Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010057

Physical Location & Seq

Genomic Coordinates Forward (+)

10073057 .. 10076813

Gene Structure 3757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG121600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGTGGTCTTGGGTTCTCTTACCCAAATCAAGCCCTCTCCACCAATACCAACCACCTCTTTCTCTTCTTCTTCTTCAAATCCTTCCCAGAAGACCCTCTTCACAAGACGAAGAGCCGTACTGCTTGGCCCAACTGCTTTGGTGGCTTCCTTGCTCCATTTCCACAACCCCATTTCATCACAACCTTCAGCAATTGCTCTGCAACAGTTACAAGATGAGCTCCAGCAGGAAGAAGACCGTGCTGTGAATCTTTTCCAGGAAACTTCTCCATCAGTCGTTTACATTAAAGACATTGAGATAGACAAAAGCCTAAAAGGTTCTCCTACTGCAGTCTCGCAAAGTGAGGATGATAATGCTAAAGTTGAAGGAACAGGTTCAGGCTTCATTTGGGATAAGTTTGGTCACATTGTCACAAATTACCATGTTGTAGCTAAATTGGCTACAGATCAAACCGGATTACAGCGTTGTAAGGTTTATATGGTTGATGCAATGGGCAATGGTTTTAGCAGTGAAGGCAAGATTGTTGGTTTAGATGCATCTCGTGATCTGGCTGTTCTTAAGGTTGATATTGAAGGACATGAGCTAAAACCTGTTGTTCTCGGTACATCTAGTGATTTGCGTGTGGGTCAGACGTGCTTCGCCATTGGAAATCCATATGGATATGAGAACACACTAACAATCGGGGTGGTCAGTGGATTAGGCAGGGAGATACCCTCACCAGATGGAAATGCCATTAAAGGAGCTATTCAAACTGACGCCGCTATTAATGCTGGGAATTCAGGCGGGCCATTGATTGATTCATATGGTCATGTTATTGGAGTTAATACATCAACGTTCACTCGCAAAGGTAAAGCATGCAGCTTCCATTTGGTGTATGCAGTTCAGGGAACTGACTGGTCGAGAATGAGGACTTTGAGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trypsin_2

Protein Analysis

307

Amino Acids

32.71

Weight (kDa)

