Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0011952

Physical Location & Seq

Genomic Coordinates Forward (+)

21637932 .. 21638955

Gene Structure 1024 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG243000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGAGAAAGCAGCAGCAGCAGAGGGATCCATGGCGGCCGAGCGCGACCCGGAGAGGTCGCAGCACCACCTCACAGTCCCCTCCGGGTTGACTCAGTCCGAGTTTGAGGAGTTGAAGCCCTGCGTGGCCGAGTTCCACACGTACCGGGTAGGCCCGGAGTATTGCTCCTCCCTACTGGCGCAGCGAGTCCACGCGCCGCTGGAGACGGTGTGGAGGGTGGTGCGGCGGTTCGACCGGCCGCAGACGTACAAGCACTTCATCCGGAGCTGCACGGTCAGAGAAGGGATTGTAATGAGCGTGGGATGCACGAGGGAGGTGAATGTAATTTCGGGGCTACCGGCGGCGACGAGCACGGAGAGGCTGGACTTGCTGGACGATGACCGACACGTCACCGGGTTCAGTATTACAGGGGGAGAGCACCGGCTGAGGAATTACCGGTCGGTGACCACCGTGCATGGGTTCGAGCGCGACGGGAGGATCTGCACGGTCGTTTTGGAATCGTATGTGGTGGATGTGCCGGAGGGGAATAGCGAGGAGGAAACGCGGCTGTTCGCCGATACGGTGGTCAGGTTGAATCTGCAGAAGCTGGCGTCGGTCACGGAAGCCATGGCCCGTGACGGTGACGCTAATTTCCAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009892 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0080163 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701 GO:1905183

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

213

Amino Acids

23.88

Weight (kDa)

