Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0010057

Physical Location & Seq

Genomic Coordinates Forward (+)

4050992 .. 4053738

Gene Structure 2747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G083000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGTGGTGTTGGGTTCTCTTAGCCAAATCAAGCCTTCTCCAATACCAACCAACTCTTCTTCTTCTTCCTCAAACCCTTCACAGAAGGGTCTTCTTCTCACAAGGAGAAGAGCCATAGTGCTTGGTCCAAGTGTTGTGGTAGCTTCTTTGCTCCATTTCTATAACCCCATTTCCCAACAACCTTCATCTCACCTTGCACTTGCTCAGCAGCAACAAGAAGATGAGCTTCAGCAAGAAGAGGACCGCTCTGTGCATCTCTTCCAGGAAACGTCTCCATCAGTTGTTTTTATTAAAGACCTTGAAATAGACAAAAGCCTCAAGGCCTCTCCTGATGCCGTCTTCCTAAGTGAGGATGGAAATTCCAAAGTTGAAGGAACAGGTTCAGGCTTCATTTGGGATAAGTTCGGTCACATTGTCACAAATTACCACGTTGTGGCTAAATTGGCCACAGACCAAACCGGATTACAGCGTTGTAAGGTTTATCTTGTAGATGCAAGAGGCAATGGTTTTTACAGTGAAGGCAAGATTGTTGGTGTGGATCCAGCCTATGATCTGGCTGTTCTTAAGGTTGATGTTGAAGGACATGAGTTAAAACCTGTTGTTCTTGGCACATCTAATGGTTTACATGTGGGTCAGAGCTGCTTTGCCATTGGGAATCCTTATGGATACGAGAACACTCTAACAATAGGGGTGGTCAGTGGATTAGGCAGGGAGATACCCTCACCAGATGGAAAGGCCATTAGAGGAGCTATTCAAACAGACGCTGCCATTAACTCTGGGAATTCAGGTGGGCCGTTGATTGATTCATATGGTCATATTATTGGAGTTAACACAGCAACTTTCACTCGCAAAGGAACAGGAGCATCATCTGGTGTTAACTTTGCAATACCAATCGACACTGTTGTGCGAACTGTACCGTACCTTATTGTATATGGAACACCGTACCGTGACAGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trypsin_2

Protein Analysis

320

Amino Acids

34.04

Weight (kDa)

