Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010057

Physical Location & Seq

Genomic Coordinates Reverse (-)

84165277 .. 84170464

Gene Structure 5188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00062130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGTGGTCTTGGGTTCTCTTACCCAAATCAAGCCCTCTCCACCAGTACCAACCACCTCTTTCTCTTCTTCTTCAAATCCTTCCCCGAAGACCCTCTTCACAAGACGAAGAGCCGTACTGCTTGGCCCAACTGCTTTGGTGGCTTCCTTGCTCCATTTCCACAACCCCATTTCATCACAACCTTCAGCAATTGCTCTGCAACAGTTACAAGATGAGCTCCAGCAGGAAGAAGACCGGGCTGTGAATCTTTTCCAGGAAACTTCTCCATCAGTCGTTTACATTAAAGACATTGAGATAGACAAAAGCCTAAAAGGTTCTCCTACTGCAGTCTCACAAAGTGAGGATGATAATGCTAAAGTTGAAGGAACAGGTTCAGGCTTCATTTGGGATAAGTTTGGTCACATTGTCACAAATTACCATGTTGTAGCTAAATTGGCTACAGATCAAACCGGATTACAGCGTTGTAAGGTTTATATGGTTGATGCAATGGGCAATGGTTTTAGCAGTGAAGGCAAGATTGTTGGTTTAGATGCATCTCGTGATCTGGCTGTTCTTAAGGTTGATATTGAAGGACATGAGCTAAAACCTGTTGTTCTCGGTACATCTAGTGATTTGCGTGTGGGTCAGACGTGCTTCGCCATTGGAAATCCATATGGATATGAGAACACACTAACAATCGGGGTGGTCAGTGGATTAGGCAGGGAGATACCCTCACCAGACGGAAATGCCATTAAGGGAGCTATTCAAACTGACGCCGCTATTAATGCTGACGTTTGTAAATGCTATATTCCTGCAGGGAATTCAGGCGGGCCATTGATTGATTCATATGGTCATGTTATTGGAGTTAATACATCAACGTTCACTCGCAAAGGGTCAGGAACATCATCTGGTGTTAACTTCGCAATACCAGTAGATTCTGTGGTGCGGACCGTACCTTACCTTATTGTATATGGAACGCCTTATAGTAACAGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trypsin_2

Protein Analysis

325

Amino Acids

34.48

Weight (kDa)

