Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010001

Physical Location & Seq

Genomic Coordinates Reverse (-)

10201672 .. 10203469

Gene Structure 1798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G18480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGCGTCTCTTCTTGGAACATCTTCTTCTGCAATCTGGGCTTCTCCTTCACTCTCTTCTCCTTCCTCAAAACCTTCCTCCTCCCCCATTTGCTTCAGGCCAGGAAAATTGTTTGGAAGCAAGTTAAATGCAGGAATCCAAATAAGGCCAAAGAAGAACAGGTCTCGTTACCATGTTTCGGTTATGAATGTAGCCACTGAAATCAACTCTACTGAACAAGTAGTAGGGAAGTTTGATTCAAAGAAGAGTGCGAGACCGGTTTATCCATTTGCAGCTATAGTAGGGCAAGATGAGATGAAGTTATGTCTTTTGTTGAATGTTATTGATCCAAAGATTGGTGGTGTTATGATTATGGGAGATAGAGGAACTGGAAAATCTACAACTGTTAGATCATTAGTTGATCTGTTACCTGAGATTAATGTAGTTGCAGGTGACCCGTATAACTCGGATCCGATAGATCCTGAGTTTATGGGTGTTGAAGTAAGAGAGAGAGTTGAGAAAGGAGAGCAAGTTCCTGTTATTGCGACTAAGATTAATATGGTTGATCTTCCTTTGGGTGCAACAGAAGATAGAGTTTGTGGAACCATCGATATCGAAAAGGCTTTGACAGAAGGTGTAAAAGCCTTTGAGCCTGGTTTGTTGGCTAAAGCTAATAGAGGGATTCTTTATGTTGATGAAGTTAATCTCTTGGATGATCATTTGGTTGATGTTCTTTTGGATTCAGCTGCTTCTGGTTGGAATACGGTTGAGAGAGAAGGGATTTCGATTTCTCACCCGGCGAGGTTTATCTTGATCGGTTCAGGAAATCCGGAAGAAGGAGAGCTTAGGCCACAGCTTCTTGATCGGTTTGGTATGCATGCACAAGTAGGGACGGTTAGAGATGCTGATTTACGGGTCAAGATTGTTGAAGAGAGAGCTCGTTTCGATAGTAACCCAAAGGATTTCCGTGACACTTACAAAACCGAGCAGGACAAGCTTCAAGACCAGATTTCAACTGCTAGGGCAAACCTTTCCTCGGTTCAGATTGATAGGGAATTGAAGGTGAAGATCTCTAGAGTTTGTTCAGAGCTCAATGTTGATGGGTTGAGAGGAGACATAGTGACTAACAGAGCAGCAAAAGCACTTGCAGCTCTCAAAGGAAAAGATCGAGTAACTCCAGATGATGTTGCAACCGTTATCCCTAACTGCTTAAGGCACCGTCTGAGGAAAGATCCACTGGAATCTATTGATTCAGGAGTTCTAGTTTCCGAGAAGTTCGCCGAGATTTTCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010007 GO:0010033 GO:0015994 GO:0015995 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016851 GO:0016874 GO:0016887 GO:0017111 GO:0018130 GO:0019438 GO:0030312 GO:0032991 GO:0033013 GO:0033014 GO:0034641 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051002 GO:0051003 GO:0051186 GO:0051188 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Mg_chelatase

Protein Analysis

424

Amino Acids

46.27

Weight (kDa)

6.08

Isoelectric Point (pI)

