Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001706

Physical Location & Seq

Genomic Coordinates Reverse (-)

29024432 .. 29025969

Gene Structure 1538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28230.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGATCTCGATCCTCAGAACGCTATCACCACCGCCTCCGCTACTCATGGAGCCGCCCAATTCATGCGGAGGCTCACAGAGACTCATCGCCTTGGCCCAGCAGCTCCGCCTCTACAAGCCGCCGCCTTTGCCCTCCGACGACGACATTGAGGAGCAGCGAATCGAGGAAACCGCCGGCAAGGTCGTGTCCCAGGTGGGATTTGCCGAATCCGACACCCCAGTTGCGCGGGACCCAGAAAAGTTCAGACCCAAGAGAGCCGCCGTCTTGGTCTGCCTCTTTGAAGGGGACGCCGGCGATCTCCGCGTCATTCTCACTAAGCGGTCATCGAAGCTGTCCACTCACTCCGGTGAAGTTTCATTGCCGGGTGGGAAAACAGAGGAGGGGGATAAGGATGACGGGGACACGGCGACGAGGGAGGCGAAAGAAGAGATTGGTTTGGATCCTAAGCTTGTCAATGTTGTCACTGTTCTTGAACCATTCCTATCAAAGCATCTACTAAGAGTTGTTCCGGTTATTGGCATACTTAATGAGAAGGAAGCATTCAAGCCTGATCCAAATCCTGCTGAAGTGGAAGCAATATTCGATGCCCCCCTGGAAATGTTCCTCAAGGATGAAAACCGGACGTCAGATGAGAGAGAGTGGATGGGAGACAAGTTTCTGATCCATTTCTTCGACTACGAAACCAAGAACAAGAAGTACATTGATCGATCTGGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006104 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0010945 GO:0015936 GO:0015937 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

240

Amino Acids

26.59

Weight (kDa)