5.87

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin	PF00089	123 - 308	9.4e-14	Trypsin
Trypsin_2	PF13365	124 - 282	4.5e-28	Trypsin-like peptidase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18370 AT4G18370 AT4G18370
fragaria_vesca	FvH4_3g05290 FvH4_3g05290 FvH4_3g05290 FvH4_3g05290
malus_domestica	MD05G1281600.v1.1
prunus_persica	Prupe.4G083000_v2.0.a1
pyrus_communis	pycom05g26160
rosa_chinensis	RchiOBHm_Chr5g0014431
rosa_laevigata	RLG00000032109
rosa_multiflora	Rmu_sc0031709.1_g000001 Rmu_ssc0000422.1_g000034
rosa_roxburghii	Rroxscaffold_1G00062130
rosa_rugosa	Rorug05G0018300
rosa_samantha	Rh5AG113100 Rh5BG109900 Rh5CG121600 Rh5DG108900
rosa_wichuraiana	Rw5G009810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	756, 807, 925
AclI	AACGTT	1 cut(s)	857
AcsI	RAATTY	1 cut(s)	799
AcuI	CTGAAG	1 cut(s)	168
AcyI	GRCGYC	1 cut(s)	753
AdeI	CACNNNGTG	1 cut(s)	338
AfaI	GTAC	4 cut(s)	48, 117, 601, 933
AflII	CTTAAG	1 cut(s)	554
AgsI	TTSAA	4 cut(s)	75, 362, 569, 746
AjiI	CACGTC	1 cut(s)	630
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	4 cut(s)	217, 428, 580, 740
AluI	AGCT	4 cut(s)	217, 428, 580, 740
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	1 cut(s)	334
AoxI	GGCC	2 cut(s)	124, 809
ApoI	RAATTY	1 cut(s)	799
AseI	ATTAAT	1 cut(s)	762
Asp700I	GAANNNNTTC	2 cut(s)	248, 370
AspS9I	GGNCC	3 cut(s)	125, 809, 927
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	705
AvaII	GGWCC	1 cut(s)	927
BanII	GRGCYC	1 cut(s)	219
BauI	CACGAG	1 cut(s)	537
BbsI	GAAGAC	2 cut(s)	95, 237
Bbv12I	GWGCWC	1 cut(s)	219
BccI	CCATC	1 cut(s)	274
BceAI	ACGGC	1 cut(s)	98
BciT130I	CCWGG	1 cut(s)	254
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	1 cut(s)	606
BfmI	CTRYAG	3 cut(s)	324, 438, 792
BfrI	CTTAAG	1 cut(s)	554
BisI	GCNGC	1 cut(s)	756
BlsI	GCNGC	1 cut(s)	757
Bme1390I	CCNGG	2 cut(s)	236, 254
Bme18I	GGWCC	1 cut(s)	927
BmgBI	CACGTC	1 cut(s)	630
BmgT120I	GGNCC	3 cut(s)	125, 809, 927
BmrFI	CCNGG	2 cut(s)	236, 254
BmsI	GCATC	3 cut(s)	472, 520, 542
BpiI	GAAGAC	2 cut(s)	95, 237
BplI	GAGNNNNNCTC	2 cut(s)	695, 727
BpmI	CTGGAG	1 cut(s)	203
BpuMI	CCSGG	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	753
BsaWI	WCCGGW	1 cut(s)	449
Bse1I	ACTGG	2 cut(s)	44, 908
Bse3DI	GCAATG	2 cut(s)	492, 499
BseBI	CCWGG	1 cut(s)	254
BseGI	GGATG	1 cut(s)	349
BseMI	GCAATG	2 cut(s)	492, 499
BseNI	ACTGG	2 cut(s)	44, 908
BshFI	GGCC	2 cut(s)	126, 811
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	2 cut(s)	235, 450
BsmAI	GTCTC	1 cut(s)	334
BsnI	GGCC	2 cut(s)	126, 811
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	442, 541
BspACI	CCGC	3 cut(s)	756, 807, 925
BspANI	GGCC	2 cut(s)	126, 811
BspMAI	CTGCAG	2 cut(s)	328, 796
BspQI	GCTCTTC	1 cut(s)	103
BspTI	CTTAAG	1 cut(s)	554
