Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001706

Physical Location & Seq

Genomic Coordinates Reverse (-)

60408248 .. 60418261

Gene Structure 10014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0448900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAAAGAAATGTTCTTGCCTGACTTGAACAATGGTAAAGTGAGTTTACTGGCTGTGATCTCCACCAGTCGATTCGCTCCGGTGCTCTCTCCCTCTCATCCCTCAAACTCATTTCTAGGGTTTCGCCCAACACCACCACCGACGACGGAACCGATCGTCTCCTTCTCATGGACGAGAGCCACATCACCGCTAATCACGCGCCCTTGCCTCATCGTGTTTCGATTCCAGAAGACGGAGATTTACCTCTCCGATCTCCAATACGGCGTGCCGTTTCTGGTTCGAGATACCGCTCCGGTCTTCGATTCGATCGATACGAGTGATGCCGATTGGGAGTTCATTGCTGAGGAGGAGCACGAACGATGCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010007 GO:0010033 GO:0015994 GO:0015995 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016851 GO:0016874 GO:0016887 GO:0017111 GO:0018130 GO:0019438 GO:0030312 GO:0032991 GO:0033013 GO:0033014 GO:0034641 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051002 GO:0051003 GO:0051186 GO:0051188 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Mg_chelatase

Protein Analysis

122

Amino Acids

13.74

Weight (kDa)

