Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010057

Physical Location & Seq

Genomic Coordinates Forward (+)

11053128 .. 11056334

Gene Structure 3207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032109

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGTGGTCTTGGGTTCTCTTAGCCAAATCAAGCCCTCCCCACCAATACCAACCACCTTTTCTTCTTCTTCTTCTTCTTCAAATCCTTCCCAGAAGGCCCTTCTCACAAAACGAAGAGCTCTACTGCTTGGCCCAACTGCTTTGGTGGCTTCCTTGCTCCATTTCTACAGCCCCATTTCATCACAACCTTCTGCAATTGCTCTGCAACAGTTACAAGATGAGCTCCAGCAGGAAGAAGACCGTGCTGTGAATCTCTTCCAGGAAACTTCTCCATCAGTCGTTTACATTAAAGACATTGAGATAGACAAAAGCCTAAAAGGTTCTCCTACTGCAGTCTCACAAAGTGAGGATGATAATTCTAAAGTTGAAGGAACAGGTTCAGGCTTCATTTGGGATAAGTTTGGTCACATTGTCACAAATTACCATGTTGTAGCTAAATTGGCTACAGATCAAACCGGATTACAGCGTTGTAAGGTTTATATGGTTGATGCAAGGGGCAATGGTTTTAGCAGTGAAGGCAAGATTGTTGGTTTAGATGCATCTCACGATCTGGCTGTTCTTAAGGTTGATATTGAAGGACATGAGCTAAAACCTGTTGTTCTCGGTACATCTAGTGATTTGCGTGTGGGTCAGACGTGCTTCGCCATTGGAAATCCATATGGATATGAGAACACACTAACAATCGGGGTGGTCAGTGGATTAGGCAGGGAGATACCCTCACCAGACGGAAAGGCCATTAAGGGAGCTATTCAAACTGACGCTGCTATTAATGCTGGGAATTCAGGCGGGCCATTGATTGATTCATATGGTCATGTTATTGGAGTTAATACATCAACGTTCACTCGGAAAGGGTCAGGAACATCATCTGGTGTCAACTTCGCAATACCAGTAGACTCTGTTGTGCGAACTGTACCTTATCTTATTGTATATGGAACGCCTTATAGTAACAGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trypsin_2

Protein Analysis

319

Amino Acids

33.64

Weight (kDa)

