Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0010001

Physical Location & Seq

Genomic Coordinates Reverse (-)

6817658 .. 6819882

Gene Structure 2225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG079800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAAACTATGTCTTCTGCTGAATGTGATTGATCCCAAGATTGGTGGTGTCATGATCATGGGTGATAGGGGAACCGGGAAATCCACAACTGTTAGGTCTTTGACTGATTTGCTTCCCGAAATTAAGATTGTTGCTGGTGATCCCTACAATTCGGACCCAGAAGATCCAGAGGCCATGGGCCCGGAAGTGAGAGAGAGCATTGTGAAAGGAGTGCAACTTCCTGTGGCGACCACTAAGATCAACATGGTTGATTTACCTTTGGGTGCTACGGAAGATAGAGTGTGTGGGACAATCGACATTGAGAAAGCTCTGACTGAGGGTGTCAAGGCATTTGAGCCGGGACTTCTTGCAAAAGCTAATAGAGGCATTCTTTATGTGGATGAAGTTAATCTTTTGGATGATCATTTAGTGGATGTTCTATTGGATTCTGCTGCCTCTGGATGGAACACAGTGGAGAGGGAGGGTATTTCGATTTCTCATCCTGCAAGGTTCATTTTGATTGGCTCTGGCAATCCAGAAGAAGGGGAGCTCAGGCCGCAGTTGCTTGACCGTTTTGGTATGCATGCTCAAGTTGGGACTGTGAGGGATGCAGAACTGAGAGTGAAGATTGTGGAGGAGAGAGCTCGGTTTGACAAAAACCCAAAAGATTTTCGGGTTTCTTACGAAGCTGAGCAAGATAAGCTTCAGGAACAAATTACCTCAGCTAGAAGTGGTCTTCCATCTGTACAGATTGACCAGGATCTCAAGGTGAAAATCTCCCAGGTTTGTTCAGAGTTGAATGTCGACGGATTGAGAGGAGACATAGTGACTAACAGGGCTGCAAAAGCTTTGGCTGCTCTAAAGGGAAGGGATAAGGTGACTCCAGAAGATATTGCTACTGTCATCCCTAACTGCTTAAGACATCGTCTTCGGAAGGATCCTTTAGAGTCGATTGACTCTGGTTTACTTGTCATTGAGAAATTTTACGAGATCTTCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010007 GO:0010033 GO:0015994 GO:0015995 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016851 GO:0016874 GO:0016887 GO:0017111 GO:0018130 GO:0019438 GO:0030312 GO:0032991 GO:0033013 GO:0033014 GO:0034641 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051002 GO:0051003 GO:0051186 GO:0051188 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Mg_chelatase

Protein Analysis

326

Amino Acids

35.74

Weight (kDa)

5.01

Isoelectric Point (pI)

