AT4G18110

RING-H2 zinc finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0018729
Physical Location & Seq
Reverse (-)
10037077 .. 10037718
642 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G18110.1

Sequence Viewer

Length: 642 bp
ATGGAGGGCACATCAACATGGATTCTAAACTATGAATCTAAGACTCACATCGTCGATCACAAAAATTCAGGATCCTTCTCAATAAGTATCCAAGGAATTGAGCGGATTCTTATCCGGAGTCCTAGCGGTCGTGAAACTTTGGCTCAACAAAAATCGCTAGGAAAGAAGAATGCAACAGTAAGAATCGCATCCGAGATCCCACCTGTTTTCCTCACCGGAGAAGAAATATGCAGTATATTTGTGGCTAACGTGTTGTCCAAGTCAAAGATCAACAAGTGGATTCAGCAAAGTATTGTTCCTAAAATCTGCGAAGACCTGATTGATATAAGACGCCACCTTGAAGAAGAAGAAAAAGATGGTTTCTTGGTTGAAGTTGAAGTTGTTCTAGAAACGTTGTATAGTGATTGGTTAAGAGTCAATGATTATGACTCTCAAGGTTGTCTAATACCAATAGAAGAAGAGTGCATAATATGTCTAGAAGAGTTAGCATCATCAGGTAGTGAGAGGAGGATCATGAAGTTGCTTTGTTCTCACAGTTTTCATAAAGATTGTATTCTCCCCTGGCTACGCTGCAAGCGATCATGTCCTACTTGTCGTGACGACATCCACAATCGTCGAGCAGAAGAAGACCACCATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

213

Amino Acids

24.46

Weight (kDa)

5.55

Isoelectric Point (pI)

74.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 145 - 199 7.1e-11 RING-H2 zinc finger domain
zf-RING_2 PF13639 154 - 199 2.1e-11 Ring finger domain
zf-RING_11 PF17123 154 - 185 4e-08 RING-like zinc finger
zf-C3HC4_2 PF13923 154 - 198 2.7e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 155 - 198 2.8e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018729)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05350 AT4G12140 AT4G12150 AT4G12190 AT4G12210 AT4G12220 AT4G18110
rosa_chinensis RchiOBHm_Chr4g0400421 RchiOBHm_Chr4g0400491