5.64

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	62 - 200	3.9e-13	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17870 AT5G46790 AT5G46790
fragaria_vesca	FvH4_5g22060
malus_domestica	MD06G1034000.v1.1 MD16G1274400.v1.1
prunus_persica	Prupe.5G036800_v2.0.a1
pyrus_communis	pycom06g02810 pycom16g24460
rosa_chinensis	RchiOBHm_Chr7g0209681
rosa_laevigata	RLG00000003104
rosa_multiflora	Rmu_sc0002616.1_g000004
rosa_roxburghii	Rroxscaffold_3G00249150
rosa_rugosa	Rorug07G0115400
rosa_samantha	Rh7AG249100 Rh7BG243000 Rh7CG265000 Rh7DG254900
rosa_wichuraiana	Rw7G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	386
AccII	CGCG	4 cut(s)	45, 194, 468, 544
AccIII	TCCGGA	1 cut(s)	261
AciI	CCGC	7 cut(s)	35, 197, 223, 226, 239, 341, 544
AclWI	GGATC	3 cut(s)	21, 34, 485
AcoI	YGGCCR	3 cut(s)	36, 126, 236
AcyI	GRCGYC	1 cut(s)	590
AfaI	GTAC	2 cut(s)	143, 248
AfiI	CCNNNNNNNGG	1 cut(s)	456
AflIII	ACRYGT	2 cut(s)	138, 385
AgeI	ACCGGT	1 cut(s)	435
AgsI	TTSAA	2 cut(s)	115, 574
AjiI	CACGTC	1 cut(s)	388
AjnI	CCWGG	1 cut(s)	633
AluBI	AGCT	2 cut(s)	267, 586
AluI	AGCT	2 cut(s)	267, 586
Alw21I	GWGCWC	2 cut(s)	353, 420
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	3 cut(s)	21, 34, 485
AlwNI	CAGNNNCTG	1 cut(s)	586
Aor13HI	TCCGGA	1 cut(s)	261
AoxI	GGCC	5 cut(s)	36, 126, 151, 236, 609
ApeKI	GCWGC	6 cut(s)	11, 14, 17, 61, 181, 267
AsiGI	ACCGGT	1 cut(s)	435
AspLEI	GCGC	4 cut(s)	45, 181, 196, 468
AspS9I	GGNCC	2 cut(s)	152, 610
AsuC2I	CCSGG	5 cut(s)	50, 85, 146, 155, 394
AsuHPI	GGTGA	4 cut(s)	328, 382, 454, 632
BaeI	ACNNNNGTAYC	2 cut(s)	549, 582
BamHI	GGATCC	1 cut(s)	26
BarI	GAAGNNNNNNTAC	2 cut(s)	239, 271
BauI	CACGAG	1 cut(s)	307
Bbv12I	GWGCWC	2 cut(s)	353, 420
BbvCI	CCTCAGC	1 cut(s)	425
BbvI	GCAGC	6 cut(s)	23, 26, 29, 73, 193, 254
BciT130I	CCWGG	1 cut(s)	635
BcnI	CCSGG	5 cut(s)	50, 85, 146, 155, 394
BcoDI	GTCTC	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	578
Bme1390I	CCNGG	6 cut(s)	50, 85, 146, 155, 394, 635
BmgBI	CACGTC	1 cut(s)	388
BmgT120I	GGNCC	2 cut(s)	152, 610
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	6 cut(s)	50, 85, 146, 155, 394, 635
BmsI	GCATC	1 cut(s)	293
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
BpmI	CTGGAG	1 cut(s)	221
Bpu10I	CCTNAGC	1 cut(s)	425
BpuMI	CCSGG	5 cut(s)	50, 85, 146, 155, 394
BsaAI	YACGTR	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	590
BsaJI	CCNNGG	2 cut(s)	30, 606
BsaWI	WCCGGW	2 cut(s)	261, 435
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	456
Bse118I	RCCGGY	4 cut(s)	234, 337, 420, 435
Bse1I	ACTGG	1 cut(s)	180
BseAI	TCCGGA	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	635
BseDI	CCNNGG	2 cut(s)	30, 606
BseGI	GGATG	3 cut(s)	258, 308, 517
BseLI	CCNNNNNNNGG	1 cut(s)	456
BseMII	CTCAG	2 cut(s)	107, 416
BseNI	ACTGG	1 cut(s)	180
BseRI	GAGGAG	3 cut(s)	122, 157, 548
BseX3I	CGGCCG	2 cut(s)	36, 236
BseXI	GCAGC	6 cut(s)	23, 26, 29, 73, 193, 254
BsgI	GTGCAG	2 cut(s)	253, 466
Bsh1236I	CGCG	4 cut(s)	45, 194, 468, 544
Bsh1285I	CGRYCG	5 cut(s)	39, 235, 239, 440, 489
BshFI	GGCC	5 cut(s)	38, 128, 153, 238, 611
BshTI	ACCGGT	1 cut(s)	435
BsiEI	CGRYCG	5 cut(s)	39, 235, 239, 440, 489
BsiHKAI	GWGCWC	2 cut(s)	353, 420