6.16

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin	PF00089	124 - 278	1.2e-14	Trypsin
Trypsin_2	PF13365	125 - 274	5.8e-32	Trypsin-like peptidase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18370 AT4G18370 AT4G18370
fragaria_vesca	FvH4_3g05290 FvH4_3g05290 FvH4_3g05290 FvH4_3g05290
malus_domestica	MD05G1281600.v1.1
prunus_persica	Prupe.4G083000_v2.0.a1
pyrus_communis	pycom05g26160
rosa_chinensis	RchiOBHm_Chr5g0014431
rosa_laevigata	RLG00000032109
rosa_multiflora	Rmu_sc0031709.1_g000001 Rmu_ssc0000422.1_g000034
rosa_roxburghii	Rroxscaffold_1G00062130
rosa_rugosa	Rorug05G0018300
rosa_samantha	Rh5AG113100 Rh5BG109900 Rh5CG121600 Rh5DG108900
rosa_wichuraiana	Rw5G009810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	759, 783
AclI	AACGTT	1 cut(s)	833
AcsI	RAATTY	1 cut(s)	775
AcuI	CTGAAG	1 cut(s)	171
AcyI	GRCGYC	1 cut(s)	756
AfaI	GTAC	2 cut(s)	120, 604
AflII	CTTAAG	1 cut(s)	557
AgsI	TTSAA	4 cut(s)	78, 365, 572, 749
AjiI	CACGTC	1 cut(s)	633
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	5 cut(s)	220, 431, 583, 743, 861
AluI	AGCT	5 cut(s)	220, 431, 583, 743, 861
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	337
AoxI	GGCC	2 cut(s)	127, 785
ApeKI	GCWGC	1 cut(s)	858
ApoI	RAATTY	1 cut(s)	775
AseI	ATTAAT	1 cut(s)	765
Asp700I	GAANNNNTTC	2 cut(s)	251, 373
AspS9I	GGNCC	2 cut(s)	128, 785
AsuHPI	GGTGA	1 cut(s)	708
BanII	GRGCYC	1 cut(s)	222
BauI	CACGAG	1 cut(s)	540
BbsI	GAAGAC	2 cut(s)	98, 240
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	870
BccI	CCATC	2 cut(s)	277, 716
BceAI	ACGGC	1 cut(s)	101
BciT130I	CCWGG	1 cut(s)	257
BcoDI	GTCTC	1 cut(s)	337
BfaI	CTAG	1 cut(s)	609
BfmI	CTRYAG	2 cut(s)	327, 441
BfrI	CTTAAG	1 cut(s)	557
BisI	GCNGC	2 cut(s)	759, 859
BlsI	GCNGC	2 cut(s)	760, 860
Bme1390I	CCNGG	1 cut(s)	257
BmgBI	CACGTC	1 cut(s)	633
BmgT120I	GGNCC	2 cut(s)	128, 785
BmrFI	CCNGG	1 cut(s)	257
BmsI	GCATC	3 cut(s)	475, 523, 545
BpiI	GAAGAC	2 cut(s)	98, 240
BplI	GAGNNNNNCTC	2 cut(s)	698, 730
BpmI	CTGGAG	1 cut(s)	206
BsaHI	GRCGYC	1 cut(s)	756
BsaWI	WCCGGW	1 cut(s)	452
Bse1I	ACTGG	1 cut(s)	899
Bse3DI	GCAATG	2 cut(s)	495, 502
BseBI	CCWGG	1 cut(s)	257
BseGI	GGATG	1 cut(s)	352
BseMI	GCAATG	2 cut(s)	495, 502
BseNI	ACTGG	1 cut(s)	899
BseXI	GCAGC	1 cut(s)	870
BseYI	CCCAGC	1 cut(s)	770
BshFI	GGCC	2 cut(s)	129, 787
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	453
BsmAI	GTCTC	1 cut(s)	337
BsnI	GGCC	2 cut(s)	129, 787
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	445, 544
BspACI	CCGC	2 cut(s)	759, 783
BspANI	GGCC	2 cut(s)	129, 787
BspMAI	CTGCAG	1 cut(s)	331
BspQI	GCTCTTC	1 cut(s)	106
BspTI	CTTAAG	1 cut(s)	557
