 cut(s)	492
PspN4I	GGNNCC	2 cut(s)	144, 145
PspOMI	GGGCCC	1 cut(s)	142
PspPI	GGNCC	2 cut(s)	142, 143
PstNI	CAGNNNCTG	1 cut(s)	577
PsuI	RGATCY	1 cut(s)	468
RsaI	GTAC	2 cut(s)	494, 507
RsaNI	GTAC	2 cut(s)	493, 506
RseI	CAYNNNNRTG	1 cut(s)	440
SapI	GCTCTTC	1 cut(s)	163
SatI	GCNGC	4 cut(s)	39, 188, 215, 333
Sau3AI	GATC	2 cut(s)	370, 468
Sau96I	GGNCC	2 cut(s)	142, 143
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	4 cut(s)	147, 233, 301, 377
SduI	GDGCHC	6 cut(s)	20, 146, 183, 231, 299, 411
SetI	ASST	8 cut(s)	63, 141, 260, 309, 381, 498, 570, 579
SmiMI	CAYNNNNRTG	1 cut(s)	440
Sse9I	AATT	2 cut(s)	421, 517
SseBI	AGGCCT	1 cut(s)	236
SsiI	CCGC	6 cut(s)	38, 41, 188, 214, 412, 602
StuI	AGGCCT	1 cut(s)	236
StyD4I	CCNGG	4 cut(s)	145, 231, 299, 375
TaaI	ACNGT	7 cut(s)	199, 289, 442, 458, 478, 553, 611
TaiI	ACGT	3 cut(s)	141, 309, 498
TaqI	TCGA	5 cut(s)	96, 354, 363, 473, 501
TasI	AATT	2 cut(s)	421, 517
TauI	GCSGC	3 cut(s)	41, 190, 217
TfiI	GAWTC	1 cut(s)	488
TseFI	GTSAC	5 cut(s)	379, 433, 458, 586, 605
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	5 cut(s)	379, 433, 458, 586, 605
TspDTI	ATGAA	1 cut(s)	238
TspGWI	ACGGA	1 cut(s)	605
Van91I	CCANNNNNTGG	1 cut(s)	577
VneI	GTGCAC	2 cut(s)	179, 295
XapI	RAATTY	1 cut(s)	517
XmnI	GAANNNNTTC	1 cut(s)	110
ZraI	GACGTC	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.