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	456
BsmAI	GTCTC	1 cut(s)	197
BsmBI	CGTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	5 cut(s)	38, 128, 153, 238, 611
Bsp1286I	GDGCHC	2 cut(s)	353, 420
Bsp13I	TCCGGA	1 cut(s)	261
Bsp143I	GATC	2 cut(s)	26, 477
Bsp19I	CCATGG	2 cut(s)	30, 606
BspACI	CCGC	7 cut(s)	35, 197, 223, 226, 239, 341, 544
BspANI	GGCC	5 cut(s)	38, 128, 153, 238, 611
BspCNI	CTCAG	2 cut(s)	106, 417
BspEI	TCCGGA	1 cut(s)	261
BspFNI	CGCG	4 cut(s)	45, 194, 468, 544
BspLI	GGNNCC	1 cut(s)	28
BspMAI	CTGCAG	1 cut(s)	582
BspPI	GGATC	3 cut(s)	21, 34, 485
BsrFI	RCCGGY	4 cut(s)	234, 337, 420, 435
BsrI	ACTGG	1 cut(s)	180
BssAI	RCCGGY	4 cut(s)	234, 337, 420, 435
BssECI	CCNNGG	2 cut(s)	30, 606
BssMI	GATC	2 cut(s)	26, 477
BssNI	GRCGYC	1 cut(s)	590
BssSI	CACGAG	1 cut(s)	307
BssT1I	CCWWGG	2 cut(s)	30, 606
Bst2BI	CACGAG	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	635
Bst4CI	ACNGT	7 cut(s)	76, 208, 274, 451, 487, 562, 620
BstACI	GRCGYC	1 cut(s)	590
BstBAI	YACGTR	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	588
BstDEI	CTNAG	2 cut(s)	93, 425
BstDSI	CCRYGG	2 cut(s)	30, 606
BstEII	GGTNACC	1 cut(s)	442
BstF5I	GGATG	3 cut(s)	258, 308, 517
BstFNI	CGCG	4 cut(s)	45, 194, 468, 544
BstHHI	GCGC	4 cut(s)	45, 181, 196, 468
BstKTI	GATC	2 cut(s)	29, 480
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	2 cut(s)	26, 477
BstMCI	CGRYCG	5 cut(s)	39, 235, 239, 440, 489
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 303, 367
BstNI	CCWGG	1 cut(s)	635
BstPI	GGTNACC	1 cut(s)	442
BstSCI	CCNGG	6 cut(s)	48, 83, 144, 153, 392, 633
BstSFI	CTRYAG	1 cut(s)	578
BstUI	CGCG	4 cut(s)	45, 194, 468, 544
BstV1I	GCAGC	6 cut(s)	23, 26, 29, 73, 193, 254
BstX2I	RGATCY	2 cut(s)	26, 477
BstYI	RGATCY	2 cut(s)	26, 477
BstZI	CGGCCG	2 cut(s)	36, 236
BsuRI	GGCC	5 cut(s)	38, 128, 153, 238, 611
BtgI	CCRYGG	2 cut(s)	30, 606
BtrI	CACGTC	1 cut(s)	388
BtsCI	GGATG	3 cut(s)	258, 308, 517
Cac8I	GCNNGC	1 cut(s)	588
CaiI	CAGNNNCTG	1 cut(s)	586
CfoI	GCGC	4 cut(s)	45, 181, 196, 468
Cfr10I	RCCGGY	4 cut(s)	234, 337, 420, 435
Cfr13I	GGNCC	2 cut(s)	152, 610
CseI	GACGC	2 cut(s)	579, 632
Csp6I	GTAC	2 cut(s)	142, 247
CspAI	ACCGGT	1 cut(s)	435
CviAII	CATG	3 cut(s)	31, 455, 607
CviQI	GTAC	2 cut(s)	142, 247
DdeI	CTNAG	2 cut(s)	93, 425
DpnI	GATC	2 cut(s)	28, 479
DpnII	GATC	2 cut(s)	26, 477
DrdI	GACNNNNNNGTC	1 cut(s)	386
DseDI	GACNNNNNNGTC	1 cut(s)	386
EaeI	YGGCCR	3 cut(s)	36, 126, 236
EagI	CGGCCG	2 cut(s)	36, 236
EclXI	CGGCCG	2 cut(s)	36, 236
Eco130I	CCWWGG	2 cut(s)	30, 606
Eco52I	CGGCCG	2 cut(s)	36, 236
Eco91I	GGTNACC	1 cut(s)	442
EcoO65I	GGTNACC	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	633
EcoT14I	CCWWGG	2 cut(s)	30, 606
ErhI	CCWWGG	2 cut(s)	30, 606
Esp3I	CGTCTC	1 cut(s)	197
FaeI	CATG	3 cut(s)	34, 458, 610
FaiI	YATR	4 cut(s)	32, 456, 504, 608
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	3 cut(s)	30, 454, 606
FokI	GGATG	3 cut(s)	245, 315, 524
GlaI	GCGC	4 cut(s)	44, 180, 195, 467
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	5 cut(s)	38, 128, 153, 238, 611
HgaI	GACGC	2 cut(s)	579, 632
HhaI	GCGC	4 cut(s)	45, 181, 196, 468
Hin1I	GRCGYC	1 cut(s)	590