4.87

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT2G33980 AT2G33980 AT2G33980 AT2G33980
fragaria_vesca	FvH4_3g08140
malus_domestica	MD05G1305000.v1.1 MD10G1284300.v1.1
prunus_persica	Prupe.4G057200_v2.0.a1
pyrus_communis	pycom05g28230 pycom10g23720
rosa_chinensis	RchiOBHm_Chr1g0373431 RchiOBHm_Chr2g0139421 RchiOBHm_Chr2g0167991 RchiOBHm_Chr2g0168001 RchiOBHm_Chr5g0010041 RchiOBHm_Chr5g0010051
rosa_laevigata	RLG00000031721 RLG00000031722
rosa_multiflora	Rmu_co8078996.1_g000001 Rmu_sc0001896.1_g000034 Rmu_sc0002275.1_g000008 Rmu_sc0016197.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066120 Rroxscaffold_1G00066130 Rroxscaffold_2G00103220
rosa_rugosa	Rorug04G0448800 Rorug04G0448900 Rorug04G0448900 Rorug04G0448900
rosa_samantha	Rh3BG108900 Rh3CG348700 Rh5AG079600 Rh5AG079700 Rh5BG074400 Rh5BG074500 Rh5CG087000 Rh5CG087100 Rh5DG075100 Rh5DG075200
rosa_wichuraiana	Rw3G023780 Rw5G007370 Rw5G007380 Rw7G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	290
AccII	CGCG	1 cut(s)	199
AciI	CCGC	3 cut(s)	188, 288, 363
AfiI	CCNNNNNNNGG	2 cut(s)	168, 232
AgsI	TTSAA	1 cut(s)	28
Alw21I	GWGCWC	2 cut(s)	87, 354
Alw26I	GTCTC	1 cut(s)	163
AspLEI	GCGC	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	177
BbsI	GAAGAC	2 cut(s)	236, 289
Bbv12I	GWGCWC	2 cut(s)	87, 354
BbvCI	CCTCAGC	1 cut(s)	342
BceAI	ACGGC	2 cut(s)	253, 277
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	150
BmsI	GCATC	2 cut(s)	310, 350
BpiI	GAAGAC	2 cut(s)	236, 289
Bpu10I	CCTNAGC	1 cut(s)	342
Bsa29I	ATCGAT	1 cut(s)	309
BsaWI	WCCGGW	2 cut(s)	79, 292
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 232
Bse1I	ACTGG	2 cut(s)	54, 66
Bse3DI	GCAATG	1 cut(s)	336
BseCI	ATCGAT	1 cut(s)	309
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	2 cut(s)	168, 232
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	2 cut(s)	54, 66
BseRI	GAGGAG	2 cut(s)	359, 362
Bsh1236I	CGCG	1 cut(s)	199
Bsh1285I	CGRYCG	2 cut(s)	156, 309
BshVI	ATCGAT	1 cut(s)	309
BsiEI	CGRYCG	2 cut(s)	156, 309
BsiHKAI	GWGCWC	2 cut(s)	87, 354
BsiSI	CCGG	2 cut(s)	80, 293
BslI	CCNNNNNNNGG	2 cut(s)	168, 232
BsmAI	GTCTC	1 cut(s)	163
BsmBI	CGTCTC	1 cut(s)	163
Bsp1286I	GDGCHC	2 cut(s)	87, 354
Bsp143I	GATC	4 cut(s)	57, 153, 250, 306
BspACI	CCGC	3 cut(s)	188, 288, 363
BspCNI	CTCAG	1 cut(s)	334
BspDI	ATCGAT	1 cut(s)	309
BspFNI	CGCG	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	150
BsrBI	CCGCTC	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	336
BsrI	ACTGG	2 cut(s)	54, 66
BssMI	GATC	4 cut(s)	57, 153, 250, 306
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	97
BstFNI	CGCG	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	4 cut(s)	60, 156, 253, 309
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	4 cut(s)	57, 153, 250, 306
BstMCI	CGRYCG	2 cut(s)	156, 309
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstUI	CGCG	1 cut(s)	199
BstV2I	GAAGAC	2 cut(s)	236, 289
Bsu15I	ATCGAT	1 cut(s)	309
BsuTUI	ATCGAT	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	266
CfoI	GCGC	1 cut(s)	201
ClaI	ATCGAT	1 cut(s)	309
CviAII	CATG	1 cut(s)	168
CviJI	RGCY	2 cut(s)	53, 179
CviKI_1	RGCY	2 cut(s)	53, 179
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	4 cut(s)	59, 155, 252, 308
DpnII	GATC	4 cut(s)	57, 153, 250, 306
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	1 cut(s)	171
FaiI	YATR	1 cut(s)	169
FatI	CATG	1 cut(s)	167
FokI	GGATG	1 cut(s)	84
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	1 cut(s)	200
HapII	CCGG	2 cut(s)	80, 293
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	1 cut(s)	171
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HinfI	GANTC	3 cut(s)	72, 222, 302
HpaII	CCGG	2 cut(s)	80, 293
HphI	GGTGA	1 cut(s)	177
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	2 cut(s)	226, 281
Hpy8I	GTNNAC	1 cut(s)	47
Hpy99I	CGWCG	2 cut(s)	145, 148
HpyAV	CCTTC	1 cut(s)	172
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
HpyF3I	CTNAG	1 cut(s)	342
Hsp92II	CATG	1 cut(s)	171
HspAI	GCGC	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	57, 153, 250, 306
LmnI	GCTCC	3 cut(s)	82, 295, 349
LpnPI	CCDG	7 cut(s)	33, 35, 79, 93, 239, 260, 306
LweI	GCATC	2 cut(s)	310, 350
MaeI	CTAG	1 cut(s)	116
MalI	GATC	4 cut(s)	59, 155, 252, 308
MbiI	CCGCTC	1 cut(s)	290
MboI	GATC	4 cut(s)	57, 153, 250, 306
MboII	GAAGA	2 cut(s)	241, 289
MhlI	GDGCHC	2 cut(s)	87, 354
MnlI	CCTC	6 cut(s)	103, 112, 218, 254, 337, 340
MspI	CCGG	2 cut(s)	80, 293
MvnI	CGCG	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	196
NdeII	GATC	4 cut(s)	57, 153, 250, 306
NlaIII	CATG	1 cut(s)	171
NlaIV	GGNNCC	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	3 cut(s)	149, 306, 311
PfeI	GAWTC	3 cut(s)	72, 222, 302
Ple19I	CGATCG	2 cut(s)	156, 309
PspN4I	GGNNCC	1 cut(s)	150
PvuI	CGATCG	2 cut(s)	156, 309
Sau3AI	GATC	4 cut(s)	57, 153, 250, 306
SduI	GDGCHC	2 cut(s)	87, 354
SetI	ASST	1 cut(s)	246
SfaNI	GCATC	2 cut(s)	310, 350
SsiI	CCGC	3 cut(s)	188, 288, 363
SspMI	CTAG	1 cut(s)	116
TaqI	TCGA	6 cut(s)	70, 220, 280, 300, 305, 309
TfiI	GAWTC	3 cut(s)	72, 222, 302
TspDTI	ATGAA	2 cut(s)	17, 325
TspGWI	ACGGA	2 cut(s)	161, 248
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.