BsrDI	GCAATG	2 cut(s)	492, 499
BsrI	ACTGG	2 cut(s)	44, 908
BssMI	GATC	2 cut(s)	442, 541
BssNI	GRCGYC	1 cut(s)	753
BssSI	CACGAG	1 cut(s)	537
Bst2BI	CACGAG	1 cut(s)	537
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	2 cut(s)	204, 931
Bst6I	CTCTTC	3 cut(s)	70, 101, 103
BstACI	GRCGYC	1 cut(s)	753
BstAFI	CTTAAG	1 cut(s)	554
BstC8I	GCNNGC	1 cut(s)	809
BstF5I	GGATG	1 cut(s)	349
BstKTI	GATC	2 cut(s)	445, 544
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	2 cut(s)	442, 541
BstMWI	GCNNNNNNNGC	4 cut(s)	140, 434, 510, 764
BstNI	CCWGG	1 cut(s)	254
BstSCI	CCNGG	2 cut(s)	234, 252
BstSFI	CTRYAG	3 cut(s)	324, 438, 792
BstV2I	GAAGAC	2 cut(s)	95, 237
BsuRI	GGCC	2 cut(s)	126, 811
BtrI	CACGTC	1 cut(s)	630
BtsCI	GGATG	1 cut(s)	349
BtsI	GCAGTG	1 cut(s)	511
BtsIMutI	CAGTG	2 cut(s)	511, 694
Cac8I	GCNNGC	1 cut(s)	809
Cfr13I	GGNCC	3 cut(s)	125, 809, 927
CpoI	CGGWCCG	1 cut(s)	927
CseI	GACGC	1 cut(s)	761
Csp6I	GTAC	4 cut(s)	47, 116, 600, 932
CspCI	CAANNNNNGTGG	2 cut(s)	663, 698
CspI	CGGWCCG	1 cut(s)	927
CviAII	CATG	3 cut(s)	419, 575, 833
CviQI	GTAC	4 cut(s)	47, 116, 600, 932
DpnI	GATC	2 cut(s)	444, 543
DpnII	GATC	2 cut(s)	442, 541
DraIII	CACNNNGTG	1 cut(s)	338
Eam1104I	CTCTTC	3 cut(s)	70, 101, 103
EarI	CTCTTC	3 cut(s)	70, 101, 103
Ecl136II	GAGCTC	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	927
Eco53kI	GAGCTC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	168
EcoICRI	GAGCTC	1 cut(s)	217
EcoRI	GAATTC	1 cut(s)	799
EcoRII	CCWGG	1 cut(s)	252
EcoT22I	ATGCAT	1 cut(s)	535
EcoT38I	GRGCYC	1 cut(s)	219
FaeI	CATG	3 cut(s)	422, 578, 836
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FatI	CATG	3 cut(s)	418, 574, 832
FauI	CCCGC	1 cut(s)	800
FauNDI	CATATG	2 cut(s)	652, 826
Fnu4HI	GCNGC	1 cut(s)	756
FokI	GGATG	1 cut(s)	356
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	756
FspBI	CTAG	1 cut(s)	606
GluI	GCNGC	1 cut(s)	756
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	126, 811
HapII	CCGG	2 cut(s)	235, 450
HgaI	GACGC	1 cut(s)	761
Hin1I	GRCGYC	1 cut(s)	753
Hin1II	CATG	3 cut(s)	422, 578, 836
HincII	GTYRAC	1 cut(s)	895
HindII	GTYRAC	1 cut(s)	895
HinfI	GANTC	3 cut(s)	244, 821, 914
HpaI	GTTAAC	1 cut(s)	895
HpaII	CCGG	2 cut(s)	235, 450
HphI	GGTGA	1 cut(s)	705
Hpy166II	GTNNAC	3 cut(s)	277, 861, 895
Hpy188I	TCNGA	1 cut(s)	627
Hpy188III	TCNNGA	2 cut(s)	539, 876
Hpy8I	GTNNAC	3 cut(s)	277, 861, 895
HpyAV	CCTTC	5 cut(s)	90, 192, 356, 503, 563
HpyCH4III	ACNGT	2 cut(s)	204, 931
HpyCH4IV	ACGT	3 cut(s)	629, 771, 857
HpyCH4V	TGCA	5 cut(s)	199, 326, 485, 533, 794
HpyF10VI	GCNNNNNNNGC	4 cut(s)	140, 434, 510, 764
HpySE526I	ACGT	3 cut(s)	629, 771, 857
Hsp92I	GRCGYC	1 cut(s)	753
Hsp92II	CATG	3 cut(s)	422, 578, 836
KspAI	GTTAAC	1 cut(s)	895
Kzo9I	GATC	2 cut(s)	442, 541
