Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010057

Physical Location & Seq

Genomic Coordinates Reverse (-)

3086580 .. 3089816

Gene Structure 3237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g05290.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGTTGTGTTTGGTTCTCTTACCCAAATCAAGCTCCCTCCACCAATACCAACAACCTCTTCTTCTTCAGGTCCTTCCCAGAAGACCCTTCTCACAAAACGAAGATCCCTACTGCTTGGCCCAACTGCTGTGGTGGCTTCCTTGCTCCATTTCTATAACCCCATTTCATCACAACCTTCAGCAATTGCTCAGCAGCAGCTACAAGATGACCTTCAGCAGGAAGAAGACCGTGCTATGAATCTCTTCCAGGAAACTTCTCCATCAGTCGTTTTCATTAAAGACATTGAGATAGACAAAAGCCTCAAAGGTTCTCCTAACGCTGTCTCGCAAAGTGAGGATGATAATACTAAAGTTGAAGGAACAGGTTCAGGCTTCATTTGGGATAAGTTTGGTCACATTGTCACAAATTACCATGTAATATCTAGATTGGCTACAGATCAAACCGGATTACAGCGTTGTAAGGTTTATATGGTTGATGCAAGGGGCAATGGTTTTAGCAGTGAAGGCAAAATTGTTGGTTTAGATGCATCTCGTGATCTGGCTGTTCTAAAGGTTGATATTGAAGGACATGAGCTAAAACCTGTTGTTCTTGGTACATCAAGTGACTTGCGTGTGGGTCAGACGTGCTTCGCCATTGGAAATCCATATGGATATGAGAACACACTAACAACCGGGGTGGTCAGTGGATTAGGCAGAGAGATACCCTCACCAGATGGAAAAGCGATTAAAGGAGCTATTCAAACTGATGCTGCTATTAATGCTGGGAATTCGGGCGGGCCATTGATCAATTCATATGGTCGTGTTATTGGAGTTAATACATCAACCTTCACTCGCAAAGGGTCAGGAACATCATCTGGAGTTAACTTTGCAATACCAATAGACTCCGTTGTGCGAACTGTTCCTTACCTTATTGTATATGGAACCCCTTATAGTAACAGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trypsin_2

Protein Analysis

315

Amino Acids

33.45

Weight (kDa)

