Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016197.1

Orthogroup ID

OG0001706

Physical Location & Seq

Genomic Coordinates Forward (+)

349 .. 2408

Gene Structure 2060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016197.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

atgagttcaccaaaccttgaacagagacttcaaacgttagcacgacacttcagactccaaagacaagtcaagccgggtgtaccaaccaccaccacaaccgccggttcgaccggccgagctgccgttctggtgtgtctcttccaaggcgacgacggtgacctgcgggtcattctaacaaagcgagcctcaactctctcctctcactctggcgaagtttcgctccccggcgggaaaagagaggagggtgacggtgatgacgtggacacggctctccgggaggccgaggaggagattggattggagccttcgcatgtcgatgttgttgctgttcttgaaccctttgtgaacaagatctttgactatgaaatgaagaataagaagtacaaaatatgggggttaactgctagtatattgataagggctgcatcaattgtatatgaacggccaccaccttttgtagagcaaaatcccagttataaggttgcttttggtgtagaaagtgaagataatcaaatgggttcaagcaaccttgaacagagactccaaattttagcacaagattttagactccagaaaccagtcaaccctggtctatcacctaccagtacaactggctcgatcaaaagagctgcggttctggtgtgtctattacaagaggaagagggtgacctgcacgttattctcacaaagcgagcctcaactctctcttctcactctggtgaggtggctctccccggcggtaaaagagagcaaggtgatgctgatgatgtggacacagctctccgggaagccaaggaagagattggcttagacccttcccaagtcaacattgtcaccattcttgaaccttttgtaaacaagctaggcatgacagtggttcctgtaattggcttactttctaacaaggaagcatttaatccagctccaaatgctgcagaagtggaagcaatcttttatgctccattagaaatgtttctcaaggatgagaacagaagagcagaggagagagaatggatgggagacaaatatctgttgcaacatttctactttcaagatcatggtatagagtatgacatatgggcaataactgctggaattctgatcaaggctgcttcgattgtctaccagcgccagccagcatttcttgaacagagaccgaaattttggagtggaactgctcataaaaccacagcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

398

Amino Acids

44.01

Weight (kDa)

5.24

Isoelectric Point (pI)