6.08

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin_2	PF13365	126 - 275	1.7e-32	Trypsin-like peptidase domain
Trypsin	PF00089	126 - 301	4.3e-16	Trypsin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18370 AT4G18370 AT4G18370
fragaria_vesca	FvH4_3g05290 FvH4_3g05290 FvH4_3g05290 FvH4_3g05290
malus_domestica	MD05G1281600.v1.1
prunus_persica	Prupe.4G083000_v2.0.a1
pyrus_communis	pycom05g26160
rosa_chinensis	RchiOBHm_Chr5g0014431
rosa_laevigata	RLG00000032109
rosa_multiflora	Rmu_sc0031709.1_g000001 Rmu_ssc0000422.1_g000034
rosa_roxburghii	Rroxscaffold_1G00062130
rosa_rugosa	Rorug05G0018300
rosa_samantha	Rh5AG113100 Rh5BG109900 Rh5CG121600 Rh5DG108900
rosa_wichuraiana	Rw5G009810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	891
AciI	CCGC	1 cut(s)	786
AclI	AACGTT	1 cut(s)	836
AcsI	RAATTY	1 cut(s)	778
AdeI	CACNNNGTG	1 cut(s)	344
AfaI	GTAC	2 cut(s)	607, 912
AflII	CTTAAG	1 cut(s)	560
AgsI	TTSAA	4 cut(s)	81, 368, 575, 752
AjiI	CACGTC	1 cut(s)	636
AjnI	CCWGG	1 cut(s)	258
AjuI	GAANNNNNNNTTGG	2 cut(s)	43, 75
AluBI	AGCT	5 cut(s)	119, 223, 434, 586, 746
AluI	AGCT	5 cut(s)	119, 223, 434, 586, 746
Alw21I	GWGCWC	2 cut(s)	121, 225
Alw26I	GTCTC	1 cut(s)	340
AoxI	GGCC	4 cut(s)	96, 130, 732, 788
ApeKI	GCWGC	1 cut(s)	761
ApoI	RAATTY	1 cut(s)	778
AseI	ATTAAT	1 cut(s)	768
Asp700I	GAANNNNTTC	2 cut(s)	254, 376
AspS9I	GGNCC	3 cut(s)	97, 131, 788
AsuHPI	GGTGA	1 cut(s)	711
BanII	GRGCYC	2 cut(s)	121, 225
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	2 cut(s)	121, 225
BbvI	GCAGC	1 cut(s)	748
BccI	CCATC	1 cut(s)	280
BciT130I	CCWGG	1 cut(s)	260
BcoDI	GTCTC	1 cut(s)	340
BfaI	CTAG	1 cut(s)	612
BfmI	CTRYAG	3 cut(s)	166, 330, 444
BfrI	CTTAAG	1 cut(s)	560
BisI	GCNGC	1 cut(s)	762
BlsI	GCNGC	1 cut(s)	763
Bme1390I	CCNGG	1 cut(s)	260
BmgBI	CACGTC	1 cut(s)	636
BmgT120I	GGNCC	3 cut(s)	97, 131, 788
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	3 cut(s)	478, 526, 548
BpiI	GAAGAC	1 cut(s)	243
BplI	GAGNNNNNCTC	2 cut(s)	701, 733
BpmI	CTGGAG	1 cut(s)	209
BsaWI	WCCGGW	1 cut(s)	455
Bse1I	ACTGG	1 cut(s)	887
Bse3DI	GCAATG	1 cut(s)	505
BseBI	CCWGG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	355
BseMI	GCAATG	1 cut(s)	505
BseNI	ACTGG	1 cut(s)	887
BseXI	GCAGC	1 cut(s)	748
BseYI	CCCAGC	1 cut(s)	773
BshFI	GGCC	4 cut(s)	98, 132, 734, 790
BsiHKAI	GWGCWC	2 cut(s)	121, 225
BsiSI	CCGG	1 cut(s)	456
BsmAI	GTCTC	1 cut(s)	340
BsnI	GGCC	4 cut(s)	98, 132, 734, 790
Bsp1286I	GDGCHC	2 cut(s)	121, 225
Bsp143I	GATC	2 cut(s)	448, 547
BspACI	CCGC	1 cut(s)	786
BspANI	GGCC	4 cut(s)	98, 132, 734, 790
BspMAI	CTGCAG	1 cut(s)	334
BspQI	GCTCTTC	1 cut(s)	109
BspTI	CTTAAG	1 cut(s)	560
BsrDI	GCAATG	1 cut(s)	505
BsrI	ACTGG	1 cut(s)	887
BssMI	GATC	2 cut(s)	448, 547
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	3 cut(s)	210, 242, 910
Bst6I	CTCTTC	2 cut(s)	109, 260
BstAFI	CTTAAG	1 cut(s)	560
BstC8I	GCNNGC	1 cut(s)	788
BstDEI	CTNAG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	355
BstKTI	GATC	2 cut(s)	451, 550
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	2 cut(s)	448, 547
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 440, 516, 770
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	3 cut(s)	166, 330, 444
BstV1I	GCAGC	1 cut(s)	748
BstV2I	GAAGAC	1 cut(s)	243
BsuRI	GGCC	4 cut(s)	98, 132, 734, 790
BtrI	CACGTC	1 cut(s)	636
BtsCI	GGATG	1 cut(s)	355
BtsI	GCAGTG	1 cut(s)	517
BtsIMutI	CAGTG	2 cut(s)	517, 700
Cac8I	GCNNGC	1 cut(s)	788
Cfr13I	GGNCC	3 cut(s)	97, 131, 788
CseI	GACGC	1 cut(s)	767
Csp6I	GTAC	2 cut(s)	606, 911
CspCI	CAANNNNNGTGG	2 cut(s)	669, 704
CviAII	CATG	3 cut(s)	425, 581, 812
CviQI	GTAC	2 cut(s)	606, 911
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	2 cut(s)	450, 549
DpnII	GATC	2 cut(s)	448, 547
DraIII	CACNNNGTG	1 cut(s)	344
Eam1104I	CTCTTC	2 cut(s)	109, 260
EarI	CTCTTC	2 cut(s)	109, 260
Ecl136II	GAGCTC	2 cut(s)	119, 223
Eco24I	GRGCYC	2 cut(s)	121, 225
Eco53kI	GAGCTC	2 cut(s)	119, 223
EcoICRI	GAGCTC	2 cut(s)	119, 223