33.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_22	PF13401	17 - 168	6.5e-06	AAA domain
Mg_chelatase	PF01078	102 - 172	1.9e-07	Magnesium chelatase, subunit ChlI
AAA_lid_2	PF17863	252 - 310	2.1e-20	AAA lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18480 AT5G45930
fragaria_vesca	FvH4_3g08130 FvH4_3g08130 FvH4_3g08130
malus_domestica	MD05G1304900.v1.1 MD10G1284000.v1.1
prunus_persica	Prupe.4G057500_v2.0.a1
pyrus_communis	pycom05g28220 pycom10g23690
rosa_chinensis	RchiOBHm_Chr5g0010061
rosa_laevigata	RLG00000031723
rosa_multiflora	Rmu_sc0002275.1_g000009 Rmu_sc0016197.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066110
rosa_rugosa	Rorug04G0448900
rosa_samantha	Rh5AG079800 Rh5BG074600 Rh5CG087200 Rh5DG075300
rosa_wichuraiana	Rw5G007390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	783
AciI	CCGC	1 cut(s)	536
AclWI	GGATC	6 cut(s)	26, 134, 158, 747, 911, 924
AcsI	RAATTY	1 cut(s)	959
AcuI	CTGAAG	2 cut(s)	668, 958
AfaI	GTAC	1 cut(s)	726
AfiI	CCNNNNNNNGG	3 cut(s)	41, 441, 521
AflII	CTTAAG	1 cut(s)	895
AgsI	TTSAA	1 cut(s)	778
AjnI	CCWGG	2 cut(s)	735, 759
AluBI	AGCT	9 cut(s)	308, 356, 529, 623, 668, 682, 704, 827, 978
AluI	AGCT	9 cut(s)	308, 356, 529, 623, 668, 682, 704, 827, 978
Alw21I	GWGCWC	2 cut(s)	531, 625
Alw26I	GTCTC	1 cut(s)	792
AlwI	GGATC	6 cut(s)	26, 134, 158, 747, 911, 924
AoxI	GGCC	3 cut(s)	171, 178, 533
ApaI	GGGCCC	1 cut(s)	182
ApeKI	GCWGC	3 cut(s)	431, 818, 833
ApoI	RAATTY	1 cut(s)	959
ArsI	GACNNNNNNTTYG	2 cut(s)	891, 923
AspS9I	GGNCC	3 cut(s)	154, 178, 179
AsuC2I	CCSGG	3 cut(s)	76, 182, 339
AsuHPI	GGTGA	4 cut(s)	74, 149, 760, 868
AvaII	GGWCC	1 cut(s)	154
BaeGI	GKGCMC	1 cut(s)	182
BamHI	GGATCC	1 cut(s)	916
BanII	GRGCYC	3 cut(s)	182, 531, 625
BbsI	GAAGAC	3 cut(s)	5, 707, 899
Bbv12I	GWGCWC	2 cut(s)	531, 625
BbvCI	CCTCAGC	1 cut(s)	700
BbvI	GCAGC	3 cut(s)	418, 805, 820
BccI	CCATC	2 cut(s)	435, 727
BciT130I	CCWGG	2 cut(s)	737, 761
BclI	TGATCA	2 cut(s)	54, 400
BcnI	CCSGG	3 cut(s)	76, 182, 339
BcoDI	GTCTC	1 cut(s)	792
BfaI	CTAG	1 cut(s)	705
BfrI	CTTAAG	1 cut(s)	895
BglII	AGATCT	1 cut(s)	969
BisI	GCNGC	4 cut(s)	432, 536, 819, 834
BlpI	GCTNAGC	1 cut(s)	669
BlsI	GCNGC	4 cut(s)	433, 537, 820, 835
Bme1390I	CCNGG	5 cut(s)	76, 182, 339, 737, 761
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	3 cut(s)	154, 178, 179
BmiI	GGNNCC	4 cut(s)	73, 156, 180, 918
BmrFI	CCNGG	5 cut(s)	76, 182, 339, 737, 761
BmsI	GCATC	1 cut(s)	577
BpiI	GAAGAC	3 cut(s)	5, 707, 899
BpmI	CTGGAG	1 cut(s)	846
Bpu10I	CCTNAGC	2 cut(s)	530, 700
Bpu1102I	GCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	2 cut(s)	552, 728
BpuMI	CCSGG	3 cut(s)	76, 182, 339