6.91

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin_2	PF13365	122 - 256	5e-23	Trypsin-like peptidase domain
Trypsin	PF00089	122 - 255	3.7e-06	Trypsin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18370 AT4G18370 AT4G18370
fragaria_vesca	FvH4_3g05290 FvH4_3g05290 FvH4_3g05290 FvH4_3g05290
malus_domestica	MD05G1281600.v1.1
prunus_persica	Prupe.4G083000_v2.0.a1
pyrus_communis	pycom05g26160
rosa_chinensis	RchiOBHm_Chr5g0014431
rosa_laevigata	RLG00000032109
rosa_multiflora	Rmu_sc0031709.1_g000001 Rmu_ssc0000422.1_g000034
rosa_roxburghii	Rroxscaffold_1G00062130
rosa_rugosa	Rorug05G0018300
rosa_samantha	Rh5AG113100 Rh5BG109900 Rh5CG121600 Rh5DG108900
rosa_wichuraiana	Rw5G009810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	774
AclWI	GGATC	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	766
AcuI	CTGAAG	3 cut(s)	51, 162, 197
AfaI	GTAC	1 cut(s)	595
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	3 cut(s)	356, 563, 740
AjiI	CACGTC	1 cut(s)	624
AjnI	CCWGG	1 cut(s)	246
AjuI	GAANNNNNNNTTGG	2 cut(s)	43, 75
AluBI	AGCT	4 cut(s)	34, 199, 574, 734
AluI	AGCT	4 cut(s)	34, 199, 574, 734
Alw26I	GTCTC	1 cut(s)	328
AlwI	GGATC	1 cut(s)	99
AlwNI	CAGNNNCTG	1 cut(s)	942
AoxI	GGCC	2 cut(s)	118, 776
ApeKI	GCWGC	3 cut(s)	193, 196, 749
ApoI	RAATTY	1 cut(s)	766
AseI	ATTAAT	1 cut(s)	756
Asp700I	GAANNNNTTC	2 cut(s)	242, 364
AspS9I	GGNCC	3 cut(s)	71, 119, 776
AsuC2I	CCSGG	1 cut(s)	673
AsuHPI	GGTGA	1 cut(s)	699
AvaII	GGWCC	1 cut(s)	71
BauI	CACGAG	1 cut(s)	531
BbsI	GAAGAC	2 cut(s)	89, 231
BbvI	GCAGC	3 cut(s)	205, 208, 736
BccI	CCATC	2 cut(s)	268, 707
BciT130I	CCWGG	1 cut(s)	248
BclI	TGATCA	1 cut(s)	783
BcnI	CCSGG	1 cut(s)	673
BcoDI	GTCTC	1 cut(s)	328
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	432
BisI	GCNGC	3 cut(s)	194, 197, 750
BlpI	GCTNAGC	1 cut(s)	189
BlsI	GCNGC	3 cut(s)	195, 198, 751
Bme1390I	CCNGG	2 cut(s)	248, 673
Bme18I	GGWCC	1 cut(s)	71
BmgBI	CACGTC	1 cut(s)	624
BmgT120I	GGNCC	3 cut(s)	71, 119, 776
BmiI	GGNNCC	1 cut(s)	922
BmrFI	CCNGG	2 cut(s)	248, 673
BmsI	GCATC	4 cut(s)	466, 514, 536, 736
BpiI	GAAGAC	2 cut(s)	89, 231
BplI	GAGNNNNNCTC	2 cut(s)	689, 721
BpmI	CTGGAG	1 cut(s)	876
Bpu1102I	GCTNAGC	1 cut(s)	189
BpuMI	CCSGG	1 cut(s)	673
BsaJI	CCNNGG	1 cut(s)	672
BsaWI	WCCGGW	1 cut(s)	443
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	672
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMI	GCAATG	1 cut(s)	493
BseMII	CTCAG	1 cut(s)	203
BseXI	GCAGC	3 cut(s)	205, 208, 736
BseYI	CCCAGC	1 cut(s)	761
BshFI	GGCC	2 cut(s)	120, 778
BsiSI	CCGG	2 cut(s)	444, 672
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	328
BsnI	GGCC	2 cut(s)	120, 778
Bsp143I	GATC	4 cut(s)	104, 436, 535, 783
Bsp1720I	GCTNAGC	1 cut(s)	189
BspACI	CCGC	1 cut(s)	774
BspANI	GGCC	2 cut(s)	120, 778
BspCNI	CTCAG	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	922
BspPI	GGATC	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	493
BssECI	CCNNGG	1 cut(s)	672
BssMI	GATC	4 cut(s)	104, 436, 535, 783
BssSI	CACGAG	1 cut(s)	531
Bst2BI	CACGAG	1 cut(s)	531
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	2 cut(s)	230, 898
Bst6I	CTCTTC	2 cut(s)	64, 248
BstC8I	GCNNGC	1 cut(s)	776
BstDEI	CTNAG	1 cut(s)	189
BstENI	CCTNNNNNAGG	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	343
BstKTI	GATC	4 cut(s)	107, 439, 538, 786
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	4 cut(s)	104, 436, 535, 783
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 504, 758
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	2 cut(s)	246, 671
BstSFI	CTRYAG	1 cut(s)	432
BstV1I	GCAGC	3 cut(s)	205, 208, 736
BstV2I	GAAGAC	2 cut(s)	89, 231
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuRI	GGCC	2 cut(s)	120, 778
BtrI	CACGTC	1 cut(s)	624
BtsCI	GGATG	1 cut(s)	343
BtsI	GCAGTG	1 cut(s)	505
BtsIMutI	CAGTG	2 cut(s)	505, 688
Cac8I	GCNNGC	1 cut(s)	776
CaiI	CAGNNNCTG	1 cut(s)	942
Cfr13I	GGNCC	3 cut(s)	71, 119, 776
Csp6I	GTAC	1 cut(s)	594
CspCI	CAANNNNNGTGG	4 cut(s)	111, 146, 657, 692
CviAII	CATG	2 cut(s)	413, 569
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	4 cut(s)	106, 438, 537, 785
DpnII	GATC	4 cut(s)	104, 436, 535, 783
Eam1104I	CTCTTC	2 cut(s)	64, 248