4.93

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT2G33980 AT2G33980 AT2G33980 AT2G33980
fragaria_vesca	FvH4_3g08140
malus_domestica	MD05G1305000.v1.1 MD10G1284300.v1.1
prunus_persica	Prupe.4G057200_v2.0.a1
pyrus_communis	pycom05g28230 pycom10g23720
rosa_chinensis	RchiOBHm_Chr1g0373431 RchiOBHm_Chr2g0139421 RchiOBHm_Chr2g0167991 RchiOBHm_Chr2g0168001 RchiOBHm_Chr5g0010041 RchiOBHm_Chr5g0010051
rosa_laevigata	RLG00000031721 RLG00000031722
rosa_multiflora	Rmu_co8078996.1_g000001 Rmu_sc0001896.1_g000034 Rmu_sc0002275.1_g000008 Rmu_sc0016197.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066120 Rroxscaffold_1G00066130 Rroxscaffold_2G00103220
rosa_rugosa	Rorug04G0448800 Rorug04G0448900 Rorug04G0448900 Rorug04G0448900
rosa_samantha	Rh3BG108900 Rh3CG348700 Rh5AG079600 Rh5AG079700 Rh5BG074400 Rh5BG074500 Rh5CG087000 Rh5CG087100 Rh5DG075100 Rh5DG075200
rosa_wichuraiana	Rw3G023780 Rw5G007370 Rw5G007380 Rw7G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	626
AccII	CGCG	2 cut(s)	226, 303
AclWI	GGATC	5 cut(s)	4, 434, 447, 545, 655
AcuI	CTGAAG	1 cut(s)	585
AcyI	GRCGYC	2 cut(s)	288, 623
AfaI	GTAC	1 cut(s)	698
AfiI	CCNNNNNNNGG	1 cut(s)	515
AgsI	TTSAA	3 cut(s)	281, 473, 544
AjnI	CCWGG	2 cut(s)	189, 591
AleI	CACNNNNGTG	1 cut(s)	345
AluBI	AGCT	3 cut(s)	103, 331, 448
AluI	AGCT	3 cut(s)	103, 331, 448
Alw26I	GTCTC	2 cut(s)	73, 642
AlwI	GGATC	5 cut(s)	4, 434, 447, 545, 655
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	100, 154
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	2 cut(s)	94, 229
AsuC2I	CCSGG	1 cut(s)	363
AsuHPI	GGTGA	2 cut(s)	18, 359
AvaII	GGWCC	1 cut(s)	229
BamHI	GGATCC	1 cut(s)	439
BbvI	GCAGC	2 cut(s)	112, 166
BccI	CCATC	1 cut(s)	637
BceAI	ACGGC	2 cut(s)	245, 420
BciT130I	CCWGG	2 cut(s)	191, 593
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	73, 642
BisI	GCNGC	6 cut(s)	53, 101, 119, 122, 155, 258
BlsI	GCNGC	6 cut(s)	54, 102, 120, 123, 156, 259
Bme1390I	CCNGG	3 cut(s)	191, 363, 593
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	2 cut(s)	94, 229
BmiI	GGNNCC	4 cut(s)	51, 230, 231, 441
BmrFI	CCNGG	3 cut(s)	191, 363, 593
BmrI	ACTGGG	1 cut(s)	212
BmsI	GCATC	2 cut(s)	499, 574
BmuI	ACTGGG	1 cut(s)	212
Bpu10I	CCTNAGC	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	590
BpuMI	CCSGG	1 cut(s)	363
Bsa29I	ATCGAT	1 cut(s)	706
BsaBI	GATNNNNATC	2 cut(s)	8, 555
BsaHI	GRCGYC	2 cut(s)	288, 623
BsaJI	CCNNGG	3 cut(s)	90, 189, 591
BsaWI	WCCGGW	3 cut(s)	344, 508, 618
Bsc4I	CCNNNNNNNGG	1 cut(s)	515
Bse118I	RCCGGY	2 cut(s)	173, 290
Bse1I	ACTGG	1 cut(s)	218
Bse3DI	GCAATG	1 cut(s)	356
Bse8I	GATNNNNATC	2 cut(s)	8, 555
BseBI	CCWGG	2 cut(s)	191, 593
BseCI	ATCGAT	1 cut(s)	706
BseDI	CCNNGG	3 cut(s)	90, 189, 591
BseGI	GGATG	3 cut(s)	397, 616, 648
BseJI	GATNNNNATC	2 cut(s)	8, 555
BseLI	CCNNNNNNNGG	1 cut(s)	515
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	1 cut(s)	28
BseNI	ACTGG	1 cut(s)	218
BseRI	GAGGAG	2 cut(s)	164, 392
BseXI	GCAGC	2 cut(s)	112, 166
BseYI	CCCAGC	1 cut(s)	96
Bsh1236I	CGCG	2 cut(s)	226, 303
BshFI	GGCC	1 cut(s)	95
BshVI	ATCGAT	1 cut(s)	706
BsiSI	CCGG	6 cut(s)	174, 291, 345, 362, 509, 619
BslFI	GGGAC	4 cut(s)	172, 242, 299, 413
BslI	CCNNNNNNNGG	1 cut(s)	515