Hin1II	CATG	3 cut(s)	34, 458, 610
Hin6I	GCGC	4 cut(s)	43, 179, 194, 466
HinP1I	GCGC	4 cut(s)	43, 179, 194, 466
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	4 cut(s)	91, 186, 497, 574
HphI	GGTGA	4 cut(s)	328, 382, 454, 632
Hpy166II	GTNNAC	2 cut(s)	90, 190
Hpy188I	TCNGA	3 cut(s)	100, 278, 641
Hpy188III	TCNNGA	1 cut(s)	262
Hpy8I	GTNNAC	2 cut(s)	90, 190
Hpy99I	CGWCG	3 cut(s)	349, 473, 595
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	7 cut(s)	76, 208, 274, 451, 487, 562, 620
HpyCH4IV	ACGT	3 cut(s)	140, 245, 387
HpyCH4V	TGCA	5 cut(s)	270, 306, 454, 483, 580
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 303, 367
HpyF3I	CTNAG	2 cut(s)	93, 425
HpySE526I	ACGT	3 cut(s)	140, 245, 387
Hsp92I	GRCGYC	1 cut(s)	590
Hsp92II	CATG	3 cut(s)	34, 458, 610
HspAI	GCGC	4 cut(s)	43, 179, 194, 466
Kpn2I	TCCGGA	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	26, 477
LmnI	GCTCC	2 cut(s)	170, 264
Lsp1109I	GCAGC	6 cut(s)	23, 26, 29, 73, 193, 254
LweI	GCATC	1 cut(s)	293
MaeII	ACGT	3 cut(s)	140, 245, 387
MaeIII	GTNAC	5 cut(s)	388, 442, 595, 614, 620
MalI	GATC	2 cut(s)	28, 479
MboI	GATC	2 cut(s)	26, 477
MflI	RGATCY	2 cut(s)	26, 477
MhlI	GDGCHC	2 cut(s)	353, 420
MluCI	AATT	3 cut(s)	324, 430, 628
MlyI	GAGTC	2 cut(s)	85, 195
MroI	TCCGGA	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	199
MspR9I	CCNGG	6 cut(s)	50, 85, 146, 155, 394, 635
MvaI	CCWGG	1 cut(s)	635
MvnI	CGCG	4 cut(s)	45, 194, 468, 544
MwoI	GCNNNNNNNGC	3 cut(s)	17, 303, 367
NciI	CCSGG	5 cut(s)	50, 85, 146, 155, 394
NcoI	CCATGG	2 cut(s)	30, 606
NdeII	GATC	2 cut(s)	26, 477
NlaIII	CATG	3 cut(s)	34, 458, 610
NlaIV	GGNNCC	1 cut(s)	28
NmeAIII	GCCGAG	2 cut(s)	64, 154
NmuCI	GTSAC	5 cut(s)	388, 442, 595, 614, 620
PfeI	GAWTC	2 cut(s)	497, 574
PflFI	GACNNNGTC	1 cut(s)	94
PinAI	ACCGGT	1 cut(s)	435
PleI	GAGTC	2 cut(s)	85, 194
PpsI	GAGTC	2 cut(s)	85, 194
Ppu21I	YACGTR	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	633
PspEI	GGTNACC	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	633
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	2 cut(s)	152, 610
PstI	CTGCAG	1 cut(s)	582
PstNI	CAGNNNCTG	1 cut(s)	586
PsuI	RGATCY	2 cut(s)	26, 477
PsyI	GACNNNGTC	1 cut(s)	94
RsaI	GTAC	2 cut(s)	143, 248
RsaNI	GTAC	2 cut(s)	142, 247
Sau3AI	GATC	2 cut(s)	26, 477
Sau96I	GGNCC	2 cut(s)	152, 610
SchI	GAGTC	2 cut(s)	85, 195
ScrFI	CCNGG	6 cut(s)	50, 85, 146, 155, 394, 635
SduI	GDGCHC	2 cut(s)	353, 420
SfaNI	GCATC	1 cut(s)	293
SfcI	CTRYAG	1 cut(s)	578
Sse9I	AATT	3 cut(s)	324, 430, 628
SsiI	CCGC	7 cut(s)	35, 197, 223, 226, 239, 341, 544
StyD4I	CCNGG	6 cut(s)	48, 83, 144, 153, 392, 633
StyI	CCWWGG	2 cut(s)	30, 606
TaaI	ACNGT	7 cut(s)	76, 208, 274, 451, 487, 562, 620
TaiI	ACGT	3 cut(s)	143, 248, 390
TaqI	TCGA	2 cut(s)	231, 462
TaqII	GACCGA	2 cut(s)	396, 583
TasI	AATT	3 cut(s)	324, 430, 628
TauI	GCSGC	6 cut(s)	38, 199, 226, 241, 344, 547
TfiI	GAWTC	2 cut(s)	497, 574
TseFI	GTSAC	5 cut(s)	388, 442, 595, 614, 620
TseI	GCWGC	6 cut(s)	11, 14, 17, 61, 181, 267
Tsp45I	GTSAC	5 cut(s)	388, 442, 595, 614, 620
TspDTI	ATGAA	1 cut(s)	247
TspGWI	ACGGA	2 cut(s)	368, 614
Tth111I	GACNNNGTC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.