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 103
AccIII TCCGGA 1 cut(s) 114
AciI CCGC 2 cut(s) 103, 126
AclI AACGTT 1 cut(s) 392
AclWI GGATC 4 cut(s) 66, 79, 190, 518
AcsI RAATTY 1 cut(s) 64
AcyI GRCGYC 1 cut(s) 331
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 3 cut(s) 341, 371, 377
AjnI CCWGG 1 cut(s) 560
AlwI GGATC 4 cut(s) 66, 79, 190, 518
Aor13HI TCCGGA 1 cut(s) 114
ApeKI GCWGC 1 cut(s) 570
ApoI RAATTY 1 cut(s) 64
Asp700I GAANNNNTTC 1 cut(s) 381
AsuHPI GGTGA 1 cut(s) 205
BaeGI GKGCMC 1 cut(s) 11
BamHI GGATCC 1 cut(s) 71
BbsI GAAGAC 2 cut(s) 318, 633
BbvI GCAGC 1 cut(s) 557
BccI CCATC 1 cut(s) 350
BciT130I CCWGG 1 cut(s) 562
BciVI GTATCC 1 cut(s) 98
BfaI CTAG 4 cut(s) 123, 158, 386, 476
BfuI GTATCC 1 cut(s) 98
BisI GCNGC 1 cut(s) 571
BlsI GCNGC 1 cut(s) 572
Bme1390I CCNGG 1 cut(s) 562
BmiI GGNNCC 1 cut(s) 73
BmrFI CCNGG 1 cut(s) 562
BmsI GCATC 2 cut(s) 197, 497
BpiI GAAGAC 2 cut(s) 318, 633
BpuEI CTTGAG 1 cut(s) 417
BsaBI GATNNNNATC 1 cut(s) 110
BsaHI GRCGYC 1 cut(s) 331
BsaJI CCNNGG 2 cut(s) 91, 560
BsaWI WCCGGW 2 cut(s) 114, 215
Bse8I GATNNNNATC 1 cut(s) 110
BseAI TCCGGA 1 cut(s) 114
BseBI CCWGG 1 cut(s) 562
BseDI CCNNGG 2 cut(s) 91, 560
BseGI GGATG 2 cut(s) 188, 603
BseJI GATNNNNATC 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 520
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 1 cut(s) 557
Bsh1285I CGRYCG 1 cut(s) 130
BsiEI CGRYCG 1 cut(s) 130
BsiSI CCGG 2 cut(s) 115, 216
BsmI GAATGC 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 11
Bsp13I TCCGGA 1 cut(s) 114
Bsp143I GATC 6 cut(s) 55, 71, 195, 267, 510, 578
BspACI CCGC 2 cut(s) 103, 126
BspEI TCCGGA 1 cut(s) 114
BspHI TCATGA 1 cut(s) 513
BspLI GGNNCC 1 cut(s) 73
BspPI GGATC 4 cut(s) 66, 79, 190, 518
BsrBI CCGCTC 1 cut(s) 103
BssECI CCNNGG 2 cut(s) 91, 560
BssMI GATC 6 cut(s) 55, 71, 195, 267, 510, 578
BssNI GRCGYC 1 cut(s) 331
BssT1I CCWWGG 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 562
Bst4CI ACNGT 2 cut(s) 178, 536
Bst6I CTCTTC 2 cut(s) 453, 474
BstACI GRCGYC 1 cut(s) 331
BstC8I GCNNGC 1 cut(s) 575
BstDEI CTNAG 1 cut(s) 39
BstF5I GGATG 2 cut(s) 188, 603
BstKTI GATC 6 cut(s) 58, 74, 198, 270, 513, 581
BstMBI GATC 6 cut(s) 55, 71, 195, 267, 510, 578
BstMCI CGRYCG 1 cut(s) 130
BstNI CCWGG 1 cut(s) 562
BstSCI CCNGG 1 cut(s) 560
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 557
BstV2I GAAGAC 2 cut(s) 318, 633
BstX2I RGATCY 2 cut(s) 71, 195
BstYI RGATCY 2 cut(s) 71, 195
BsuI GTATCC 1 cut(s) 98
BtsCI GGATG 2 cut(s) 188, 603
Cac8I GCNNGC 1 cut(s) 575
CciI TCATGA 1 cut(s) 513
CseI GACGC 1 cut(s) 339
CviAII CATG 4 cut(s) 18, 514, 582, 635
CviJI RGCY 3 cut(s) 143, 245, 565
CviKI_1 RGCY 3 cut(s) 143, 245, 565
DdeI CTNAG 1 cut(s) 39
DpnI GATC 6 cut(s) 57, 73, 197, 269, 512, 580
DpnII GATC 6 cut(s) 55, 71, 195, 267, 510, 578
Eam1104I CTCTTC 2 cut(s) 453, 474
EarI CTCTTC 2 cut(s) 453, 474
Eco130I CCWWGG 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 560
EcoT14I CCWWGG 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 4 cut(s) 21, 517, 585, 638
FatI CATG 4 cut(s) 17, 513, 581, 634
Fnu4HI GCNGC 1 cut(s) 571
FokI GGATG 2 cut(s) 175, 590