LguI	GCTCTTC	1 cut(s)	103
LmnI	GCTCC	3 cut(s)	156, 222, 737
LweI	GCATC	3 cut(s)	472, 520, 542
MaeI	CTAG	1 cut(s)	606
MaeII	ACGT	3 cut(s)	629, 771, 857
MaeIII	GTNAC	4 cut(s)	204, 398, 406, 965
MalI	GATC	2 cut(s)	444, 543
MboI	GATC	2 cut(s)	442, 541
MboII	GAAGA	8 cut(s)	57, 60, 63, 88, 100, 120, 239, 242
MfeI	CAATTG	1 cut(s)	189
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	4 cut(s)	189, 412, 431, 799
MnlI	CCTC	5 cut(s)	46, 67, 104, 334, 721
Mph1103I	ATGCAT	1 cut(s)	535
MroXI	GAANNNNTTC	2 cut(s)	248, 370
MseI	TTAA	6 cut(s)	282, 555, 732, 762, 846, 894
MspCI	CTTAAG	1 cut(s)	554
MspI	CCGG	2 cut(s)	235, 450
MspR9I	CCNGG	2 cut(s)	236, 254
MunI	CAATTG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	4 cut(s)	140, 434, 510, 764
NciI	CCSGG	1 cut(s)	236
NdeI	CATATG	2 cut(s)	652, 826
NdeII	GATC	2 cut(s)	442, 541
NlaIII	CATG	3 cut(s)	422, 578, 836
NmuCI	GTSAC	2 cut(s)	398, 406
NsiI	ATGCAT	1 cut(s)	535
PciSI	GCTCTTC	1 cut(s)	103
PdmI	GAANNNNTTC	2 cut(s)	248, 370
PfeI	GAWTC	3 cut(s)	244, 821, 914
PfoI	TCCNGGA	1 cut(s)	252
PkrI	GCNGC	1 cut(s)	757
PshBI	ATTAAT	1 cut(s)	762
Psp124BI	GAGCTC	1 cut(s)	219
Psp1406I	AACGTT	1 cut(s)	857
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PspPI	GGNCC	3 cut(s)	125, 809, 927
PstI	CTGCAG	2 cut(s)	328, 796
RsaI	GTAC	4 cut(s)	48, 117, 601, 933
RsaNI	GTAC	4 cut(s)	47, 116, 600, 932
Rsr2I	CGGWCCG	1 cut(s)	927
RsrII	CGGWCCG	1 cut(s)	927
SacI	GAGCTC	1 cut(s)	219
SapI	GCTCTTC	1 cut(s)	103
SaqAI	TTAA	6 cut(s)	282, 555, 732, 762, 846, 894
SatI	GCNGC	1 cut(s)	756
Sau3AI	GATC	2 cut(s)	442, 541
Sau96I	GGNCC	3 cut(s)	125, 809, 927
SbfI	CCTGCAGG	1 cut(s)	796
ScrFI	CCNGG	2 cut(s)	236, 254
SdaI	CCTGCAGG	1 cut(s)	796
SduI	GDGCHC	1 cut(s)	219
SfaNI	GCATC	3 cut(s)	472, 520, 542
SfcI	CTRYAG	3 cut(s)	324, 438, 792
SinI	GGWCC	1 cut(s)	927
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse8387I	CCTGCAGG	1 cut(s)	796
Sse9I	AATT	4 cut(s)	189, 412, 431, 799
SsiI	CCGC	3 cut(s)	756, 807, 925
SspMI	CTAG	1 cut(s)	606
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	234, 252
TaaI	ACNGT	2 cut(s)	204, 931
TaiI	ACGT	3 cut(s)	632, 774, 860
TasI	AATT	4 cut(s)	189, 412, 431, 799
TauI	GCSGC	1 cut(s)	758
TfiI	GAWTC	3 cut(s)	244, 821, 914
Tru1I	TTAA	6 cut(s)	282, 555, 732, 762, 846, 894
Tru9I	TTAA	6 cut(s)	282, 555, 732, 762, 846, 894
TscAI	CASTG	2 cut(s)	511, 694
TseFI	GTSAC	2 cut(s)	398, 406
Tsp45I	GTSAC	2 cut(s)	398, 406
TspDTI	ATGAA	3 cut(s)	162, 370, 813
TspGWI	ACGGA	1 cut(s)	735
TspRI	CASTG	2 cut(s)	511, 694
Vha464I	CTTAAG	1 cut(s)	554
VpaK11BI	GGWCC	1 cut(s)	927
VspI	ATTAAT	1 cut(s)	762
XapI	RAATTY	1 cut(s)	799
XmnI	GAANNNNTTC	2 cut(s)	248, 370
XspI	CTAG	1 cut(s)	606
Zsp2I	ATGCAT	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.