BsmAI	GTCTC	2 cut(s)	73, 642
BsmFI	GGGAC	4 cut(s)	172, 242, 299, 413
BsmI	GAATGC	1 cut(s)	539
BsnI	GGCC	1 cut(s)	95
Bsp143I	GATC	8 cut(s)	3, 9, 295, 439, 550, 660, 703, 707
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	27
BspDI	ATCGAT	1 cut(s)	706
BspFNI	CGCG	2 cut(s)	226, 303
BspLI	GGNNCC	4 cut(s)	51, 230, 231, 441
BspPI	GGATC	5 cut(s)	4, 434, 447, 545, 655
BsrDI	GCAATG	1 cut(s)	356
BsrFI	RCCGGY	2 cut(s)	173, 290
BsrI	ACTGG	1 cut(s)	218
BssAI	RCCGGY	2 cut(s)	173, 290
BssECI	CCNNGG	3 cut(s)	90, 189, 591
BssMI	GATC	8 cut(s)	3, 9, 295, 439, 550, 660, 703, 707
BssNI	GRCGYC	2 cut(s)	288, 623
BssT1I	CCWWGG	1 cut(s)	90
Bst2UI	CCWGG	2 cut(s)	191, 593
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	1 cut(s)	420
BstACI	GRCGYC	2 cut(s)	288, 623
BstC8I	GCNNGC	2 cut(s)	175, 292
BstDEI	CTNAG	4 cut(s)	14, 315, 444, 497
BstF5I	GGATG	3 cut(s)	397, 616, 648
BstFNI	CGCG	2 cut(s)	226, 303
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	8 cut(s)	6, 12, 298, 442, 553, 663, 706, 710
BstMAI	GTCTC	2 cut(s)	73, 642
BstMBI	GATC	8 cut(s)	3, 9, 295, 439, 550, 660, 703, 707
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 300
BstNI	CCWGG	2 cut(s)	191, 593
BstSCI	CCNGG	3 cut(s)	189, 361, 591
BstUI	CGCG	2 cut(s)	226, 303
BstV1I	GCAGC	2 cut(s)	112, 166
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
Bsu15I	ATCGAT	1 cut(s)	706
BsuRI	GGCC	1 cut(s)	95
BsuTUI	ATCGAT	1 cut(s)	706
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	397, 616, 648
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	2 cut(s)	175, 292
CfoI	GCGC	1 cut(s)	226
Cfr10I	RCCGGY	2 cut(s)	173, 290
Cfr13I	GGNCC	2 cut(s)	94, 229
ClaI	ATCGAT	1 cut(s)	706
CseI	GACGC	2 cut(s)	292, 296
Csp6I	GTAC	1 cut(s)	697
CviAII	CATG	2 cut(s)	46, 63
CviJI	RGCY	9 cut(s)	52, 72, 95, 103, 118, 257, 331, 448, 547
CviKI_1	RGCY	9 cut(s)	52, 72, 95, 103, 118, 257, 331, 448, 547
CviQI	GTAC	1 cut(s)	697
DdeI	CTNAG	4 cut(s)	14, 315, 444, 497
DpnI	GATC	8 cut(s)	5, 11, 297, 441, 552, 662, 705, 709
DpnII	GATC	8 cut(s)	3, 9, 295, 439, 550, 660, 703, 707
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
EciI	GGCGGA	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	585
EcoO109I	RGGNCCY	1 cut(s)	229
EcoRII	CCWGG	2 cut(s)	189, 591
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	2 cut(s)	49, 66
FaiI	YATR	3 cut(s)	47, 64, 521
FaqI	GGGAC	4 cut(s)	172, 242, 299, 413
FatI	CATG	2 cut(s)	45, 62
FauI	CCCGC	1 cut(s)	219
Fnu4HI	GCNGC	6 cut(s)	53, 101, 119, 122, 155, 258
FokI	GGATG	3 cut(s)	404, 623, 655
Fsp4HI	GCNGC	6 cut(s)	53, 101, 119, 122, 155, 258
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	6 cut(s)	53, 101, 119, 122, 155, 258
GsaI	CCCAGC	1 cut(s)	100
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	6 cut(s)	174, 291, 345, 362, 509, 619
HgaI	GACGC	2 cut(s)	292, 296
HhaI	GCGC	1 cut(s)	226
Hin1I	GRCGYC	2 cut(s)	288, 623
Hin1II	CATG	2 cut(s)	49, 66
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	3 cut(s)	81, 159, 206
HpaII	CCGG	6 cut(s)	174, 291, 345, 362, 509, 619
HphI	GGTGA	2 cut(s)	18, 359
Hpy166II	GTNNAC	1 cut(s)	336
Hpy188I	TCNGA	6 cut(s)	17, 136, 211, 245, 628, 660
Hpy188III	TCNNGA	2 cut(s)	7, 470
Hpy8I	GTNNAC	1 cut(s)	336