55.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT2G33980 AT2G33980 AT2G33980 AT2G33980
fragaria_vesca	FvH4_3g08140
malus_domestica	MD05G1305000.v1.1 MD10G1284300.v1.1
prunus_persica	Prupe.4G057200_v2.0.a1
pyrus_communis	pycom05g28230 pycom10g23720
rosa_chinensis	RchiOBHm_Chr1g0373431 RchiOBHm_Chr2g0139421 RchiOBHm_Chr2g0167991 RchiOBHm_Chr2g0168001 RchiOBHm_Chr5g0010041 RchiOBHm_Chr5g0010051
rosa_laevigata	RLG00000031721 RLG00000031722
rosa_multiflora	Rmu_co8078996.1_g000001 Rmu_sc0001896.1_g000034 Rmu_sc0002275.1_g000008 Rmu_sc0016197.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066120 Rroxscaffold_1G00066130 Rroxscaffold_2G00103220
rosa_rugosa	Rorug04G0448800 Rorug04G0448900 Rorug04G0448900 Rorug04G0448900
rosa_samantha	Rh3BG108900 Rh3CG348700 Rh5AG079600 Rh5AG079700 Rh5BG074400 Rh5BG074500 Rh5CG087000 Rh5CG087100 Rh5DG075100 Rh5DG075200
rosa_wichuraiana	Rw3G023780 Rw5G007370 Rw5G007380 Rw7G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	477
AasI	GACNNNNNNGTC	1 cut(s)	164
Acc36I	ACCTGC	2 cut(s)	168, 678
AccI	GTMKAC	1 cut(s)	1122
AciI	CCGC	5 cut(s)	99, 163, 228, 632, 738
AclI	AACGTT	1 cut(s)	35
AcoI	YGGCCR	2 cut(s)	112, 443
AcsI	RAATTY	3 cut(s)	546, 1095, 1160
AcuI	CTGAAG	1 cut(s)	34
AfaI	GTAC	3 cut(s)	81, 383, 607
AfiI	CCNNNNNNNGG	1 cut(s)	887
AgsI	TTSAA	8 cut(s)	20, 32, 335, 522, 533, 845, 1052, 1148
AjiI	CACGTC	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	586
AleI	CACNNNNGTG	1 cut(s)	717
AloI	GAACNNNNNNTCC	2 cut(s)	525, 557
AluBI	AGCT	5 cut(s)	119, 629, 779, 862, 923
AluI	AGCT	5 cut(s)	119, 629, 779, 862, 923
Alw26I	GTCTC	5 cut(s)	19, 140, 532, 1014, 1147
AoxI	GGCC	3 cut(s)	112, 279, 443
ApeKI	GCWGC	5 cut(s)	119, 422, 629, 932, 1109
ApoI	RAATTY	3 cut(s)	546, 1095, 1160
ArsI	GACNNNNNNTTYG	2 cut(s)	1146, 1178
Asp700I	GAANNNNTTC	1 cut(s)	972
AspLEI	GCGC	1 cut(s)	1131
AsuC2I	CCSGG	5 cut(s)	75, 225, 275, 735, 785
AsuHPI	GGTGA	8 cut(s)	167, 257, 263, 588, 677, 731, 767, 826
BbvI	GCAGC	5 cut(s)	106, 409, 616, 919, 1096
BccI	CCATC	1 cut(s)	1009
BceAI	ACGGC	3 cut(s)	107, 282, 458
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciT130I	CCWGG	1 cut(s)	588
BclI	TGATCA	1 cut(s)	1101
BcnI	CCSGG	5 cut(s)	75, 225, 275, 735, 785
BcoDI	GTCTC	5 cut(s)	19, 140, 532, 1014, 1147
BfaI	CTAG	2 cut(s)	405, 863
BfmI	CTRYAG	1 cut(s)	933
BfoI	RGCGCY	1 cut(s)	1132
BfuAI	ACCTGC	2 cut(s)	168, 678
BglII	AGATCT	1 cut(s)	351
BisI	GCNGC	5 cut(s)	120, 423, 630, 933, 1110
BlsI	GCNGC	5 cut(s)	121, 424, 631, 934, 1111
Bme1390I	CCNGG	6 cut(s)	75, 225, 275, 588, 735, 785
BmgBI	CACGTC	1 cut(s)	259
BmiI	GGNNCC	2 cut(s)	303, 879