35.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mg_chelatase	PF01078	200 - 270	2.9e-07	Magnesium chelatase, subunit ChlI
AAA_lid_2	PF17863	350 - 408	3.4e-19	AAA lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18480 AT5G45930
fragaria_vesca	FvH4_3g08130 FvH4_3g08130 FvH4_3g08130
malus_domestica	MD05G1304900.v1.1 MD10G1284000.v1.1
prunus_persica	Prupe.4G057500_v2.0.a1
pyrus_communis	pycom05g28220 pycom10g23690
rosa_chinensis	RchiOBHm_Chr5g0010061
rosa_laevigata	RLG00000031723
rosa_multiflora	Rmu_sc0002275.1_g000009 Rmu_sc0016197.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066110
rosa_rugosa	Rorug04G0448900
rosa_samantha	Rh5AG079800 Rh5BG074600 Rh5CG087200 Rh5DG075300
rosa_wichuraiana	Rw5G007390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	419
Acc36I	ACCTGC	1 cut(s)	419
AccB1I	GGYRCC	1 cut(s)	1194
AccB7I	CCANNNNNTGG	1 cut(s)	335
AccIII	TCCGGA	1 cut(s)	808
AclWI	GGATC	5 cut(s)	320, 443, 452, 456, 1205
AcuI	CTGAAG	1 cut(s)	79
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	4 cut(s)	178, 335, 815, 1015
AflII	CTTAAG	1 cut(s)	1189
AgeI	ACCGGT	1 cut(s)	256
AgsI	TTSAA	7 cut(s)	240, 316, 479, 908, 980, 993, 1039
AjnI	CCWGG	2 cut(s)	100, 631
AloI	GAACNNNNNNTCC	2 cut(s)	495, 527
Alw21I	GWGCWC	2 cut(s)	919, 1071
Alw26I	GTCTC	4 cut(s)	12, 168, 247, 1086
AlwI	GGATC	5 cut(s)	320, 443, 452, 456, 1205
Aor13HI	TCCGGA	1 cut(s)	808
AoxI	GGCC	3 cut(s)	98, 146, 827
ApeKI	GCWGC	4 cut(s)	272, 725, 1112, 1127
AseI	ATTAAT	2 cut(s)	417, 534
AsiGI	ACCGGT	1 cut(s)	256
Asp700I	GAANNNNTTC	1 cut(s)	22
AsuC2I	CCSGG	1 cut(s)	776
AsuHPI	GGTGA	3 cut(s)	443, 764, 1054
BamHI	GGATCC	1 cut(s)	448
BanI	GGYRCC	1 cut(s)	1194
BanII	GRGCYC	2 cut(s)	919, 1071
Bbv12I	GWGCWC	2 cut(s)	919, 1071
BbvI	GCAGC	4 cut(s)	284, 712, 1124, 1139
BccI	CCATC	2 cut(s)	593, 1073
BciT130I	CCWGG	2 cut(s)	102, 633
BclI	TGATCA	1 cut(s)	694
BcnI	CCSGG	1 cut(s)	776
BcoDI	GTCTC	4 cut(s)	12, 168, 247, 1086
BfaI	CTAG	3 cut(s)	999, 1053, 1241
BfmI	CTRYAG	1 cut(s)	276
BfrI	CTTAAG	1 cut(s)	1189
BfuAI	ACCTGC	1 cut(s)	419
BglII	AGATCT	1 cut(s)	1047
BisI	GCNGC	4 cut(s)	273, 726, 1113, 1128
BlsI	GCNGC	4 cut(s)	274, 727, 1114, 1129
Bme1390I	CCNGG	3 cut(s)	102, 633, 776
BmiI	GGNNCC	3 cut(s)	450, 583, 1196
BmrFI	CCNGG	3 cut(s)	102, 633, 776
BmsI	GCATC	1 cut(s)	871
BpmI	CTGGAG	1 cut(s)	1140
Bpu10I	CCTNAGC	1 cut(s)	824