6.06

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18370 AT4G18370 AT4G18370
fragaria_vesca	FvH4_3g05290 FvH4_3g05290 FvH4_3g05290 FvH4_3g05290
malus_domestica	MD05G1281600.v1.1
prunus_persica	Prupe.4G083000_v2.0.a1
pyrus_communis	pycom05g26160
rosa_chinensis	RchiOBHm_Chr5g0014431
rosa_laevigata	RLG00000032109
rosa_multiflora	Rmu_sc0031709.1_g000001 Rmu_ssc0000422.1_g000034
rosa_roxburghii	Rroxscaffold_1G00062130
rosa_rugosa	Rorug05G0018300
rosa_samantha	Rh5AG113100 Rh5BG109900 Rh5CG121600 Rh5DG108900
rosa_wichuraiana	Rw5G009810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	433
AccBSI	CCGCTC	1 cut(s)	246
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	2 cut(s)	533, 546
AcoI	YGGCCR	1 cut(s)	444
AcsI	RAATTY	2 cut(s)	358, 781
AcuI	CTGAAG	1 cut(s)	212
AdeI	CACNNNGTG	1 cut(s)	433
AfaI	GTAC	3 cut(s)	915, 920, 944
AfiI	CCNNNNNNNGG	2 cut(s)	349, 433
AflII	CTTAAG	1 cut(s)	563
AflIII	ACRYGT	1 cut(s)	625
AgsI	TTSAA	4 cut(s)	302, 371, 578, 755
AjnI	CCWGG	1 cut(s)	261
AjuI	GAANNNNNNNTTGG	2 cut(s)	40, 72
AleI	CACNNNNGTG	1 cut(s)	902
AluBI	AGCT	4 cut(s)	143, 226, 639, 749
AluI	AGCT	4 cut(s)	143, 226, 639, 749
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	2 cut(s)	533, 546
AlwNI	CAGNNNCTG	1 cut(s)	764
AoxI	GGCC	4 cut(s)	321, 444, 735, 791
ApeKI	GCWGC	3 cut(s)	208, 639, 764
ApoI	RAATTY	2 cut(s)	358, 781
Asp700I	GAANNNNTTC	1 cut(s)	379
AspS9I	GGNCC	3 cut(s)	125, 241, 791
AsuHPI	GGTGA	2 cut(s)	182, 714
AvaII	GGWCC	2 cut(s)	125, 241
BalI	TGGCCA	1 cut(s)	446
BamHI	GGATCC	1 cut(s)	538
BbsI	GAAGAC	2 cut(s)	83, 331
BbvI	GCAGC	3 cut(s)	220, 626, 751
BccI	CCATC	3 cut(s)	283, 347, 722
BceAI	ACGGC	2 cut(s)	320, 778
BciT130I	CCWGG	1 cut(s)	263
BciVI	GTATCC	1 cut(s)	659
BcoDI	GTCTC	1 cut(s)	276
BfrI	CTTAAG	1 cut(s)	563
BfuI	GTATCC	1 cut(s)	659
BisI	GCNGC	3 cut(s)	209, 640, 765
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	3 cut(s)	210, 641, 766
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	2 cut(s)	125, 241
BmgT120I	GGNCC	3 cut(s)	125, 241, 791
BmiI	GGNNCC	1 cut(s)	540
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	4 cut(s)	262, 322, 481, 872
BpiI	GAAGAC	2 cut(s)	83, 331
BplI	GAGNNNNNCTC	4 cut(s)	230, 262, 704, 736
Bpu1102I	GCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	302
BsaWI	WCCGGW	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	2 cut(s)	349, 433
Bse3DI	GCAATG	1 cut(s)	508
BseBI	CCWGG	1 cut(s)	263
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	2 cut(s)	349, 433
BseMI	GCAATG	1 cut(s)	508
BseMII	CTCAG	1 cut(s)	218
BseRI	GAGGAG	1 cut(s)	759
BseXI	GCAGC	3 cut(s)	220, 626, 751
BshFI	GGCC	4 cut(s)	323, 446, 737, 793
BsiSI	CCGG	1 cut(s)	459
BslI	CCNNNNNNNGG	2 cut(s)	349, 433
BsmAI	GTCTC	1 cut(s)	276
BsmBI	CGTCTC	1 cut(s)	276
BsnI	GGCC	4 cut(s)	323, 446, 737, 793
Bsp143I	GATC	2 cut(s)	538, 550
