Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031709.1

Orthogroup ID

OG0010057

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1937

Gene Structure 1937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031709.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

gtcacaaattaccatgttgtagctaaattggctacagatcaaactggattacagcgttgtaaggtttatatggttgatgcaatgggcaatgggtttagcagtgaaggcaagattgttggtttagatgcatctcgtgatctggctgttcttaaggttgatattgaaggacatgagctaaaacctgttgttctcggtacatctagtgatttgcgtgtgggtcagacgtgctttgccattggaaatccatatggatatgagaacacactaacaatcggggtggtcagtggattaggcagggagataccctcaccagacggaaatgccattaaaggagctattcaaactgacgccgctattaatgctgggaattcaggcgggccattgattgattcaaatggtcatgttattggagttaatacatcaacgttcactcgcaaagggtcaggaacatcatctggtgttaacttcgcaataccagtagactctgttgtgcgaaccgtaccttaccttattgtatatggaacgccttatagtaacaggttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trypsin_2

Protein Analysis

181

Amino Acids

18.85

Weight (kDa)

6.31

Isoelectric Point (pI)

12.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18370 AT4G18370 AT4G18370
fragaria_vesca	FvH4_3g05290 FvH4_3g05290 FvH4_3g05290 FvH4_3g05290
malus_domestica	MD05G1281600.v1.1
prunus_persica	Prupe.4G083000_v2.0.a1
pyrus_communis	pycom05g26160
rosa_chinensis	RchiOBHm_Chr5g0014431
rosa_laevigata	RLG00000032109
rosa_multiflora	Rmu_sc0031709.1_g000001 Rmu_ssc0000422.1_g000034
rosa_roxburghii	Rroxscaffold_1G00062130
rosa_rugosa	Rorug05G0018300
rosa_samantha	Rh5AG113100 Rh5BG109900 Rh5CG121600 Rh5DG108900
rosa_wichuraiana	Rw5G009810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	480
AciI	CCGC	2 cut(s)	351, 375
AclI	AACGTT	1 cut(s)	425
AcsI	RAATTY	1 cut(s)	367
AcyI	GRCGYC	1 cut(s)	348
AfaI	GTAC	2 cut(s)	196, 501
AflII	CTTAAG	1 cut(s)	149
AgsI	TTSAA	3 cut(s)	164, 341, 393
AjiI	CACGTC	1 cut(s)	225
AluBI	AGCT	3 cut(s)	23, 175, 335
AluI	AGCT	3 cut(s)	23, 175, 335
AoxI	GGCC	1 cut(s)	377
ApoI	RAATTY	1 cut(s)	367
AseI	ATTAAT	1 cut(s)	357
AspS9I	GGNCC	1 cut(s)	377
AsuHPI	GGTGA	1 cut(s)	300
BauI	CACGAG	1 cut(s)	132
BfaI	CTAG	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	33
BfrI	CTTAAG	1 cut(s)	149
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
BmgBI	CACGTC	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	377
BmsI	GCATC	3 cut(s)	67, 115, 137
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BsaHI	GRCGYC	1 cut(s)	348
Bse1I	ACTGG	2 cut(s)	49, 476
Bse3DI	GCAATG	2 cut(s)	87, 94
BseMI	GCAATG	2 cut(s)	87, 94
BseNI	ACTGG	2 cut(s)	49, 476
BseYI	CCCAGC	1 cut(s)	362
BshFI	GGCC	1 cut(s)	379
BsnI	GGCC	1 cut(s)	379
Bsp143I	GATC	2 cut(s)	37, 136
BspACI	CCGC	2 cut(s)	351, 375
BspANI	GGCC	1 cut(s)	379
BspTI	CTTAAG	1 cut(s)	149
BsrDI	GCAATG	2 cut(s)	87, 94
BsrI	ACTGG	2 cut(s)	49, 476
BssMI	GATC	2 cut(s)	37, 136
BssNI	GRCGYC	1 cut(s)	348
BssSI	CACGAG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	499
BstACI	GRCGYC	1 cut(s)	348
BstAFI	CTTAAG	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	377
BstKTI	GATC	2 cut(s)	40, 139
BstMBI	GATC	2 cut(s)	37, 136
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 105, 359
BstSFI	CTRYAG	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	379
BtrI	CACGTC	1 cut(s)	225
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	2 cut(s)	106, 289