BmrFI	CCNGG	6 cut(s)	75, 225, 275, 588, 735, 785
BmrI	ACTGGG	1 cut(s)	465
BmsI	GCATC	2 cut(s)	434, 748
BmuI	ACTGGG	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	554
BpuEI	CTTGAG	1 cut(s)	962
BpuMI	CCSGG	5 cut(s)	75, 225, 275, 735, 785
BsaI	GGTCTC	1 cut(s)	1147
BsaJI	CCNNGG	6 cut(s)	142, 223, 282, 586, 733, 792
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bsc4I	CCNNNNNNNGG	1 cut(s)	887
Bse118I	RCCGGY	2 cut(s)	101, 110
Bse1I	ACTGG	4 cut(s)	471, 578, 603, 616
BseBI	CCWGG	1 cut(s)	588
BseDI	CCNNGG	6 cut(s)	142, 223, 282, 586, 733, 792
BseGI	GGATG	2 cut(s)	988, 1020
BseLI	CCNNNNNNNGG	1 cut(s)	887
BseNI	ACTGG	4 cut(s)	471, 578, 603, 616
BseRI	GAGGAG	5 cut(s)	187, 254, 299, 302, 1016
BseX3I	CGGCCG	1 cut(s)	112
BseXI	GCAGC	5 cut(s)	106, 409, 616, 919, 1096
BsgI	GTGCAG	1 cut(s)	656
Bsh1285I	CGRYCG	2 cut(s)	111, 115
BshFI	GGCC	3 cut(s)	114, 281, 445
BsiEI	CGRYCG	2 cut(s)	111, 115
BsiSI	CCGG	7 cut(s)	74, 102, 111, 225, 274, 735, 784
BslI	CCNNNNNNNGG	1 cut(s)	887
BsmAI	GTCTC	5 cut(s)	19, 140, 532, 1014, 1147
BsnI	GGCC	3 cut(s)	114, 281, 445
Bso31I	GGTCTC	1 cut(s)	1147
Bsp143I	GATC	4 cut(s)	351, 618, 1054, 1101
BspACI	CCGC	5 cut(s)	99, 163, 228, 632, 738
BspANI	GGCC	3 cut(s)	114, 281, 445
BspLI	GGNNCC	2 cut(s)	303, 879
BspMAI	CTGCAG	1 cut(s)	937
BspMI	ACCTGC	2 cut(s)	168, 678
BspQI	GCTCTTC	1 cut(s)	988
BspTNI	GGTCTC	1 cut(s)	1147
BsrFI	RCCGGY	2 cut(s)	101, 110
BsrI	ACTGG	4 cut(s)	471, 578, 603, 616
BssAI	RCCGGY	2 cut(s)	101, 110
BssECI	CCNNGG	6 cut(s)	142, 223, 282, 586, 733, 792
BssMI	GATC	4 cut(s)	351, 618, 1054, 1101
BssT1I	CCWWGG	2 cut(s)	142, 792
Bst2UI	CCWGG	1 cut(s)	588
Bst4CI	ACNGT	3 cut(s)	155, 251, 874
Bst6I	CTCTTC	5 cut(s)	143, 654, 712, 792, 988
BstAPI	GCANNNNNTGC	1 cut(s)	1088
BstC8I	GCNNGC	4 cut(s)	183, 693, 1133, 1137
BstDEI	CTNAG	1 cut(s)	808
BstEII	GGTNACC	2 cut(s)	155, 665
BstF5I	GGATG	2 cut(s)	988, 1020
BstH2I	RGCGCY	1 cut(s)	1132
BstHHI	GCGC	1 cut(s)	1131
BstKTI	GATC	4 cut(s)	354, 621, 1057, 1104
BstMAI	GTCTC	5 cut(s)	19, 140, 532, 1014, 1147
BstMBI	GATC	4 cut(s)	351, 618, 1054, 1101
BstMCI	CGRYCG	2 cut(s)	111, 115
BstMWI	GCNNNNNNNGC	2 cut(s)	929, 1088
BstNI	CCWGG	1 cut(s)	588
BstNSI	RCATGY	1 cut(s)	314
BstPI	GGTNACC	2 cut(s)	155, 665
BstSCI	CCNGG	6 cut(s)	73, 223, 273, 586, 733, 783
BstSFI	CTRYAG	1 cut(s)	933
BstV1I	GCAGC	5 cut(s)	106, 409, 616, 919, 1096
BstX2I	RGATCY	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	351
BstZI	CGGCCG	1 cut(s)	112
BsuRI	GGCC	3 cut(s)	114, 281, 445
BtrI	CACGTC	1 cut(s)	259
BtsCI	GGATG	2 cut(s)	988, 1020
BtsIMutI	CAGTG	1 cut(s)	879
BveI	ACCTGC	2 cut(s)	168, 678
Cac8I	GCNNGC	4 cut(s)	183, 693, 1133, 1137
