Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001706

Physical Location & Seq

Genomic Coordinates Forward (+)

2852633 .. 2855809

Gene Structure 3177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G003530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCGCCACCTCTAGGGGTATTGAGCATGGCGCTGCCACCACTAATGGTGATGGCAATGTGGCTCAGGCCGGGCTCCCATCAAGGAAACGTGGGAGGCCCAAAGGTTCAATGGATTCTCACCCGAGAAAGAAAGCGAGTTTCTTTGCCAGGTGGGAAAACAGAGGAGGGAGACAAGGATGATGGTGACACAGCAACAAGAGAAGCGAAAGAGGAGATTGGTTTGGATCCTAAGCTTGTGAATGTTGTCACTGTTCTTGAACCATTTTTGTCAAAGCACCTACTGAGATTTGTACCTGTTATCGGTATACTTAACGATAAGGAAGCATTCAAGCCTGCTCCAAATCCGGCTGAAGTGGAATCAGTATTTGATGCTCCCTTGGAAATGTTCATCAAGGATGAAAACATGAGGGCAGAGGAGAGAGAGTGGATGGGTAACAAATACCTGATTCATTTCTTTGACTATGAAACCAACAACAAGAAGTACATGATATGGGGCTTAACTGCTGGTATCTTGATTAGGGCTGCATCAATTGTATATGAACGGCCTCCACCTTTTGTTCCTTTTATTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006104 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0010945 GO:0015936 GO:0015937 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

191

Amino Acids

21.53

Weight (kDa)