BpuMI	CCSGG	1 cut(s)	776
Bsa29I	ATCGAT	1 cut(s)	588
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	2 cut(s)	168, 247
BsaJI	CCNNGG	1 cut(s)	1014
BsaWI	WCCGGW	2 cut(s)	256, 808
BsaXI	ACNNNNNCTCC	6 cut(s)	495, 525, 1083, 1113, 1227, 1257
Bsc4I	CCNNNNNNNGG	4 cut(s)	178, 335, 815, 1015
Bse118I	RCCGGY	1 cut(s)	256
Bse1I	ACTGG	2 cut(s)	373, 1221
BseAI	TCCGGA	1 cut(s)	808
BseBI	CCWGG	2 cut(s)	102, 633
BseCI	ATCGAT	1 cut(s)	588
BseDI	CCNNGG	1 cut(s)	1014
BseGI	GGATG	1 cut(s)	697
BseLI	CCNNNNNNNGG	4 cut(s)	178, 335, 815, 1015
BseMII	CTCAG	3 cut(s)	402, 453, 1193
BseNI	ACTGG	2 cut(s)	373, 1221
BseRI	GAGGAG	2 cut(s)	70, 1104
BseXI	GCAGC	4 cut(s)	284, 712, 1124, 1139
BshFI	GGCC	3 cut(s)	100, 148, 829
BshNI	GGYRCC	1 cut(s)	1194
BshTI	ACCGGT	1 cut(s)	256
BshVI	ATCGAT	1 cut(s)	588
BsiHKAI	GWGCWC	2 cut(s)	919, 1071
BsiSI	CCGG	3 cut(s)	257, 776, 809
BslFI	GGGAC	1 cut(s)	883
BslI	CCNNNNNNNGG	4 cut(s)	178, 335, 815, 1015
BsmAI	GTCTC	4 cut(s)	12, 168, 247, 1086
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	883
BsnI	GGCC	3 cut(s)	100, 148, 829
Bso31I	GGTCTC	2 cut(s)	168, 247
Bsp1286I	GDGCHC	2 cut(s)	919, 1071
Bsp13I	TCCGGA	1 cut(s)	808
BspANI	GGCC	3 cut(s)	100, 148, 829
BspCNI	CTCAG	3 cut(s)	403, 454, 1194
BspDI	ATCGAT	1 cut(s)	588
BspEI	TCCGGA	1 cut(s)	808
BspLI	GGNNCC	3 cut(s)	450, 583, 1196
BspMI	ACCTGC	1 cut(s)	419
BspPI	GGATC	5 cut(s)	320, 443, 452, 456, 1205
BspT107I	GGYRCC	1 cut(s)	1194
BspTI	CTTAAG	1 cut(s)	1189
BspTNI	GGTCTC	2 cut(s)	168, 247
BsrFI	RCCGGY	1 cut(s)	256
BsrI	ACTGG	2 cut(s)	373, 1221
BssAI	RCCGGY	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	1014
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	102, 633
Bst4CI	ACNGT	5 cut(s)	385, 745, 874, 1174, 1199
Bst6I	CTCTTC	4 cut(s)	15, 61, 239, 903
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	1189
BstC8I	GCNNGC	1 cut(s)	858
BstDEI	CTNAG	5 cut(s)	411, 462, 528, 824, 1202
BstEII	GGTNACC	1 cut(s)	431
BstF5I	GGATG	1 cut(s)	697
BstMAI	GTCTC	4 cut(s)	12, 168, 247, 1086
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 973, 1118, 1127
BstNI	CCWGG	2 cut(s)	102, 633
BstNSI	RCATGY	1 cut(s)	860
BstPI	GGTNACC	1 cut(s)	431
BstSCI	CCNGG	3 cut(s)	100, 631, 774
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	4 cut(s)	284, 712, 1124, 1139
BstX2I	RGATCY	4 cut(s)	448, 457, 1047, 1210