Bsp1720I	GCTNAGC	1 cut(s)	204
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	4 cut(s)	323, 446, 737, 793
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	540
BspPI	GGATC	2 cut(s)	533, 546
BspQI	GCTCTTC	1 cut(s)	103
BspTI	CTTAAG	1 cut(s)	563
BsrBI	CCGCTC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	508
BssMI	GATC	2 cut(s)	538, 550
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	6 cut(s)	515, 901, 913, 918, 942, 947
Bst6I	CTCTTC	4 cut(s)	61, 103, 231, 263
BstAFI	CTTAAG	1 cut(s)	563
BstDEI	CTNAG	3 cut(s)	20, 204, 344
BstENI	CCTNNNNNAGG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	2 cut(s)	541, 553
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	2 cut(s)	538, 550
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstNI	CCWGG	1 cut(s)	263
BstNSI	RCATGY	1 cut(s)	629
BstSCI	CCNGG	1 cut(s)	261
BstV1I	GCAGC	3 cut(s)	220, 626, 751
BstV2I	GAAGAC	2 cut(s)	83, 331
BstX2I	RGATCY	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	538
BsuI	GTATCC	1 cut(s)	659
BsuRI	GGCC	4 cut(s)	323, 446, 737, 793
BtsCI	GGATG	1 cut(s)	358
BtsIMutI	CAGTG	3 cut(s)	520, 703, 897
CaiI	CAGNNNCTG	1 cut(s)	764
Cfr13I	GGNCC	3 cut(s)	125, 241, 791
CseI	GACGC	1 cut(s)	770
Csp6I	GTAC	3 cut(s)	914, 919, 943
CspCI	CAANNNNNGTGG	4 cut(s)	117, 152, 672, 707
CviAII	CATG	2 cut(s)	584, 626
CviQI	GTAC	3 cut(s)	914, 919, 943
DdeI	CTNAG	3 cut(s)	20, 204, 344
DpnI	GATC	2 cut(s)	540, 552
DpnII	GATC	2 cut(s)	538, 550
DraIII	CACNNNGTG	1 cut(s)	433
EaeI	YGGCCR	1 cut(s)	444
Eam1104I	CTCTTC	4 cut(s)	61, 103, 231, 263
EarI	CTCTTC	4 cut(s)	61, 103, 231, 263
Eco147I	AGGCCT	1 cut(s)	323
Eco47I	GGWCC	2 cut(s)	125, 241
Eco57I	CTGAAG	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	347
EcoRI	GAATTC	1 cut(s)	781
EcoRII	CCWGG	1 cut(s)	261
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	2 cut(s)	587, 629
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	2 cut(s)	583, 625
FauNDI	CATATG	1 cut(s)	808
Fnu4HI	GCNGC	3 cut(s)	209, 640, 765
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	3 cut(s)	209, 640, 765
GluI	GCNGC	3 cut(s)	209, 640, 765
HaeIII	GGCC	4 cut(s)	323, 446, 737, 793
HapII	CCGG	1 cut(s)	459
HgaI	GACGC	1 cut(s)	770
Hin1II	CATG	2 cut(s)	587, 629
HincII	GTYRAC	2 cut(s)	829, 877
HindII	GTYRAC	2 cut(s)	829, 877
HinfI	GANTC	2 cut(s)	655, 803
HpaI	GTTAAC	2 cut(s)	829, 877
HpaII	CCGG	1 cut(s)	459
HphI	GGTGA	2 cut(s)	182, 714
Hpy166II	GTNNAC	3 cut(s)	623, 829, 877
Hpy188I	TCNGA	1 cut(s)	636
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	3 cut(s)	623, 829, 877
HpyAV	CCTTC	7 cut(s)	45, 79, 87, 192, 365, 512, 572
HpyCH4III	ACNGT	6 cut(s)	515, 901, 913, 918, 942, 947
HpyCH4IV	ACGT	2 cut(s)	269, 429
HpyCH4V	TGCA	4 cut(s)	197, 253, 494, 884
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	3 cut(s)	20, 204, 344
HpySE526I	ACGT	2 cut(s)	269, 429