BsrDI	GCAATG	2 cut(s)	495, 502
BsrI	ACTGG	1 cut(s)	899
BssMI	GATC	2 cut(s)	445, 544
BssNI	GRCGYC	1 cut(s)	756
BssSI	CACGAG	1 cut(s)	540
Bst2BI	CACGAG	1 cut(s)	540
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	2 cut(s)	207, 239
Bst6I	CTCTTC	3 cut(s)	70, 104, 106
BstACI	GRCGYC	1 cut(s)	756
BstAFI	CTTAAG	1 cut(s)	557
BstC8I	GCNNGC	2 cut(s)	785, 856
BstF5I	GGATG	1 cut(s)	352
BstKTI	GATC	2 cut(s)	448, 547
BstMAI	GTCTC	1 cut(s)	337
BstMBI	GATC	2 cut(s)	445, 544
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 437, 513, 767
BstNI	CCWGG	1 cut(s)	257
BstNSI	RCATGY	1 cut(s)	858
BstSCI	CCNGG	1 cut(s)	255
BstSFI	CTRYAG	2 cut(s)	327, 441
BstV1I	GCAGC	1 cut(s)	870
BstV2I	GAAGAC	2 cut(s)	98, 240
BsuRI	GGCC	2 cut(s)	129, 787
BtrI	CACGTC	1 cut(s)	633
BtsCI	GGATG	1 cut(s)	352
BtsI	GCAGTG	1 cut(s)	514
BtsIMutI	CAGTG	2 cut(s)	514, 697
Cac8I	GCNNGC	2 cut(s)	785, 856
Cfr13I	GGNCC	2 cut(s)	128, 785
CseI	GACGC	1 cut(s)	764
Csp6I	GTAC	2 cut(s)	119, 603
CspCI	CAANNNNNGTGG	2 cut(s)	666, 701
CviAII	CATG	4 cut(s)	422, 578, 809, 855
CviQI	GTAC	2 cut(s)	119, 603
DpnI	GATC	2 cut(s)	447, 546
DpnII	GATC	2 cut(s)	445, 544
Eam1104I	CTCTTC	3 cut(s)	70, 104, 106
EarI	CTCTTC	3 cut(s)	70, 104, 106
Ecl136II	GAGCTC	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	222
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	171
EcoICRI	GAGCTC	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	775
EcoRII	CCWGG	1 cut(s)	255
EcoT22I	ATGCAT	1 cut(s)	538
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	4 cut(s)	425, 581, 812, 858
FalI	AAGNNNNNCTT	2 cut(s)	83, 115
FatI	CATG	4 cut(s)	421, 577, 808, 854
FauI	CCCGC	1 cut(s)	776
FauNDI	CATATG	2 cut(s)	655, 802
Fnu4HI	GCNGC	2 cut(s)	759, 859
FokI	GGATG	1 cut(s)	359
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	2 cut(s)	759, 859
FspBI	CTAG	1 cut(s)	609
GluI	GCNGC	2 cut(s)	759, 859
GsaI	CCCAGC	1 cut(s)	774
GsuI	CTGGAG	1 cut(s)	206
HaeIII	GGCC	2 cut(s)	129, 787
HapII	CCGG	1 cut(s)	453
HgaI	GACGC	1 cut(s)	764
Hin1I	GRCGYC	1 cut(s)	756
Hin1II	CATG	4 cut(s)	425, 581, 812, 858
HinfI	GANTC	2 cut(s)	247, 797
HpaII	CCGG	1 cut(s)	453
HphI	GGTGA	1 cut(s)	708
Hpy166II	GTNNAC	2 cut(s)	280, 837
Hpy188I	TCNGA	2 cut(s)	630, 923
Hpy188III	TCNNGA	2 cut(s)	542, 900
Hpy8I	GTNNAC	2 cut(s)	280, 837
HpyAV	CCTTC	5 cut(s)	93, 195, 359, 506, 566
HpyCH4III	ACNGT	2 cut(s)	207, 239
HpyCH4IV	ACGT	2 cut(s)	632, 833
HpyCH4V	TGCA	6 cut(s)	202, 329, 488, 536, 858, 878
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 437, 513, 767
HpySE526I	ACGT	2 cut(s)	632, 833
Hsp92I	GRCGYC	1 cut(s)	756
Hsp92II	CATG	4 cut(s)	425, 581, 812, 858
Kzo9I	GATC	2 cut(s)	445, 544