CfoI	GCGC	1 cut(s)	1131
Cfr10I	RCCGGY	2 cut(s)	101, 110
Csp6I	GTAC	3 cut(s)	80, 382, 606
CviAII	CATG	3 cut(s)	311, 868, 1058
CviQI	GTAC	3 cut(s)	80, 382, 606
DdeI	CTNAG	1 cut(s)	808
DpnI	GATC	4 cut(s)	353, 620, 1056, 1103
DpnII	GATC	4 cut(s)	351, 618, 1054, 1101
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	2 cut(s)	112, 443
EagI	CGGCCG	1 cut(s)	112
Eam1104I	CTCTTC	5 cut(s)	143, 654, 712, 792, 988
EarI	CTCTTC	5 cut(s)	143, 654, 712, 792, 988
EclXI	CGGCCG	1 cut(s)	112
Eco130I	CCWWGG	2 cut(s)	142, 792
Eco31I	GGTCTC	1 cut(s)	1147
Eco52I	CGGCCG	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	34
Eco91I	GGTNACC	2 cut(s)	155, 665
EcoO65I	GGTNACC	2 cut(s)	155, 665
EcoRI	GAATTC	1 cut(s)	1095
EcoRII	CCWGG	1 cut(s)	586
EcoT14I	CCWWGG	2 cut(s)	142, 792
ErhI	CCWWGG	2 cut(s)	142, 792
FaeI	CATG	3 cut(s)	314, 871, 1061
FatI	CATG	3 cut(s)	310, 867, 1057
FauI	CCCGC	2 cut(s)	156, 221
FauNDI	CATATG	1 cut(s)	1076
FbaI	TGATCA	1 cut(s)	1101
FblI	GTMKAC	1 cut(s)	1122
Fnu4HI	GCNGC	5 cut(s)	120, 423, 630, 933, 1110
FokI	GGATG	2 cut(s)	995, 1027
Fsp4HI	GCNGC	5 cut(s)	120, 423, 630, 933, 1110
FspBI	CTAG	2 cut(s)	405, 863
GlaI	GCGC	1 cut(s)	1130
GluI	GCNGC	5 cut(s)	120, 423, 630, 933, 1110
GsuI	CTGGAG	1 cut(s)	554
HaeII	RGCGCY	1 cut(s)	1132
HaeIII	GGCC	3 cut(s)	114, 281, 445
HapII	CCGG	7 cut(s)	74, 102, 111, 225, 274, 735, 784
HhaI	GCGC	1 cut(s)	1131
Hin1II	CATG	3 cut(s)	314, 871, 1061
Hin6I	GCGC	1 cut(s)	1129
HinP1I	GCGC	1 cut(s)	1129
HincII	GTYRAC	3 cut(s)	399, 583, 826
HindII	GTYRAC	3 cut(s)	399, 583, 826
HinfI	GANTC	3 cut(s)	54, 540, 567
HpaI	GTTAAC	1 cut(s)	399
HpaII	CCGG	7 cut(s)	74, 102, 111, 225, 274, 735, 784
HphI	GGTGA	8 cut(s)	167, 257, 263, 588, 677, 731, 767, 826
Hpy188I	TCNGA	2 cut(s)	53, 1101
Hpy188III	TCNNGA	5 cut(s)	332, 571, 842, 1052, 1145
Hpy99I	CGWCG	2 cut(s)	152, 155
HpyAV	CCTTC	2 cut(s)	315, 825
HpyCH4III	ACNGT	3 cut(s)	155, 251, 874
HpyCH4IV	ACGT	3 cut(s)	35, 258, 675
HpyCH4V	TGCA	4 cut(s)	425, 673, 935, 1036
HpyF10VI	GCNNNNNNNGC	2 cut(s)	929, 1088
HpyF3I	CTNAG	1 cut(s)	808
HpySE526I	ACGT	3 cut(s)	35, 258, 675
Hsp92II	CATG	3 cut(s)	314, 871, 1061
HspAI	GCGC	1 cut(s)	1129
Ksp22I	TGATCA	1 cut(s)	1101
KspAI	GTTAAC	1 cut(s)	399
Kzo9I	GATC	4 cut(s)	351, 618, 1054, 1101
LguI	GCTCTTC	1 cut(s)	988
LmnI	GCTCC	4 cut(s)	225, 301, 928, 964
Lsp1109I	GCAGC	5 cut(s)	106, 409, 616, 919, 1096
LweI	GCATC	2 cut(s)	434, 748
MaeI	CTAG	2 cut(s)	405, 863
MaeII	ACGT	3 cut(s)	35, 258, 675
MaeIII	GTNAC	4 cut(s)	155, 245, 665, 832
MalI	GATC	4 cut(s)	353, 620, 1056, 1103
MboI	GATC	4 cut(s)	351, 618, 1054, 1101
MboII	GAAGA	7 cut(s)	130, 382, 515, 671, 699, 809, 1005
