Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010057

Physical Location & Seq

Genomic Coordinates Forward (+)

10148951 .. 10151218

Gene Structure 2268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G18370.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGACCATGGCTCTTGCTTCTTCTAAAGCTTTTTCCTCAATCTTCAATACTTTATCACCAATCAATCAGTCGAAATTTGTGTTAGCTTGCTCTGGTTCAAATCATGTAGACGTCATTGATCGGAGAAGAAGAATCATGATCTTTGGCTCGAGTTTGGCTCTCACGTCGTCTCTGCTTGGTTCCAATCAACAGAGACTTCCGATGGAATCCGCAATCGCATTGGAGCAATTCAAAGAAAAAGAAGAAGAGCTTGAGGAAGAAGAAGAGAGAAATGTCAATCTCTTCCAGAAAACTTCGCCGTCTGTTGTTTACATTGAAGCTATTGAGCTTCCCAAAACGTCTTCTGGTGATATACTCACTGATGAGGAAAATGGAAAGATCGAAGGGACAGGTTCAGGCTTCGTTTGGGATAAGCTTGGTCACATTGTTACAAATTATCATGTTATTGCTAAGTTAGCTACTGATCAGTTTGGATTACAACGTTGTAAGGTGTCTCTAGTTGATGCTAAGGGAACAAGATTTAGCAAGGAAGGGAAAATTGTGGGTCTTGATCCAGATAATGATCTAGCTGTGTTGAAGATTGAAACTGAGGGACGTGAACTAAATCCTGTTGTTCTCGGTACCTCCAATGATCTACGCGTAGGTCAAAGTTGCTTTGCGATTGGGAATCCATATGGATATGAAAACACCTTGACAATAGGGGTAGTAAGTGGGTTGGGAAGAGAGATACCTTCACCTAATGGGAAGAGTATTTCAGAAGCTATACAAACCGATGCTGATATTAACTCAGGCAATTCTGGAGGGCCATTGCTTGATTCTTATGGCCATACCATAGGTGTGAACACTGCCACATTCACCCGAAAAGGGAGTGGTATGTCTTCTGGTGTTAACTTTGCCATTCCCATTGACACAGTTGTCCGAACAGTTCCGTACCTCATTGTGTATGGAACAGCTTATAGAGACAGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trypsin_2

Protein Analysis

323

Amino Acids

34.92

Weight (kDa)