BstYI	RGATCY	4 cut(s)	448, 457, 1047, 1210
Bsu15I	ATCGAT	1 cut(s)	588
BsuRI	GGCC	3 cut(s)	100, 148, 829
BsuTUI	ATCGAT	1 cut(s)	588
BtsCI	GGATG	1 cut(s)	697
BtsIMutI	CAGTG	2 cut(s)	195, 1214
BveI	ACCTGC	1 cut(s)	419
Cac8I	GCNNGC	1 cut(s)	858
Cfr10I	RCCGGY	1 cut(s)	256
ClaI	ATCGAT	1 cut(s)	588
CspAI	ACCGGT	1 cut(s)	256
CviAII	CATG	2 cut(s)	173, 857
DdeI	CTNAG	5 cut(s)	411, 462, 528, 824, 1202
Eam1104I	CTCTTC	4 cut(s)	15, 61, 239, 903
EarI	CTCTTC	4 cut(s)	15, 61, 239, 903
Ecl136II	GAGCTC	2 cut(s)	917, 1069
Eco24I	GRGCYC	2 cut(s)	919, 1071
Eco31I	GGTCTC	2 cut(s)	168, 247
Eco32I	GATATC	1 cut(s)	592
Eco53kI	GAGCTC	2 cut(s)	917, 1069
Eco57I	CTGAAG	1 cut(s)	79
Eco91I	GGTNACC	1 cut(s)	431
EcoICRI	GAGCTC	2 cut(s)	917, 1069
EcoO65I	GGTNACC	1 cut(s)	431
EcoRII	CCWGG	2 cut(s)	100, 631
EcoRV	GATATC	1 cut(s)	592
EcoT22I	ATGCAT	1 cut(s)	858
EcoT38I	GRGCYC	2 cut(s)	919, 1071
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	2 cut(s)	176, 860
FalI	AAGNNNNNCTT	2 cut(s)	807, 839
FaqI	GGGAC	1 cut(s)	883
FatI	CATG	2 cut(s)	172, 856
FbaI	TGATCA	1 cut(s)	694
Fnu4HI	GCNGC	4 cut(s)	273, 726, 1113, 1128
FokI	GGATG	1 cut(s)	704
FriOI	GRGCYC	2 cut(s)	919, 1071
Fsp4HI	GCNGC	4 cut(s)	273, 726, 1113, 1128
FspBI	CTAG	3 cut(s)	999, 1053, 1241
GluI	GCNGC	4 cut(s)	273, 726, 1113, 1128
GsuI	CTGGAG	1 cut(s)	1140
HaeIII	GGCC	3 cut(s)	100, 148, 829
HapII	CCGG	3 cut(s)	257, 776, 809
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	176, 860
HindIII	AAGCTT	1 cut(s)	974
HinfI	GANTC	6 cut(s)	135, 236, 661, 719, 1220, 1229
HpaII	CCGG	3 cut(s)	257, 776, 809
HphI	GGTGA	3 cut(s)	443, 764, 1054
Hpy188I	TCNGA	6 cut(s)	448, 453, 1023, 1066, 1203, 1249
HpyAV	CCTTC	7 cut(s)	57, 72, 84, 605, 749, 809, 1033
HpyCH4III	ACNGT	5 cut(s)	385, 745, 874, 1174, 1199
HpyCH4V	TGCA	9 cut(s)	32, 131, 272, 428, 560, 856, 860, 1127, 1169
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 973, 1118, 1127
HpyF3I	CTNAG	5 cut(s)	411, 462, 528, 824, 1202
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	176, 860
Kpn2I	TCCGGA	1 cut(s)	808
Ksp22I	TGATCA	1 cut(s)	694
Lsp1109I	GCAGC	4 cut(s)	284, 712, 1124, 1139
LweI	GCATC	1 cut(s)	871
MaeI	CTAG	3 cut(s)	999, 1053, 1241
MaeIII	GTNAC	7 cut(s)	167, 405, 431, 929, 947, 1099, 1150
MflI	RGATCY	4 cut(s)	448, 457, 1047, 1210
MhlI	GDGCHC	2 cut(s)	919, 1071
MluCI	AATT	2 cut(s)	107, 1034
MmeI	TCCRAC	1 cut(s)	716