BsaJI	CCNNGG	2 cut(s)	174, 759
BsaXI	ACNNNNNCTCC	2 cut(s)	789, 819
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 441, 521
BseBI	CCWGG	2 cut(s)	737, 761
BseDI	CCNNGG	2 cut(s)	174, 759
BseGI	GGATG	7 cut(s)	385, 403, 418, 446, 478, 592, 882
BseLI	CCNNNNNNNGG	3 cut(s)	41, 441, 521
BseMII	CTCAG	5 cut(s)	306, 544, 587, 660, 714
BseRI	GAGGAG	2 cut(s)	629, 810
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	3 cut(s)	418, 805, 820
BshFI	GGCC	3 cut(s)	173, 180, 535
BsiHKAI	GWGCWC	2 cut(s)	531, 625
BsiSI	CCGG	3 cut(s)	75, 182, 338
BslFI	GGGAC	3 cut(s)	301, 354, 589
BslI	CCNNNNNNNGG	3 cut(s)	41, 441, 521
BsmAI	GTCTC	1 cut(s)	792
BsmFI	GGGAC	3 cut(s)	301, 354, 589
BsmI	GAATGC	1 cut(s)	366
BsnI	GGCC	3 cut(s)	173, 180, 535
Bsp120I	GGGCCC	1 cut(s)	178
Bsp1286I	GDGCHC	3 cut(s)	182, 531, 625
Bsp1407I	TGTACA	1 cut(s)	724
Bsp143I	GATC	9 cut(s)	31, 54, 139, 163, 237, 400, 739, 916, 969
Bsp1720I	GCTNAGC	1 cut(s)	669
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	1 cut(s)	536
BspANI	GGCC	3 cut(s)	173, 180, 535
BspCNI	CTCAG	5 cut(s)	307, 543, 588, 661, 713
BspHI	TCATGA	1 cut(s)	51
BspLI	GGNNCC	4 cut(s)	73, 156, 180, 918
BspPI	GGATC	6 cut(s)	26, 134, 158, 747, 911, 924
BspTI	CTTAAG	1 cut(s)	895
BsrGI	TGTACA	1 cut(s)	724
BssECI	CCNNGG	2 cut(s)	174, 759
BssMI	GATC	9 cut(s)	31, 54, 139, 163, 237, 400, 739, 916, 969
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	2 cut(s)	737, 761
Bst4CI	ACNGT	5 cut(s)	91, 451, 551, 580, 880
BstAFI	CTTAAG	1 cut(s)	895
BstAUI	TGTACA	1 cut(s)	724
BstC8I	GCNNGC	1 cut(s)	564
BstDEI	CTNAG	6 cut(s)	234, 315, 530, 596, 669, 700
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	7 cut(s)	385, 403, 418, 446, 478, 592, 882
BstKTI	GATC	9 cut(s)	34, 57, 142, 166, 240, 403, 742, 919, 972
BstMAI	GTCTC	1 cut(s)	792
BstMBI	GATC	9 cut(s)	31, 54, 139, 163, 237, 400, 739, 916, 969
BstMWI	GCNNNNNNNGC	5 cut(s)	535, 541, 679, 824, 833
BstNI	CCWGG	2 cut(s)	737, 761
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	5 cut(s)	74, 180, 337, 735, 759
BstSLI	GKGCMC	1 cut(s)	182
BstV1I	GCAGC	3 cut(s)	418, 805, 820
BstV2I	GAAGAC	3 cut(s)	5, 707, 899
BstX2I	RGATCY	4 cut(s)	163, 739, 916, 969
BstYI	RGATCY	4 cut(s)	163, 739, 916, 969
BsuRI	GGCC	3 cut(s)	173, 180, 535
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	7 cut(s)	385, 403, 418, 446, 478, 592, 882
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	1 cut(s)	564
CciI	TCATGA	1 cut(s)	51
Cfr13I	GGNCC	3 cut(s)	154, 178, 179
Csp6I	GTAC	1 cut(s)	725
CspCI	CAANNNNNGTGG	2 cut(s)	25, 60
CviAII	CATG	5 cut(s)	52, 58, 175, 244, 563
CviQI	GTAC	1 cut(s)	725
DdeI	CTNAG	6 cut(s)	234, 315, 530, 596, 669, 700