EarI	CTCTTC	2 cut(s)	64, 248
Eco47I	GGWCC	1 cut(s)	71
Eco57I	CTGAAG	3 cut(s)	51, 162, 197
EcoNI	CCTNNNNNAGG	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	71
EcoRI	GAATTC	1 cut(s)	766
EcoRII	CCWGG	1 cut(s)	246
EcoT22I	ATGCAT	1 cut(s)	529
FaeI	CATG	2 cut(s)	416, 572
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FatI	CATG	2 cut(s)	412, 568
FauI	CCCGC	1 cut(s)	767
FauNDI	CATATG	2 cut(s)	646, 793
FbaI	TGATCA	1 cut(s)	783
Fnu4HI	GCNGC	3 cut(s)	194, 197, 750
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	3 cut(s)	194, 197, 750
FspBI	CTAG	1 cut(s)	423
GluI	GCNGC	3 cut(s)	194, 197, 750
GsaI	CCCAGC	1 cut(s)	765
GsuI	CTGGAG	1 cut(s)	876
HaeIII	GGCC	2 cut(s)	120, 778
HapII	CCGG	2 cut(s)	444, 672
Hin1II	CATG	2 cut(s)	416, 572
HincII	GTYRAC	1 cut(s)	862
HindII	GTYRAC	1 cut(s)	862
HinfI	GANTC	2 cut(s)	238, 881
HpaI	GTTAAC	1 cut(s)	862
HpaII	CCGG	2 cut(s)	444, 672
HphI	GGTGA	1 cut(s)	699
Hpy166II	GTNNAC	1 cut(s)	862
Hpy188I	TCNGA	2 cut(s)	621, 944
Hpy188III	TCNNGA	4 cut(s)	423, 533, 843, 855
Hpy8I	GTNNAC	1 cut(s)	862
HpyAV	CCTTC	8 cut(s)	84, 98, 186, 221, 350, 497, 557, 835
HpyCH4III	ACNGT	2 cut(s)	230, 898
HpyCH4IV	ACGT	1 cut(s)	623
HpyCH4V	TGCA	3 cut(s)	479, 527, 869
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 504, 758
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	623
Hsp92II	CATG	2 cut(s)	416, 572
Ksp22I	TGATCA	1 cut(s)	783
KspAI	GTTAAC	1 cut(s)	862
Kzo9I	GATC	4 cut(s)	104, 436, 535, 783
LmnI	GCTCC	3 cut(s)	39, 150, 731
Lsp1109I	GCAGC	3 cut(s)	205, 208, 736
LweI	GCATC	4 cut(s)	466, 514, 536, 736
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	1 cut(s)	623
MaeIII	GTNAC	4 cut(s)	392, 400, 602, 932
MalI	GATC	4 cut(s)	106, 438, 537, 785
MboI	GATC	4 cut(s)	104, 436, 535, 783
MboII	GAAGA	8 cut(s)	51, 54, 57, 94, 114, 233, 235, 236
MfeI	CAATTG	1 cut(s)	183
MflI	RGATCY	1 cut(s)	104
MluCI	AATT	5 cut(s)	183, 406, 510, 766, 787
MlyI	GAGTC	1 cut(s)	875
MnlI	CCTC	5 cut(s)	48, 67, 311, 328, 715
Mph1103I	ATGCAT	1 cut(s)	529
MroXI	GAANNNNTTC	2 cut(s)	242, 364
MseI	TTAA	5 cut(s)	276, 726, 756, 813, 861
MspI	CCGG	2 cut(s)	444, 672
MspR9I	CCNGG	2 cut(s)	248, 673
MunI	CAATTG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	3 cut(s)	134, 504, 758
NciI	CCSGG	1 cut(s)	673
NdeI	CATATG	2 cut(s)	646, 793
NdeII	GATC	4 cut(s)	104, 436, 535, 783
NlaIII	CATG	2 cut(s)	416, 572
NlaIV	GGNNCC	1 cut(s)	922
NmuCI	GTSAC	3 cut(s)	392, 400, 602
NsiI	ATGCAT	1 cut(s)	529
PdmI	GAANNNNTTC	2 cut(s)	242, 364
PfeI	GAWTC	1 cut(s)	238
PfoI	TCCNGGA	1 cut(s)	246
PkrI	GCNGC	3 cut(s)	195, 198, 751
PleI	GAGTC	1 cut(s)	875
PpsI	GAGTC	1 cut(s)	875
PpuMI	RGGWCCY	1 cut(s)	71
PshBI	ATTAAT	1 cut(s)	756
Psp5II	RGGWCCY	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	761
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	922
PspPI	GGNCC	3 cut(s)	71, 119, 776
PspPPI	RGGWCCY	1 cut(s)	71
PstNI	CAGNNNCTG	1 cut(s)	942
PsuI	RGATCY	1 cut(s)	104
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
SaqAI	TTAA	5 cut(s)	276, 726, 756, 813, 861
SatI	GCNGC	3 cut(s)	194, 197, 750
Sau3AI	GATC	4 cut(s)	104, 436, 535, 783
Sau96I	GGNCC	3 cut(s)	71, 119, 776
SchI	GAGTC	1 cut(s)	875
ScrFI	CCNGG	2 cut(s)	248, 673
SfaNI	GCATC	4 cut(s)	466, 514, 536, 736
SfcI	CTRYAG	1 cut(s)	432
SinI	GGWCC	1 cut(s)	71
Sse9I	AATT	5 cut(s)	183, 406, 510, 766, 787
SsiI	CCGC	1 cut(s)	774
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	2 cut(s)	246, 671
TaaI	ACNGT	2 cut(s)	230, 898
TaiI	ACGT	1 cut(s)	626
TasI	AATT	5 cut(s)	183, 406, 510, 766, 787
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	5 cut(s)	276, 726, 756, 813, 861
Tru9I	TTAA	5 cut(s)	276, 726, 756, 813, 861
TscAI	CASTG	2 cut(s)	505, 688
TseFI	GTSAC	3 cut(s)	392, 400, 602
TseI	GCWGC	3 cut(s)	193, 196, 749
Tsp45I	GTSAC	3 cut(s)	392, 400, 602
TspDTI	ATGAA	5 cut(s)	156, 251, 262, 364, 780
TspGWI	ACGGA	1 cut(s)	874
TspRI	CASTG	2 cut(s)	505, 688
VpaK11BI	GGWCC	1 cut(s)	71
VspI	ATTAAT	1 cut(s)	756
XagI	CCTNNNNNAGG	1 cut(s)	215
XapI	RAATTY	1 cut(s)	766
XbaI	TCTAGA	1 cut(s)	422
XmnI	GAANNNNTTC	2 cut(s)	242, 364
XspI	CTAG	1 cut(s)	423
Zsp2I	ATGCAT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.