5.2

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin_2	PF13365	131 - 232	1.5e-18	Trypsin-like peptidase domain
Trypsin	PF00089	132 - 230	4.6e-06	Trypsin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18370 AT4G18370 AT4G18370
fragaria_vesca	FvH4_3g05290 FvH4_3g05290 FvH4_3g05290 FvH4_3g05290
malus_domestica	MD05G1281600.v1.1
prunus_persica	Prupe.4G083000_v2.0.a1
pyrus_communis	pycom05g26160
rosa_chinensis	RchiOBHm_Chr5g0014431
rosa_laevigata	RLG00000032109
rosa_multiflora	Rmu_sc0031709.1_g000001 Rmu_ssc0000422.1_g000034
rosa_roxburghii	Rroxscaffold_1G00062130
rosa_rugosa	Rorug05G0018300
rosa_samantha	Rh5AG113100 Rh5BG109900 Rh5CG121600 Rh5DG108900
rosa_wichuraiana	Rw5G009810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	914
AatII	GACGTC	1 cut(s)	114
Acc65I	GGTACC	1 cut(s)	620
AccB1I	GGYRCC	1 cut(s)	620
AccI	GTMKAC	1 cut(s)	108
AccII	CGCG	1 cut(s)	639
AciI	CCGC	1 cut(s)	210
AclI	AACGTT	1 cut(s)	481
AclWI	GGATC	1 cut(s)	545
AcoI	YGGCCR	1 cut(s)	823
AcsI	RAATTY	1 cut(s)	74
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	2 cut(s)	622, 932
AfiI	CCNNNNNNNGG	1 cut(s)	864
AflIII	ACRYGT	1 cut(s)	637
AgsI	TTSAA	6 cut(s)	46, 99, 232, 317, 577, 584
AjiI	CACGTC	2 cut(s)	165, 596
Alw26I	GTCTC	4 cut(s)	174, 187, 498, 954
AlwI	GGATC	1 cut(s)	545
AlwNI	CAGNNNCTG	1 cut(s)	969
Ama87I	CYCGRG	1 cut(s)	148
AoxI	GGCC	2 cut(s)	803, 823
ApoI	RAATTY	1 cut(s)	74
Asp718I	GGTACC	1 cut(s)	620
AspS9I	GGNCC	1 cut(s)	803
AsuHPI	GGTGA	4 cut(s)	48, 359, 726, 847
AvaI	CYCGRG	1 cut(s)	148
BalI	TGGCCA	1 cut(s)	825
BanI	GGYRCC	1 cut(s)	620
BbsI	GAAGAC	2 cut(s)	333, 870
BccI	CCATC	1 cut(s)	196
BceAI	ACGGC	1 cut(s)	283
BclI	TGATCA	1 cut(s)	463
BcoDI	GTCTC	4 cut(s)	174, 187, 498, 954
BfaI	CTAG	2 cut(s)	497, 566
BmeT110I	CYCGRG	1 cut(s)	148
BmgBI	CACGTC	2 cut(s)	165, 596
BmgT120I	GGNCC	1 cut(s)	803
BmiI	GGNNCC	2 cut(s)	181, 622
BmsI	GCATC	2 cut(s)	493, 763
BpiI	GAAGAC	2 cut(s)	333, 870
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
BpmI	CTGGAG	1 cut(s)	819
Bpu10I	CCTNAGC	1 cut(s)	507
BpuEI	CTTGAG	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	561
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	1 cut(s)	864
Bse3DI	GCAATG	1 cut(s)	806
Bse8I	GATNNNNATC	1 cut(s)	561
BseDI	CCNNGG	1 cut(s)	6
BseJI	GATNNNNATC	1 cut(s)	561
BseLI	CCNNNNNNNGG	1 cut(s)	864
BseMI	GCAATG	1 cut(s)	806
BseMII	CTCAG	2 cut(s)	579, 801
Bsh1236I	CGCG	1 cut(s)	639
BshFI	GGCC	2 cut(s)	805, 825
BshNI	GGYRCC	1 cut(s)	620
BsiHKCI	CYCGRG	1 cut(s)	148
BslFI	GGGAC	2 cut(s)	400, 606
BslI	CCNNNNNNNGG	1 cut(s)	864
BsmAI	GTCTC	4 cut(s)	174, 187, 498, 954
BsmBI	CGTCTC	1 cut(s)	174
BsmFI	GGGAC	2 cut(s)	400, 606
BsnI	GGCC	2 cut(s)	805, 825
BsoBI	CYCGRG	1 cut(s)	148
Bsp143I	GATC	7 cut(s)	118, 138, 378, 463, 550, 562, 631
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	2 cut(s)	805, 825
BspCNI	CTCAG	2 cut(s)	580, 800
BspFNI	CGCG	1 cut(s)	639
BspHI	TCATGA	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	181, 622
BspPI	GGATC	1 cut(s)	545
BspQI	GCTCTTC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	620
BsrDI	GCAATG	1 cut(s)	806
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	7 cut(s)	118, 138, 378, 463, 550, 562, 631
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	913, 925
Bst6I	CTCTTC	5 cut(s)	240, 258, 287, 715, 740
BstACI	GRCGYC	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	4 cut(s)	450, 507, 588, 787
BstDSI	CCRYGG	1 cut(s)	6
BstFNI	CGCG	1 cut(s)	639
BstKTI	GATC	7 cut(s)	121, 141, 381, 466, 553, 565, 634
BstMAI	GTCTC	4 cut(s)	174, 187, 498, 954
BstMBI	GATC	7 cut(s)	118, 138, 378, 463, 550, 562, 631
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstUI	CGCG	1 cut(s)	639
BstV2I	GAAGAC	2 cut(s)	333, 870
BsuRI	GGCC	2 cut(s)	805, 825
BtgI	CCRYGG	1 cut(s)	6
BtrI	CACGTC	2 cut(s)	165, 596
BtsI	GCAGTG	1 cut(s)	843
BtsIMutI	CAGTG	2 cut(s)	357, 843
Cac8I	GCNNGC	1 cut(s)	88
CaiI	CAGNNNCTG	1 cut(s)	969
CciI	TCATGA	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	803
Csp6I	GTAC	2 cut(s)	621, 931
CviAII	CATG	4 cut(s)	7, 104, 136, 440