MfeI	CAATTG	1 cut(s)	429
MflI	RGATCY	1 cut(s)	351
MluCI	AATT	5 cut(s)	429, 546, 885, 1095, 1160
MlyI	GAGTC	3 cut(s)	48, 534, 561
MroXI	GAANNNNTTC	1 cut(s)	972
MseI	TTAA	2 cut(s)	398, 915
MslI	CAYNNNNRTG	3 cut(s)	315, 717, 872
MspI	CCGG	7 cut(s)	74, 102, 111, 225, 274, 735, 784
MspR9I	CCNGG	6 cut(s)	75, 225, 275, 588, 735, 785
MunI	CAATTG	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	588
MwoI	GCNNNNNNNGC	2 cut(s)	929, 1088
NciI	CCSGG	5 cut(s)	75, 225, 275, 735, 785
NdeI	CATATG	1 cut(s)	1076
NdeII	GATC	4 cut(s)	351, 618, 1054, 1101
NlaIII	CATG	3 cut(s)	314, 871, 1061
NlaIV	GGNNCC	2 cut(s)	303, 879
NmeAIII	GCCGAG	2 cut(s)	140, 307
NmuCI	GTSAC	4 cut(s)	155, 245, 665, 832
NspI	RCATGY	1 cut(s)	314
OliI	CACNNNNGTG	1 cut(s)	717
PciSI	GCTCTTC	1 cut(s)	988
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PdmI	GAANNNNTTC	1 cut(s)	972
PfoI	TCCNGGA	2 cut(s)	273, 783
PkrI	GCNGC	5 cut(s)	121, 424, 631, 934, 1111
PleI	GAGTC	3 cut(s)	48, 534, 561
PpsI	GAGTC	3 cut(s)	48, 534, 561
PsiI	TTATAA	1 cut(s)	477
Psp1406I	AACGTT	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	586
PspEI	GGTNACC	2 cut(s)	155, 665
PspGI	CCWGG	1 cut(s)	586
PspN4I	GGNNCC	2 cut(s)	303, 879
PstI	CTGCAG	1 cut(s)	937
PsuI	RGATCY	1 cut(s)	351
RsaI	GTAC	3 cut(s)	81, 383, 607
RsaNI	GTAC	3 cut(s)	80, 382, 606
RseI	CAYNNNNRTG	3 cut(s)	315, 717, 872
SapI	GCTCTTC	1 cut(s)	988
SaqAI	TTAA	2 cut(s)	398, 915
SatI	GCNGC	5 cut(s)	120, 423, 630, 933, 1110
Sau3AI	GATC	4 cut(s)	351, 618, 1054, 1101
SchI	GAGTC	3 cut(s)	48, 534, 561
ScrFI	CCNGG	6 cut(s)	75, 225, 275, 588, 735, 785
SfaNI	GCATC	2 cut(s)	434, 748
SfcI	CTRYAG	1 cut(s)	933
SmiMI	CAYNNNNRTG	3 cut(s)	315, 717, 872
SmlI	CTYRAG	1 cut(s)	977
SmoI	CTYRAG	1 cut(s)	977
Sse9I	AATT	5 cut(s)	429, 546, 885, 1095, 1160
SsiI	CCGC	5 cut(s)	99, 163, 228, 632, 738
SspMI	CTAG	2 cut(s)	405, 863
StyD4I	CCNGG	6 cut(s)	73, 223, 273, 586, 733, 783
StyI	CCWWGG	2 cut(s)	142, 792
TaaI	ACNGT	3 cut(s)	155, 251, 874
TaiI	ACGT	3 cut(s)	38, 261, 678
TaqI	TCGA	4 cut(s)	107, 315, 617, 1115
TaqII	GACCGA	1 cut(s)	1171
TasI	AATT	5 cut(s)	429, 546, 885, 1095, 1160
TatI	WGTACW	2 cut(s)	381, 605
Tru1I	TTAA	2 cut(s)	398, 915
Tru9I	TTAA	2 cut(s)	398, 915
TscAI	CASTG	1 cut(s)	879
TseFI	GTSAC	4 cut(s)	155, 245, 665, 832
TseI	GCWGC	5 cut(s)	119, 422, 629, 932, 1109
Tsp45I	GTSAC	4 cut(s)	155, 245, 665, 832
TspDTI	ATGAA	3 cut(s)	378, 383, 453
TspRI	CASTG	1 cut(s)	879
XapI	RAATTY	3 cut(s)	546, 1095, 1160
XceI	RCATGY	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	1122
XmnI	GAANNNNTTC	1 cut(s)	972
XspI	CTAG	2 cut(s)	405, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.