Hpy99I	CGWCG	3 cut(s)	140, 143, 412
HpyAV	CCTTC	2 cut(s)	275, 526
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4IV	ACGT	1 cut(s)	623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 300
HpyF3I	CTNAG	4 cut(s)	14, 315, 444, 497
HpySE526I	ACGT	1 cut(s)	623
Hsp92I	GRCGYC	2 cut(s)	288, 623
Hsp92II	CATG	2 cut(s)	49, 66
HspAI	GCGC	1 cut(s)	224
KflI	GGGWCCC	1 cut(s)	229
KroI	GCCGGC	2 cut(s)	173, 290
KroNI	GCCGGC	2 cut(s)	175, 292
Kzo9I	GATC	8 cut(s)	3, 9, 295, 439, 550, 660, 703, 707
LmnI	GCTCC	3 cut(s)	49, 108, 151
Lsp1109I	GCAGC	2 cut(s)	112, 166
LweI	GCATC	2 cut(s)	499, 574
MaeII	ACGT	1 cut(s)	623
MaeIII	GTNAC	1 cut(s)	460
MalI	GATC	8 cut(s)	5, 11, 297, 441, 552, 662, 705, 709
MboI	GATC	8 cut(s)	3, 9, 295, 439, 550, 660, 703, 707
MboII	GAAGA	2 cut(s)	437, 661
MflI	RGATCY	1 cut(s)	439
MluCI	AATT	1 cut(s)	58
MlyI	GAGTC	1 cut(s)	75
MmeI	TCCRAC	2 cut(s)	159, 234
MreI	CGCCGGCG	1 cut(s)	290
MroNI	GCCGGC	2 cut(s)	173, 290
MseI	TTAA	2 cut(s)	525, 718
MslI	CAYNNNNRTG	1 cut(s)	345
MspI	CCGG	6 cut(s)	174, 291, 345, 362, 509, 619
MspR9I	CCNGG	3 cut(s)	191, 363, 593
Mva1269I	GAATGC	1 cut(s)	539
MvaI	CCWGG	2 cut(s)	191, 593
MvnI	CGCG	2 cut(s)	226, 303
MwoI	GCNNNNNNNGC	2 cut(s)	127, 300
NaeI	GCCGGC	2 cut(s)	175, 292
NciI	CCSGG	1 cut(s)	363
NdeII	GATC	8 cut(s)	3, 9, 295, 439, 550, 660, 703, 707
NgoMIV	GCCGGC	2 cut(s)	173, 290
NlaIII	CATG	2 cut(s)	49, 66
NlaIV	GGNNCC	4 cut(s)	51, 230, 231, 441
NmuCI	GTSAC	1 cut(s)	460
OliI	CACNNNNGTG	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	1 cut(s)	416
PctI	GAATGC	1 cut(s)	539
PdiI	GCCGGC	2 cut(s)	175, 292
PfeI	GAWTC	2 cut(s)	159, 206
PkrI	GCNGC	6 cut(s)	54, 102, 120, 123, 156, 259
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
PpuMI	RGGWCCY	1 cut(s)	229
Psp5II	RGGWCCY	1 cut(s)	229
Psp6I	CCWGG	2 cut(s)	189, 591
PspFI	CCCAGC	1 cut(s)	96
PspGI	CCWGG	2 cut(s)	189, 591
PspN4I	GGNNCC	4 cut(s)	51, 230, 231, 441
PspPI	GGNCC	2 cut(s)	94, 229
PspPPI	RGGWCCY	1 cut(s)	229
PsrI	GAACNNNNNNTAC	2 cut(s)	680, 712
PsuI	RGATCY	1 cut(s)	439
RsaI	GTAC	1 cut(s)	698
RsaNI	GTAC	1 cut(s)	697
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	525, 718
SatI	GCNGC	6 cut(s)	53, 101, 119, 122, 155, 258
Sau3AI	GATC	8 cut(s)	3, 9, 295, 439, 550, 660, 703, 707
Sau96I	GGNCC	2 cut(s)	94, 229
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	3 cut(s)	191, 363, 593
SetI	ASST	6 cut(s)	105, 183, 195, 333, 450, 626
SfaNI	GCATC	2 cut(s)	499, 574
SgrAI	CRCCGGYG	1 cut(s)	290
SinI	GGWCC	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
Sse9I	AATT	1 cut(s)	58
SspI	AATATT	1 cut(s)	579
StyD4I	CCNGG	3 cut(s)	189, 361, 591
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	466
TaiI	ACGT	1 cut(s)	626
TaqI	TCGA	6 cut(s)	8, 162, 326, 582, 672, 706
TasI	AATT	1 cut(s)	58
TatI	WGTACW	1 cut(s)	696
TauI	GCSGC	4 cut(s)	55, 121, 124, 260
TfiI	GAWTC	2 cut(s)	159, 206
Tru1I	TTAA	2 cut(s)	525, 718
Tru9I	TTAA	2 cut(s)	525, 718
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	1 cut(s)	460
TseI	GCWGC	2 cut(s)	100, 154
Tsp45I	GTSAC	1 cut(s)	460
TspDTI	ATGAA	3 cut(s)	51, 345, 627
TspRI	CASTG	1 cut(s)	469
VpaK11BI	GGWCC	1 cut(s)	229
ZraI	GACGTC	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.