5.71

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	42 - 143	3.7e-09	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT2G33980 AT2G33980 AT2G33980 AT2G33980
fragaria_vesca	FvH4_3g08140
malus_domestica	MD05G1305000.v1.1 MD10G1284300.v1.1
prunus_persica	Prupe.4G057200_v2.0.a1
pyrus_communis	pycom05g28230 pycom10g23720
rosa_chinensis	RchiOBHm_Chr1g0373431 RchiOBHm_Chr2g0139421 RchiOBHm_Chr2g0167991 RchiOBHm_Chr2g0168001 RchiOBHm_Chr5g0010041 RchiOBHm_Chr5g0010051
rosa_laevigata	RLG00000031721 RLG00000031722
rosa_multiflora	Rmu_co8078996.1_g000001 Rmu_sc0001896.1_g000034 Rmu_sc0002275.1_g000008 Rmu_sc0016197.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066120 Rroxscaffold_1G00066130 Rroxscaffold_2G00103220
rosa_rugosa	Rorug04G0448800 Rorug04G0448900 Rorug04G0448900 Rorug04G0448900
rosa_samantha	Rh3BG108900 Rh3CG348700 Rh5AG079600 Rh5AG079700 Rh5BG074400 Rh5BG074500 Rh5CG087000 Rh5CG087100 Rh5DG075100 Rh5DG075200
rosa_wichuraiana	Rw3G023780 Rw5G007370 Rw5G007380 Rw7G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	307
AclWI	GGATC	2 cut(s)	221, 234
AcuI	CTGAAG	1 cut(s)	372
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	294, 485
AfiI	CCNNNNNNNGG	2 cut(s)	14, 302
AgsI	TTSAA	3 cut(s)	110, 260, 331
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	2 cut(s)	221, 234
Ama87I	CYCGRG	1 cut(s)	123
AoxI	GGCC	3 cut(s)	68, 97, 545
ApeKI	GCWGC	2 cut(s)	34, 524
AspLEI	GCGC	2 cut(s)	7, 34
AspS9I	GGNCC	1 cut(s)	98
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	3 cut(s)	61, 112, 197
AvaI	CYCGRG	1 cut(s)	123
BamHI	GGATCC	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	77
BbvI	GCAGC	2 cut(s)	21, 511
BccI	CCATC	4 cut(s)	46, 87, 176, 424
BceAI	ACGGC	1 cut(s)	560
BciT130I	CCWGG	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	1 cut(s)	14
BfoI	RGCGCY	2 cut(s)	8, 35
BisI	GCNGC	2 cut(s)	35, 525
BlsI	GCNGC	2 cut(s)	36, 526
Bme1390I	CCNGG	2 cut(s)	72, 150
BmeT110I	CYCGRG	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	3 cut(s)	6, 76, 228
BmrFI	CCNGG	2 cut(s)	72, 150
BmsI	GCATC	2 cut(s)	361, 536
Bpu10I	CCTNAGC	2 cut(s)	65, 231
BpuMI	CCSGG	1 cut(s)	72
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	378
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 302
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	3 cut(s)	184, 403, 435
BseLI	CCNNNNNNNGG	2 cut(s)	14, 302
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	2 cut(s)	79, 275
BseRI	GAGGAG	3 cut(s)	179, 227, 431
BseXI	GCAGC	2 cut(s)	21, 511
BshFI	GGCC	3 cut(s)	70, 99, 547
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	123
BsiSI	CCGG	2 cut(s)	71, 347
BslI	CCNNNNNNNGG	2 cut(s)	14, 302
BsmAI	GTCTC	1 cut(s)	165
BsmI	GAATGC	1 cut(s)	326
BsnI	GGCC	3 cut(s)	70, 99, 547
BsoBI	CYCGRG	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	226
BspANI	GGCC	3 cut(s)	70, 99, 547
BspCNI	CTCAG	2 cut(s)	78, 276
BspLI	GGNNCC	3 cut(s)	6, 76, 228
BspPI	GGATC	2 cut(s)	221, 234
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	63
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	1 cut(s)	226
BssNAI	GTATAC	1 cut(s)	308
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	378
Bst1107I	GTATAC	1 cut(s)	308
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	253
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	3 cut(s)	65, 231, 284
BstF5I	GGATG	3 cut(s)	184, 403, 435
BstH2I	RGCGCY	2 cut(s)	8, 35
BstHHI	GCGC	2 cut(s)	7, 34
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	1 cut(s)	226
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	70, 148
BstV1I	GCAGC	2 cut(s)	21, 511
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BstZ17I	GTATAC	1 cut(s)	308
BsuRI	GGCC	3 cut(s)	70, 99, 547
BtsCI	GGATG	3 cut(s)	184, 403, 435
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	336
CfoI	GCGC	2 cut(s)	7, 34
Cfr13I	GGNCC	1 cut(s)	98
Csp6I	GTAC	2 cut(s)	293, 484
CviAII	CATG	3 cut(s)	28, 406, 487
CviQI	GTAC	2 cut(s)	293, 484
DdeI	CTNAG	3 cut(s)	65, 231, 284
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	372
Eco88I	CYCGRG	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	77
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	3 cut(s)	31, 409, 490
FaiI	YATR	8 cut(s)	29, 308, 407, 465, 488, 493, 538, 540
FatI	CATG	3 cut(s)	27, 405, 486
FblI	GTMKAC	1 cut(s)	307
Fnu4HI	GCNGC	2 cut(s)	35, 525
FokI	GGATG	3 cut(s)	191, 410, 442
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	2 cut(s)	35, 525
FspBI	CTAG	1 cut(s)	14
GlaI	GCGC	2 cut(s)	6, 33
GluI	GCNGC	2 cut(s)	35, 525
HaeII	RGCGCY	2 cut(s)	8, 35
HaeIII	GGCC	3 cut(s)	70, 99, 547
HapII	CCGG	2 cut(s)	71, 347
HhaI	GCGC	2 cut(s)	7, 34
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	31, 409, 490
Hin6I	GCGC	2 cut(s)	5, 32
HinP1I	GCGC	2 cut(s)	5, 32
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	3 cut(s)	115, 359, 448
HpaII	CCGG	2 cut(s)	71, 347
HphI	GGTGA	3 cut(s)	61, 112, 197
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188III	TCNNGA	2 cut(s)	257, 514
Hpy8I	GTNNAC	1 cut(s)	308
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	1 cut(s)	527
HpyF3I	CTNAG	3 cut(s)	65, 231, 284
HpySE526I	ACGT	1 cut(s)	90
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	31, 409, 490
HspAI	GCGC	2 cut(s)	5, 32
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	3 cut(s)	80, 343, 379
LpnPI	CCDG	9 cut(s)	52, 84, 135, 162, 309, 348, 360, 458, 492
Lsp1109I	GCAGC	2 cut(s)	21, 511
LweI	GCATC	2 cut(s)	361, 536
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	3 cut(s)	185, 247, 434
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	1 cut(s)	531
Mly113I	GGCGCC	1 cut(s)	5
MnlI	CCTC	8 cut(s)	21, 89, 157, 160, 205, 402, 409, 558
MseI	TTAA	2 cut(s)	312, 500
MspI	CCGG	2 cut(s)	71, 347
MspR9I	CCNGG	2 cut(s)	72, 150
MunI	CAATTG	1 cut(s)	531
Mva1269I	GAATGC	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	150
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	72
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	3 cut(s)	31, 409, 490
NlaIV	GGNNCC	3 cut(s)	6, 76, 228
NmuCI	GTSAC	2 cut(s)	185, 247
PctI	GAATGC	1 cut(s)	326
PfeI	GAWTC	3 cut(s)	115, 359, 448
PkrI	GCNGC	2 cut(s)	36, 526
PluTI	GGCGCC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	3 cut(s)	6, 76, 228
PspPI	GGNCC	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	2 cut(s)	294, 485
RsaNI	GTAC	2 cut(s)	293, 484
SaqAI	TTAA	2 cut(s)	312, 500
SatI	GCNGC	2 cut(s)	35, 525
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	1 cut(s)	98
ScrFI	CCNGG	2 cut(s)	72, 150
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	9 cut(s)	13, 93, 108, 154, 237, 282, 298, 447, 556
SfaNI	GCATC	2 cut(s)	361, 536
SfoI	GGCGCC	1 cut(s)	6
Sse9I	AATT	1 cut(s)	531
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	2 cut(s)	70, 148
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	1 cut(s)	253
TaiI	ACGT	1 cut(s)	93
TasI	AATT	1 cut(s)	531
TatI	WGTACW	1 cut(s)	483
TfiI	GAWTC	3 cut(s)	115, 359, 448
Tru1I	TTAA	2 cut(s)	312, 500
Tru9I	TTAA	2 cut(s)	312, 500
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	2 cut(s)	185, 247
TseI	GCWGC	2 cut(s)	34, 524
Tsp45I	GTSAC	2 cut(s)	185, 247
TspDTI	ATGAA	5 cut(s)	379, 414, 440, 480, 555
TspRI	CASTG	1 cut(s)	256
XcmI	CCANNNNNNNNNTGG	1 cut(s)	108
XmiI	GTMKAC	1 cut(s)	307
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.