Cac8I	GCNNGC	1 cut(s)	377
Cfr13I	GGNCC	1 cut(s)	377
CseI	GACGC	1 cut(s)	356
Csp6I	GTAC	2 cut(s)	195, 500
CspCI	CAANNNNNGTGG	2 cut(s)	258, 293
CviAII	CATG	3 cut(s)	14, 170, 401
CviJI	RGCY	6 cut(s)	23, 32, 143, 175, 335, 379
CviKI_1	RGCY	6 cut(s)	23, 32, 143, 175, 335, 379
CviQI	GTAC	2 cut(s)	195, 500
DpnI	GATC	2 cut(s)	39, 138
DpnII	GATC	2 cut(s)	37, 136
EcoRI	GAATTC	1 cut(s)	367
EcoT22I	ATGCAT	1 cut(s)	130
FaeI	CATG	3 cut(s)	17, 173, 404
FatI	CATG	3 cut(s)	13, 169, 400
FauI	CCCGC	1 cut(s)	368
FauNDI	CATATG	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	1 cut(s)	351
Fsp4HI	GCNGC	1 cut(s)	351
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	1 cut(s)	351
GsaI	CCCAGC	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	379
HgaI	GACGC	1 cut(s)	356
Hin1I	GRCGYC	1 cut(s)	348
Hin1II	CATG	3 cut(s)	17, 173, 404
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	2 cut(s)	389, 482
HpaI	GTTAAC	1 cut(s)	463
HphI	GGTGA	1 cut(s)	300
Hpy166II	GTNNAC	3 cut(s)	429, 463, 481
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	2 cut(s)	134, 444
Hpy8I	GTNNAC	3 cut(s)	429, 463, 481
HpyAV	CCTTC	2 cut(s)	98, 158
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4IV	ACGT	2 cut(s)	224, 425
HpyCH4V	TGCA	2 cut(s)	80, 128
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 105, 359
HpySE526I	ACGT	2 cut(s)	224, 425
Hsp92I	GRCGYC	1 cut(s)	348
Hsp92II	CATG	3 cut(s)	17, 173, 404
KspAI	GTTAAC	1 cut(s)	463
Kzo9I	GATC	2 cut(s)	37, 136
LmnI	GCTCC	1 cut(s)	332
LweI	GCATC	3 cut(s)	67, 115, 137
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	2 cut(s)	224, 425
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	2 cut(s)	39, 138
MboI	GATC	2 cut(s)	37, 136
MluCI	AATT	3 cut(s)	7, 26, 367
MlyI	GAGTC	1 cut(s)	476
MnlI	CCTC	1 cut(s)	316
Mph1103I	ATGCAT	1 cut(s)	130
MseI	TTAA	5 cut(s)	150, 327, 357, 414, 462
MspCI	CTTAAG	1 cut(s)	149
MwoI	GCNNNNNNNGC	3 cut(s)	29, 105, 359
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	2 cut(s)	37, 136
NlaIII	CATG	3 cut(s)	17, 173, 404
NsiI	ATGCAT	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	389
PkrI	GCNGC	1 cut(s)	352
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
PshBI	ATTAAT	1 cut(s)	357
Psp1406I	AACGTT	1 cut(s)	425
PspFI	CCCAGC	1 cut(s)	362
PspPI	GGNCC	1 cut(s)	377
RsaI	GTAC	2 cut(s)	196, 501
RsaNI	GTAC	2 cut(s)	195, 500
SaqAI	TTAA	5 cut(s)	150, 327, 357, 414, 462
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	2 cut(s)	37, 136
Sau96I	GGNCC	1 cut(s)	377
SchI	GAGTC	1 cut(s)	476
SfaNI	GCATC	3 cut(s)	67, 115, 137
SfcI	CTRYAG	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	3 cut(s)	7, 26, 367
SsiI	CCGC	2 cut(s)	351, 375
SspMI	CTAG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	499
TaiI	ACGT	2 cut(s)	227, 428
TasI	AATT	3 cut(s)	7, 26, 367
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	1 cut(s)	389
Tru1I	TTAA	5 cut(s)	150, 327, 357, 414, 462
Tru9I	TTAA	5 cut(s)	150, 327, 357, 414, 462
TscAI	CASTG	2 cut(s)	106, 289
TspGWI	ACGGA	1 cut(s)	330
TspRI	CASTG	2 cut(s)	106, 289
Vha464I	CTTAAG	1 cut(s)	149
VspI	ATTAAT	1 cut(s)	357
XapI	RAATTY	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	480
XspI	CTAG	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.