LguI	GCTCTTC	1 cut(s)	106
LmnI	GCTCC	3 cut(s)	159, 225, 740
Lsp1109I	GCAGC	1 cut(s)	870
LweI	GCATC	3 cut(s)	475, 523, 545
MaeI	CTAG	1 cut(s)	609
MaeII	ACGT	2 cut(s)	632, 833
MaeIII	GTNAC	3 cut(s)	207, 401, 409
MalI	GATC	2 cut(s)	447, 546
MboI	GATC	2 cut(s)	445, 544
MboII	GAAGA	9 cut(s)	57, 60, 63, 66, 91, 103, 123, 242, 245
MfeI	CAATTG	1 cut(s)	192
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	4 cut(s)	192, 415, 434, 775
MnlI	CCTC	6 cut(s)	46, 67, 107, 337, 724, 900
Mph1103I	ATGCAT	1 cut(s)	538
MroXI	GAANNNNTTC	2 cut(s)	251, 373
MseI	TTAA	5 cut(s)	285, 558, 735, 765, 822
MspCI	CTTAAG	1 cut(s)	557
MspI	CCGG	1 cut(s)	453
MspR9I	CCNGG	1 cut(s)	257
MunI	CAATTG	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	4 cut(s)	143, 437, 513, 767
NdeI	CATATG	2 cut(s)	655, 802
NdeII	GATC	2 cut(s)	445, 544
NlaIII	CATG	4 cut(s)	425, 581, 812, 858
NmuCI	GTSAC	2 cut(s)	401, 409
NsiI	ATGCAT	1 cut(s)	538
NspI	RCATGY	1 cut(s)	858
PaeI	GCATGC	1 cut(s)	858
PciSI	GCTCTTC	1 cut(s)	106
PdmI	GAANNNNTTC	2 cut(s)	251, 373
PfeI	GAWTC	2 cut(s)	247, 797
PfoI	TCCNGGA	1 cut(s)	255
PkrI	GCNGC	2 cut(s)	760, 860
PshBI	ATTAAT	1 cut(s)	765
Psp124BI	GAGCTC	1 cut(s)	222
Psp1406I	AACGTT	1 cut(s)	833
Psp6I	CCWGG	1 cut(s)	255
PspFI	CCCAGC	1 cut(s)	770
PspGI	CCWGG	1 cut(s)	255
PspPI	GGNCC	2 cut(s)	128, 785
PstI	CTGCAG	1 cut(s)	331
RsaI	GTAC	2 cut(s)	120, 604
RsaNI	GTAC	2 cut(s)	119, 603
SacI	GAGCTC	1 cut(s)	222
SapI	GCTCTTC	1 cut(s)	106
SaqAI	TTAA	5 cut(s)	285, 558, 735, 765, 822
SatI	GCNGC	2 cut(s)	759, 859
Sau3AI	GATC	2 cut(s)	445, 544
Sau96I	GGNCC	2 cut(s)	128, 785
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	222
SfaNI	GCATC	3 cut(s)	475, 523, 545
SfcI	CTRYAG	2 cut(s)	327, 441
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
SphI	GCATGC	1 cut(s)	858
Sse9I	AATT	4 cut(s)	192, 415, 434, 775
SsiI	CCGC	2 cut(s)	759, 783
SspMI	CTAG	1 cut(s)	609
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	255
TaaI	ACNGT	2 cut(s)	207, 239
TaiI	ACGT	2 cut(s)	635, 836
TaqI	TCGA	1 cut(s)	899
TasI	AATT	4 cut(s)	192, 415, 434, 775
TauI	GCSGC	1 cut(s)	761
TfiI	GAWTC	2 cut(s)	247, 797
Tru1I	TTAA	5 cut(s)	285, 558, 735, 765, 822
Tru9I	TTAA	5 cut(s)	285, 558, 735, 765, 822
TscAI	CASTG	2 cut(s)	514, 697
TseFI	GTSAC	2 cut(s)	401, 409
TseI	GCWGC	1 cut(s)	858
Tsp45I	GTSAC	2 cut(s)	401, 409
TspDTI	ATGAA	3 cut(s)	165, 373, 789
TspRI	CASTG	2 cut(s)	514, 697
Vha464I	CTTAAG	1 cut(s)	557
VspI	ATTAAT	1 cut(s)	765
XapI	RAATTY	1 cut(s)	775
XceI	RCATGY	1 cut(s)	858
XmnI	GAANNNNTTC	2 cut(s)	251, 373
XspI	CTAG	1 cut(s)	609
Zsp2I	ATGCAT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.