DpnI	GATC	9 cut(s)	33, 56, 141, 165, 239, 402, 741, 918, 971
DpnII	GATC	9 cut(s)	31, 54, 139, 163, 237, 400, 739, 916, 969
Ecl136II	GAGCTC	2 cut(s)	529, 623
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	3 cut(s)	182, 531, 625
Eco47I	GGWCC	1 cut(s)	154
Eco53kI	GAGCTC	2 cut(s)	529, 623
Eco57I	CTGAAG	2 cut(s)	668, 958
EcoICRI	GAGCTC	2 cut(s)	529, 623
EcoRII	CCWGG	2 cut(s)	735, 759
EcoT14I	CCWWGG	1 cut(s)	174
EcoT22I	ATGCAT	1 cut(s)	564
EcoT38I	GRGCYC	3 cut(s)	182, 531, 625
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	5 cut(s)	55, 61, 178, 247, 566
FaiI	YATR	9 cut(s)	10, 53, 59, 176, 245, 375, 560, 564, 803
FalI	AAGNNNNNCTT	4 cut(s)	375, 407, 666, 698
FaqI	GGGAC	3 cut(s)	301, 354, 589
FatI	CATG	5 cut(s)	51, 57, 174, 243, 562
FbaI	TGATCA	2 cut(s)	54, 400
FblI	GTMKAC	1 cut(s)	783
Fnu4HI	GCNGC	4 cut(s)	432, 536, 819, 834
FokI	GGATG	7 cut(s)	392, 410, 425, 453, 465, 599, 869
FriOI	GRGCYC	3 cut(s)	182, 531, 625
Fsp4HI	GCNGC	4 cut(s)	432, 536, 819, 834
FspBI	CTAG	1 cut(s)	705
GluI	GCNGC	4 cut(s)	432, 536, 819, 834
GsuI	CTGGAG	1 cut(s)	846
HaeIII	GGCC	3 cut(s)	173, 180, 535
HapII	CCGG	3 cut(s)	75, 182, 338
Hin1II	CATG	5 cut(s)	55, 61, 178, 247, 566
HincII	GTYRAC	1 cut(s)	784
HindII	GTYRAC	1 cut(s)	784
HindIII	AAGCTT	2 cut(s)	680, 825
HinfI	GANTC	4 cut(s)	425, 859, 926, 935
HpaII	CCGG	3 cut(s)	75, 182, 338
HphI	GGTGA	4 cut(s)	74, 149, 760, 868
Hpy166II	GTNNAC	2 cut(s)	784, 944
Hpy188I	TCNGA	4 cut(s)	154, 312, 772, 912
Hpy188III	TCNNGA	7 cut(s)	52, 116, 167, 438, 515, 686, 863
Hpy8I	GTNNAC	2 cut(s)	784, 944
Hpy99I	CGWCG	1 cut(s)	788
HpyAV	CCTTC	3 cut(s)	515, 840, 907
HpyCH4III	ACNGT	5 cut(s)	91, 451, 551, 580, 880
HpyCH4V	TGCA	6 cut(s)	214, 350, 485, 562, 590, 821
HpyF10VI	GCNNNNNNNGC	5 cut(s)	535, 541, 679, 824, 833
HpyF3I	CTNAG	6 cut(s)	234, 315, 530, 596, 669, 700
Hsp92II	CATG	5 cut(s)	55, 61, 178, 247, 566
Ksp22I	TGATCA	2 cut(s)	54, 400
Kzo9I	GATC	9 cut(s)	31, 54, 139, 163, 237, 400, 739, 916, 969
LmnI	GCTCC	1 cut(s)	526
Lsp1109I	GCAGC	3 cut(s)	418, 805, 820
LweI	GCATC	1 cut(s)	577
MaeI	CTAG	1 cut(s)	705
MaeIII	GTNAC	2 cut(s)	805, 856
MalI	GATC	9 cut(s)	33, 56, 141, 165, 239, 402, 741, 918, 971
MboI	GATC	9 cut(s)	31, 54, 139, 163, 237, 400, 739, 916, 969
MboII	GAAGA	9 cut(s)	5, 173, 284, 530, 616, 707, 878, 899, 964
MflI	RGATCY	4 cut(s)	163, 739, 916, 969
MhlI	GDGCHC	3 cut(s)	182, 531, 625
MluCI	AATT	4 cut(s)	120, 148, 693, 959
MlyI	GAGTC	3 cut(s)	853, 929, 935
Mph1103I	ATGCAT	1 cut(s)	564
MseI	TTAA	3 cut(s)	123, 387, 896
MslI	CAYNNNNRTG	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	978
MspCI	CTTAAG	1 cut(s)	895