MnlI	CCTC	9 cut(s)	76, 88, 91, 356, 650, 774, 1024, 1082, 1197
Mph1103I	ATGCAT	1 cut(s)	858
MroI	TCCGGA	1 cut(s)	808
MroXI	GAANNNNTTC	1 cut(s)	22
MseI	TTAA	5 cut(s)	125, 417, 534, 681, 1190
MspA1I	CMGCKG	2 cut(s)	725, 1272
MspCI	CTTAAG	1 cut(s)	1189
MspI	CCGG	3 cut(s)	257, 776, 809
MspR9I	CCNGG	3 cut(s)	102, 633, 776
MvaI	CCWGG	2 cut(s)	102, 633
MwoI	GCNNNNNNNGC	4 cut(s)	38, 973, 1118, 1127
NciI	CCSGG	1 cut(s)	776
NlaIII	CATG	2 cut(s)	176, 860
NlaIV	GGNNCC	3 cut(s)	450, 583, 1196
NmuCI	GTSAC	3 cut(s)	431, 947, 1099
NsiI	ATGCAT	1 cut(s)	858
NspI	RCATGY	1 cut(s)	860
PaeI	GCATGC	1 cut(s)	860
PaqCI	CACCTGC	1 cut(s)	419
PdmI	GAANNNNTTC	1 cut(s)	22
PfeI	GAWTC	6 cut(s)	135, 236, 661, 719, 1220, 1229
PflMI	CCANNNNNTGG	1 cut(s)	335
PinAI	ACCGGT	1 cut(s)	256
PkrI	GCNGC	4 cut(s)	274, 727, 1114, 1129
PshBI	ATTAAT	2 cut(s)	417, 534
Psp124BI	GAGCTC	2 cut(s)	919, 1071
Psp6I	CCWGG	2 cut(s)	100, 631
PspEI	GGTNACC	1 cut(s)	431
PspGI	CCWGG	2 cut(s)	100, 631
PspN4I	GGNNCC	3 cut(s)	450, 583, 1196
PsuI	RGATCY	4 cut(s)	448, 457, 1047, 1210
PvuII	CAGCTG	2 cut(s)	725, 1272
SacI	GAGCTC	2 cut(s)	919, 1071
SaqAI	TTAA	5 cut(s)	125, 417, 534, 681, 1190
SatI	GCNGC	4 cut(s)	273, 726, 1113, 1128
ScrFI	CCNGG	3 cut(s)	102, 633, 776
SduI	GDGCHC	2 cut(s)	919, 1071
SfaNI	GCATC	1 cut(s)	871
SfcI	CTRYAG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	1189
SmoI	CTYRAG	1 cut(s)	1189
SphI	GCATGC	1 cut(s)	860
Sse9I	AATT	2 cut(s)	107, 1034
SspMI	CTAG	3 cut(s)	999, 1053, 1241
SstI	GAGCTC	2 cut(s)	919, 1071
StyD4I	CCNGG	3 cut(s)	100, 631, 774
TaaI	ACNGT	5 cut(s)	385, 745, 874, 1174, 1199
TaqI	TCGA	5 cut(s)	588, 594, 764, 924, 1147
TasI	AATT	2 cut(s)	107, 1034
TfiI	GAWTC	6 cut(s)	135, 236, 661, 719, 1220, 1229
Tru1I	TTAA	5 cut(s)	125, 417, 534, 681, 1190
Tru9I	TTAA	5 cut(s)	125, 417, 534, 681, 1190
TscAI	CASTG	2 cut(s)	202, 1221
TseFI	GTSAC	3 cut(s)	431, 947, 1099
TseI	GCWGC	4 cut(s)	272, 725, 1112, 1127
Tsp45I	GTSAC	3 cut(s)	431, 947, 1099
TspDTI	ATGAA	3 cut(s)	200, 311, 690
TspGWI	ACGGA	1 cut(s)	935
TspRI	CASTG	2 cut(s)	202, 1221
Van91I	CCANNNNNTGG	1 cut(s)	335
Vha464I	CTTAAG	1 cut(s)	1189
VspI	ATTAAT	2 cut(s)	417, 534
XbaI	TCTAGA	1 cut(s)	1052
XceI	RCATGY	1 cut(s)	860
XmnI	GAANNNNTTC	1 cut(s)	22
XspI	CTAG	3 cut(s)	999, 1053, 1241
Zsp2I	ATGCAT	1 cut(s)	858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.