CviQI	GTAC	2 cut(s)	621, 931
DdeI	CTNAG	4 cut(s)	450, 507, 588, 787
DpnI	GATC	7 cut(s)	120, 140, 380, 465, 552, 564, 633
DpnII	GATC	7 cut(s)	118, 138, 378, 463, 550, 562, 631
DrdI	GACNNNNNNGTC	1 cut(s)	914
DseDI	GACNNNNNNGTC	1 cut(s)	914
EaeI	YGGCCR	1 cut(s)	823
Eam1104I	CTCTTC	5 cut(s)	240, 258, 287, 715, 740
EarI	CTCTTC	5 cut(s)	240, 258, 287, 715, 740
Eco130I	CCWWGG	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	4 cut(s)	10, 107, 139, 443
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FaqI	GGGAC	2 cut(s)	400, 606
FatI	CATG	4 cut(s)	6, 103, 135, 439
FauNDI	CATATG	1 cut(s)	673
FbaI	TGATCA	1 cut(s)	463
FblI	GTMKAC	1 cut(s)	108
FspBI	CTAG	2 cut(s)	497, 566
GsuI	CTGGAG	1 cut(s)	819
HaeIII	GGCC	2 cut(s)	805, 825
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	4 cut(s)	10, 107, 139, 443
HincII	GTYRAC	1 cut(s)	889
HindII	GTYRAC	1 cut(s)	889
HindIII	AAGCTT	2 cut(s)	27, 413
HinfI	GANTC	5 cut(s)	132, 206, 667, 815, 966
HpaI	GTTAAC	1 cut(s)	889
HphI	GGTGA	4 cut(s)	48, 359, 726, 847
Hpy166II	GTNNAC	5 cut(s)	109, 310, 599, 841, 889
Hpy188I	TCNGA	5 cut(s)	123, 201, 757, 920, 971
Hpy188III	TCNNGA	5 cut(s)	136, 286, 548, 554, 798
Hpy8I	GTNNAC	5 cut(s)	109, 310, 599, 841, 889
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	3 cut(s)	377, 524, 741
HpyCH4III	ACNGT	2 cut(s)	913, 925
HpyCH4IV	ACGT	5 cut(s)	111, 164, 338, 481, 595
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	4 cut(s)	450, 507, 588, 787
HpySE526I	ACGT	5 cut(s)	111, 164, 338, 481, 595
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	4 cut(s)	10, 107, 139, 443
KpnI	GGTACC	1 cut(s)	624
Ksp22I	TGATCA	1 cut(s)	463
KspAI	GTTAAC	1 cut(s)	889
Kzo9I	GATC	7 cut(s)	118, 138, 378, 463, 550, 562, 631
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	1 cut(s)	223
LweI	GCATC	2 cut(s)	493, 763
MaeI	CTAG	2 cut(s)	497, 566
MaeII	ACGT	5 cut(s)	111, 164, 338, 481, 595
MaeIII	GTNAC	2 cut(s)	419, 427
MalI	GATC	7 cut(s)	120, 140, 380, 465, 552, 564, 633
MboI	GATC	7 cut(s)	118, 138, 378, 463, 550, 562, 631
MlsI	TGGCCA	1 cut(s)	825
MluCI	AATT	5 cut(s)	74, 227, 433, 537, 793
MluI	ACGCGT	1 cut(s)	637
MluNI	TGGCCA	1 cut(s)	825
MnlI	CCTC	7 cut(s)	46, 247, 358, 583, 634, 794, 944
Mox20I	TGGCCA	1 cut(s)	825
MscI	TGGCCA	1 cut(s)	825
MseI	TTAA	2 cut(s)	783, 888
MslI	CAYNNNNRTG	1 cut(s)	836
Msp20I	TGGCCA	1 cut(s)	825
MvnI	CGCG	1 cut(s)	639
MwoI	GCNNNNNNNGC	1 cut(s)	455
NcoI	CCATGG	1 cut(s)	6
NdeI	CATATG	1 cut(s)	673
NdeII	GATC	7 cut(s)	118, 138, 378, 463, 550, 562, 631
NlaIII	CATG	4 cut(s)	10, 107, 139, 443
NlaIV	GGNNCC	2 cut(s)	181, 622
NmuCI	GTSAC	1 cut(s)	419
PaeR7I	CTCGAG	1 cut(s)	148
PagI	TCATGA	1 cut(s)	135
PciSI	GCTCTTC	1 cut(s)	240
PfeI	GAWTC	5 cut(s)	132, 206, 667, 815, 966
Psp1406I	AACGTT	1 cut(s)	481
PspN4I	GGNNCC	2 cut(s)	181, 622
PspPI	GGNCC	1 cut(s)	803
PspXI	VCTCGAGB	1 cut(s)	148
PstNI	CAGNNNCTG	1 cut(s)	969
RsaI	GTAC	2 cut(s)	622, 932
RsaNI	GTAC	2 cut(s)	621, 931
RseI	CAYNNNNRTG	1 cut(s)	836
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	783, 888
Sau3AI	GATC	7 cut(s)	118, 138, 378, 463, 550, 562, 631
Sau96I	GGNCC	1 cut(s)	803
SfaNI	GCATC	2 cut(s)	493, 763
Sfr274I	CTCGAG	1 cut(s)	148
SlaI	CTCGAG	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	836
SmlI	CTYRAG	2 cut(s)	148, 251
SmoI	CTYRAG	2 cut(s)	148, 251
Sse9I	AATT	5 cut(s)	74, 227, 433, 537, 793
SsiI	CCGC	1 cut(s)	210
SspMI	CTAG	2 cut(s)	497, 566
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	2 cut(s)	913, 925
TaiI	ACGT	5 cut(s)	114, 167, 341, 484, 598
TaqI	TCGA	3 cut(s)	71, 149, 381
TasI	AATT	5 cut(s)	74, 227, 433, 537, 793
TfiI	GAWTC	5 cut(s)	132, 206, 667, 815, 966
Tru1I	TTAA	2 cut(s)	783, 888
Tru9I	TTAA	2 cut(s)	783, 888
TscAI	CASTG	2 cut(s)	364, 850
TseFI	GTSAC	1 cut(s)	419
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	1 cut(s)	696
TspGWI	ACGGA	1 cut(s)	918
TspRI	CASTG	2 cut(s)	364, 850
XapI	RAATTY	1 cut(s)	74
XhoI	CTCGAG	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	2 cut(s)	497, 566
ZraI	GACGTC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.