MspI	CCGG	3 cut(s)	75, 182, 338
MspR9I	CCNGG	5 cut(s)	76, 182, 339, 737, 761
Mva1269I	GAATGC	1 cut(s)	366
MvaI	CCWGG	2 cut(s)	737, 761
MwoI	GCNNNNNNNGC	5 cut(s)	535, 541, 679, 824, 833
NciI	CCSGG	3 cut(s)	76, 182, 339
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	9 cut(s)	31, 54, 139, 163, 237, 400, 739, 916, 969
NlaIII	CATG	5 cut(s)	55, 61, 178, 247, 566
NlaIV	GGNNCC	4 cut(s)	73, 156, 180, 918
NmuCI	GTSAC	2 cut(s)	805, 856
NsiI	ATGCAT	1 cut(s)	564
NspI	RCATGY	1 cut(s)	566
PaeI	GCATGC	1 cut(s)	566
PagI	TCATGA	1 cut(s)	51
PctI	GAATGC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	425
PflFI	GACNNNGTC	1 cut(s)	903
PkrI	GCNGC	4 cut(s)	433, 537, 820, 835
PleI	GAGTC	3 cut(s)	853, 929, 934
PpsI	GAGTC	3 cut(s)	853, 929, 934
Psp124BI	GAGCTC	2 cut(s)	531, 625
Psp6I	CCWGG	2 cut(s)	735, 759
PspGI	CCWGG	2 cut(s)	735, 759
PspN4I	GGNNCC	4 cut(s)	73, 156, 180, 918
PspOMI	GGGCCC	1 cut(s)	178
PspPI	GGNCC	3 cut(s)	154, 178, 179
PsuI	RGATCY	4 cut(s)	163, 739, 916, 969
PsyI	GACNNNGTC	1 cut(s)	903
PvuII	CAGCTG	1 cut(s)	978
RsaI	GTAC	1 cut(s)	726
RsaNI	GTAC	1 cut(s)	725
RseI	CAYNNNNRTG	1 cut(s)	56
SacI	GAGCTC	2 cut(s)	531, 625
SalI	GTCGAC	1 cut(s)	782
SaqAI	TTAA	3 cut(s)	123, 387, 896
SatI	GCNGC	4 cut(s)	432, 536, 819, 834
Sau3AI	GATC	9 cut(s)	31, 54, 139, 163, 237, 400, 739, 916, 969
Sau96I	GGNCC	3 cut(s)	154, 178, 179
SchI	GAGTC	3 cut(s)	853, 929, 935
ScrFI	CCNGG	5 cut(s)	76, 182, 339, 737, 761
SduI	GDGCHC	3 cut(s)	182, 531, 625
SfaNI	GCATC	1 cut(s)	577
SinI	GGWCC	1 cut(s)	154
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	3 cut(s)	567, 743, 895
SmoI	CTYRAG	3 cut(s)	567, 743, 895
SphI	GCATGC	1 cut(s)	566
Sse9I	AATT	4 cut(s)	120, 148, 693, 959
SsiI	CCGC	1 cut(s)	536
SspMI	CTAG	1 cut(s)	705
SstI	GAGCTC	2 cut(s)	531, 625
StyD4I	CCNGG	5 cut(s)	74, 180, 337, 735, 759
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	5 cut(s)	91, 451, 551, 580, 880
TaqI	TCGA	4 cut(s)	294, 470, 783, 929
TasI	AATT	4 cut(s)	120, 148, 693, 959
TatI	WGTACW	1 cut(s)	724
TauI	GCSGC	1 cut(s)	538
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	3 cut(s)	123, 387, 896
Tru9I	TTAA	3 cut(s)	123, 387, 896
TscAI	CASTG	1 cut(s)	456
TseFI	GTSAC	2 cut(s)	805, 856
TseI	GCWGC	3 cut(s)	431, 818, 833
Tsp45I	GTSAC	2 cut(s)	805, 856
TspDTI	ATGAA	3 cut(s)	17, 396, 481
TspGWI	ACGGA	2 cut(s)	284, 801
TspRI	CASTG	1 cut(s)	456
Tth111I	GACNNNGTC	1 cut(s)	903
Vha464I	CTTAAG	1 cut(s)	895
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	1 cut(s)	959
XceI	RCATGY	1 cut(s)	566
XmiI	GTMKAC	1 cut(s)	783
XspI	CTAG	1 cut(s)	705
Zsp2I	ATGCAT	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.