Hsp92II	CATG	2 cut(s)	587, 629
KspAI	GTTAAC	2 cut(s)	829, 877
Kzo9I	GATC	2 cut(s)	538, 550
LguI	GCTCTTC	1 cut(s)	103
LmnI	GCTCC	3 cut(s)	156, 746, 860
Lsp1109I	GCAGC	3 cut(s)	220, 626, 751
LweI	GCATC	4 cut(s)	262, 322, 481, 872
MaeII	ACGT	2 cut(s)	269, 429
MaeIII	GTNAC	3 cut(s)	407, 415, 947
MalI	GATC	2 cut(s)	540, 552
MbiI	CCGCTC	1 cut(s)	246
MboI	GATC	2 cut(s)	538, 550
MflI	RGATCY	1 cut(s)	538
MlsI	TGGCCA	1 cut(s)	446
MluCI	AATT	4 cut(s)	358, 421, 440, 781
MluNI	TGGCCA	1 cut(s)	446
MnlI	CCTC	8 cut(s)	79, 232, 326, 334, 343, 491, 730, 737
Mox20I	TGGCCA	1 cut(s)	446
MroXI	GAANNNNTTC	1 cut(s)	379
MscI	TGGCCA	1 cut(s)	446
MseI	TTAA	6 cut(s)	291, 564, 590, 771, 828, 876
MslI	CAYNNNNRTG	1 cut(s)	902
Msp20I	TGGCCA	1 cut(s)	446
MspCI	CTTAAG	1 cut(s)	563
MspI	CCGG	1 cut(s)	459
MspR9I	CCNGG	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	443
NdeI	CATATG	1 cut(s)	808
NdeII	GATC	2 cut(s)	538, 550
NlaIII	CATG	2 cut(s)	587, 629
NlaIV	GGNNCC	1 cut(s)	540
NmuCI	GTSAC	3 cut(s)	407, 415, 947
NspI	RCATGY	1 cut(s)	629
OliI	CACNNNNGTG	1 cut(s)	902
PceI	AGGCCT	1 cut(s)	323
PciI	ACATGT	1 cut(s)	625
PciSI	GCTCTTC	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	379
PfeI	GAWTC	2 cut(s)	655, 803
PflMI	CCANNNNNTGG	1 cut(s)	433
PfoI	TCCNGGA	1 cut(s)	261
PkrI	GCNGC	3 cut(s)	210, 641, 766
PscI	ACATGT	1 cut(s)	625
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	540
PspPI	GGNCC	3 cut(s)	125, 241, 791
PstNI	CAGNNNCTG	1 cut(s)	764
PsuI	RGATCY	1 cut(s)	538
RsaI	GTAC	3 cut(s)	915, 920, 944
RsaNI	GTAC	3 cut(s)	914, 919, 943
RseI	CAYNNNNRTG	1 cut(s)	902
SapI	GCTCTTC	1 cut(s)	103
SaqAI	TTAA	6 cut(s)	291, 564, 590, 771, 828, 876
SatI	GCNGC	3 cut(s)	209, 640, 765
Sau3AI	GATC	2 cut(s)	538, 550
Sau96I	GGNCC	3 cut(s)	125, 241, 791
ScrFI	CCNGG	1 cut(s)	263
SfaNI	GCATC	4 cut(s)	262, 322, 481, 872
SinI	GGWCC	2 cut(s)	125, 241
SmiMI	CAYNNNNRTG	1 cut(s)	902
SmlI	CTYRAG	2 cut(s)	317, 563
SmoI	CTYRAG	2 cut(s)	317, 563
Sse9I	AATT	4 cut(s)	358, 421, 440, 781
SseBI	AGGCCT	1 cut(s)	323
SsiI	CCGC	1 cut(s)	244
StuI	AGGCCT	1 cut(s)	323
StyD4I	CCNGG	1 cut(s)	261
TaaI	ACNGT	6 cut(s)	515, 901, 913, 918, 942, 947
TaiI	ACGT	2 cut(s)	272, 432
TaqI	TCGA	1 cut(s)	894
TaqII	GACCGA	1 cut(s)	395
TasI	AATT	4 cut(s)	358, 421, 440, 781
TfiI	GAWTC	2 cut(s)	655, 803
Tru1I	TTAA	6 cut(s)	291, 564, 590, 771, 828, 876
Tru9I	TTAA	6 cut(s)	291, 564, 590, 771, 828, 876
TscAI	CASTG	3 cut(s)	520, 703, 904
TseFI	GTSAC	3 cut(s)	407, 415, 947
TseI	GCWGC	3 cut(s)	208, 639, 764
Tsp45I	GTSAC	3 cut(s)	407, 415, 947
TspDTI	ATGAA	3 cut(s)	174, 379, 795
TspRI	CASTG	3 cut(s)	520, 703, 904
Van91I	CCANNNNNTGG	1 cut(s)	433
Vha464I	CTTAAG	1 cut(s)	563
VpaK11BI	GGWCC	2 cut(s)	125, 241
XagI	CCTNNNNNAGG	1 cut(s)	347
XapI	RAATTY	2 cut(s)	358, 781
XceI	RCATGY	1 cut(s)	629
XmnI	GAANNNNTTC	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.