EcoO109I	RGGNCCY	1 cut(s)	97
EcoRI	GAATTC	1 cut(s)	778
EcoRII	CCWGG	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	541
EcoT38I	GRGCYC	2 cut(s)	121, 225
FaeI	CATG	3 cut(s)	428, 584, 815
FatI	CATG	3 cut(s)	424, 580, 811
FauI	CCCGC	1 cut(s)	779
FauNDI	CATATG	2 cut(s)	658, 805
FblI	GTMKAC	1 cut(s)	891
Fnu4HI	GCNGC	1 cut(s)	762
FokI	GGATG	1 cut(s)	362
FriOI	GRGCYC	2 cut(s)	121, 225
Fsp4HI	GCNGC	1 cut(s)	762
FspBI	CTAG	1 cut(s)	612
GluI	GCNGC	1 cut(s)	762
GsaI	CCCAGC	1 cut(s)	777
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	4 cut(s)	98, 132, 734, 790
HapII	CCGG	1 cut(s)	456
HgaI	GACGC	1 cut(s)	767
Hin1II	CATG	3 cut(s)	428, 584, 815
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HinfI	GANTC	3 cut(s)	250, 800, 893
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	1 cut(s)	711
Hpy166II	GTNNAC	4 cut(s)	283, 840, 874, 892
Hpy188I	TCNGA	2 cut(s)	633, 846
Hpy188III	TCNNGA	2 cut(s)	545, 855
Hpy8I	GTNNAC	4 cut(s)	283, 840, 874, 892
HpyAV	CCTTC	7 cut(s)	88, 96, 110, 198, 362, 509, 569
HpyCH4III	ACNGT	3 cut(s)	210, 242, 910
HpyCH4IV	ACGT	2 cut(s)	635, 836
HpyCH4V	TGCA	5 cut(s)	194, 205, 332, 491, 539
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 440, 516, 770
HpyF3I	CTNAG	1 cut(s)	20
HpySE526I	ACGT	2 cut(s)	635, 836
Hsp92II	CATG	3 cut(s)	428, 584, 815
Kzo9I	GATC	2 cut(s)	448, 547
LguI	GCTCTTC	1 cut(s)	109
LmnI	GCTCC	3 cut(s)	162, 228, 743
Lsp1109I	GCAGC	1 cut(s)	748
LweI	GCATC	3 cut(s)	478, 526, 548
MaeI	CTAG	1 cut(s)	612
MaeII	ACGT	2 cut(s)	635, 836
MaeIII	GTNAC	4 cut(s)	210, 404, 412, 944
MalI	GATC	2 cut(s)	450, 549
MboI	GATC	2 cut(s)	448, 547
MfeI	CAATTG	1 cut(s)	195
MhlI	GDGCHC	2 cut(s)	121, 225
MluCI	AATT	5 cut(s)	195, 355, 418, 437, 778
MlyI	GAGTC	1 cut(s)	887
MnlI	CCTC	3 cut(s)	46, 340, 727
Mph1103I	ATGCAT	1 cut(s)	541
MroXI	GAANNNNTTC	2 cut(s)	254, 376
MseI	TTAA	5 cut(s)	288, 561, 738, 768, 825
MspCI	CTTAAG	1 cut(s)	560
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	1 cut(s)	260
MunI	CAATTG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	4 cut(s)	146, 440, 516, 770
NdeI	CATATG	2 cut(s)	658, 805
NdeII	GATC	2 cut(s)	448, 547
NlaIII	CATG	3 cut(s)	428, 584, 815
NmuCI	GTSAC	2 cut(s)	404, 412
NsiI	ATGCAT	1 cut(s)	541
PciSI	GCTCTTC	1 cut(s)	109
PdmI	GAANNNNTTC	2 cut(s)	254, 376
PfeI	GAWTC	2 cut(s)	250, 800
PfoI	TCCNGGA	1 cut(s)	258
PkrI	GCNGC	1 cut(s)	763
PleI	GAGTC	1 cut(s)	887
PpsI	GAGTC	1 cut(s)	887
PshBI	ATTAAT	1 cut(s)	768
Psp124BI	GAGCTC	2 cut(s)	121, 225
Psp1406I	AACGTT	1 cut(s)	836
Psp6I	CCWGG	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	773
PspGI	CCWGG	1 cut(s)	258
PspPI	GGNCC	3 cut(s)	97, 131, 788
PstI	CTGCAG	1 cut(s)	334
RsaI	GTAC	2 cut(s)	607, 912
RsaNI	GTAC	2 cut(s)	606, 911
SacI	GAGCTC	2 cut(s)	121, 225
SapI	GCTCTTC	1 cut(s)	109
SaqAI	TTAA	5 cut(s)	288, 561, 738, 768, 825
SatI	GCNGC	1 cut(s)	762
Sau3AI	GATC	2 cut(s)	448, 547
Sau96I	GGNCC	3 cut(s)	97, 131, 788
SchI	GAGTC	1 cut(s)	887
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	2 cut(s)	121, 225
SfaNI	GCATC	3 cut(s)	478, 526, 548
SfcI	CTRYAG	3 cut(s)	166, 330, 444
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	5 cut(s)	195, 355, 418, 437, 778
SsiI	CCGC	1 cut(s)	786
SspMI	CTAG	1 cut(s)	612
SstI	GAGCTC	2 cut(s)	121, 225
StyD4I	CCNGG	1 cut(s)	258
TaaI	ACNGT	3 cut(s)	210, 242, 910
TaiI	ACGT	2 cut(s)	638, 839
TasI	AATT	5 cut(s)	195, 355, 418, 437, 778
TfiI	GAWTC	2 cut(s)	250, 800
Tru1I	TTAA	5 cut(s)	288, 561, 738, 768, 825
Tru9I	TTAA	5 cut(s)	288, 561, 738, 768, 825
TscAI	CASTG	2 cut(s)	517, 700
TseFI	GTSAC	2 cut(s)	404, 412
TseI	GCWGC	1 cut(s)	761
Tsp45I	GTSAC	2 cut(s)	404, 412
TspDTI	ATGAA	3 cut(s)	168, 376, 792
TspGWI	ACGGA	1 cut(s)	741
TspRI	CASTG	2 cut(s)	517, 700
Vha464I	CTTAAG	1 cut(s)	560
VspI	ATTAAT	1 cut(s)	768
XapI	RAATTY	1 cut(s)	778
XmiI	GTMKAC	1 cut(s)	891
XmnI	GAANNNNTTC	2 cut(s)	254, 376
XspI	CTAG	1 cut(s)	612
Zsp2I	ATGCAT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.