Fsp4HI GCNGC 1 cut(s) 571
FspBI CTAG 4 cut(s) 123, 158, 386, 476
GluI GCNGC 1 cut(s) 571
HapII CCGG 2 cut(s) 115, 216
HgaI GACGC 1 cut(s) 339
Hin1I GRCGYC 1 cut(s) 331
Hin1II CATG 4 cut(s) 21, 517, 585, 638
HinfI GANTC 9 cut(s) 22, 35, 43, 106, 118, 183, 280, 414, 428
HpaII CCGG 2 cut(s) 115, 216
HphI GGTGA 1 cut(s) 205
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 7 cut(s) 69, 115, 131, 386, 476, 514, 596
Hpy99I CGWCG 2 cut(s) 56, 618
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 2 cut(s) 178, 536
HpyCH4IV ACGT 2 cut(s) 249, 392
HpyCH4V TGCA 4 cut(s) 173, 231, 465, 573
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 2 cut(s) 249, 392
Hsp92I GRCGYC 1 cut(s) 331
Hsp92II CATG 4 cut(s) 21, 517, 585, 638
Kpn2I TCCGGA 1 cut(s) 114
Kzo9I GATC 6 cut(s) 55, 71, 195, 267, 510, 578
LpnPI CCDG 8 cut(s) 54, 128, 216, 229, 329, 480, 547, 574
Lsp1109I GCAGC 1 cut(s) 557
LweI GCATC 2 cut(s) 197, 497
MaeI CTAG 4 cut(s) 123, 158, 386, 476
MaeII ACGT 2 cut(s) 249, 392
MaeIII GTNAC 1 cut(s) 596
MalI GATC 6 cut(s) 57, 73, 197, 269, 512, 580
MbiI CCGCTC 1 cut(s) 103
MboI GATC 6 cut(s) 55, 71, 195, 267, 510, 578
MflI RGATCY 2 cut(s) 71, 195
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 2 cut(s) 64, 96
MlyI GAGTC 4 cut(s) 37, 127, 422, 423
MnlI CCTC 3 cut(s) 221, 498, 501
MroI TCCGGA 1 cut(s) 114
MroXI GAANNNNTTC 1 cut(s) 381
MseI TTAA 1 cut(s) 410
MslI CAYNNNNRTG 1 cut(s) 16
MspI CCGG 2 cut(s) 115, 216
MspR9I CCNGG 1 cut(s) 562
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 1 cut(s) 562
NdeII GATC 6 cut(s) 55, 71, 195, 267, 510, 578
NlaIII CATG 4 cut(s) 21, 517, 585, 638
NlaIV GGNNCC 1 cut(s) 73
NmuCI GTSAC 1 cut(s) 596
PagI TCATGA 1 cut(s) 513
PcsI WCGNNNNNNNCGW 1 cut(s) 574
PctI GAATGC 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 5 cut(s) 22, 35, 106, 183, 280
PkrI GCNGC 1 cut(s) 572
PleI GAGTC 4 cut(s) 37, 126, 422, 422
PpsI GAGTC 4 cut(s) 37, 126, 422, 422
Psp1406I AACGTT 1 cut(s) 392
Psp6I CCWGG 1 cut(s) 560
PspGI CCWGG 1 cut(s) 560
PspN4I GGNNCC 1 cut(s) 73
PsuI RGATCY 2 cut(s) 71, 195
RseI CAYNNNNRTG 1 cut(s) 16
SaqAI TTAA 1 cut(s) 410
SatI GCNGC 1 cut(s) 571
Sau3AI GATC 6 cut(s) 55, 71, 195, 267, 510, 578
SchI GAGTC 4 cut(s) 37, 127, 422, 423
ScrFI CCNGG 1 cut(s) 562
SduI GDGCHC 1 cut(s) 11
SetI ASST 7 cut(s) 205, 252, 318, 339, 395, 439, 499
SfaNI GCATC 2 cut(s) 197, 497
SmiMI CAYNNNNRTG 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 432
SmoI CTYRAG 1 cut(s) 432
Sse9I AATT 2 cut(s) 64, 96
SsiI CCGC 2 cut(s) 103, 126
SspMI CTAG 4 cut(s) 123, 158, 386, 476
StyD4I CCNGG 1 cut(s) 560
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 2 cut(s) 178, 536
TaiI ACGT 2 cut(s) 252, 395
TaqI TCGA 2 cut(s) 54, 616
TasI AATT 2 cut(s) 64, 96
TfiI GAWTC 5 cut(s) 22, 35, 106, 183, 280
Tru1I TTAA 1 cut(s) 410
Tru9I TTAA 1 cut(s) 410
TseFI GTSAC 1 cut(s) 596
TseI GCWGC 1 cut(s) 570
Tsp45I GTSAC 1 cut(s) 596
TspDTI ATGAA 3 cut(s) 48, 530, 530
XapI RAATTY 1 cut(s) 64
XbaI TCTAGA 2 cut(s) 385, 475
XmnI GAANNNNTTC 1 cut(s) 381
XspI CTAG 4 cut(s) 123, 158, 386, 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.