Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001706

Physical Location & Seq

Genomic Coordinates Forward (+)

6573325 .. 6575750

Gene Structure 2426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG075200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGAGTTCACCAAACCTTGAACAGAGACTTCAAACGTTAGCACGACACTTCAGACTCCAAAGACAAGTCAAGCCGGGTGTACCAACCACCACCACAACCGCCGGTTCGACCGGCCGAGCTGCCGTTCTGGTGTGTCTCTTCCAAGGCGACGACGGTGACCTGCGGGTCATTCTAACAAAGCGAGCCTCAACTCTCTCCTCTCACTCTGGCGAAGTTTCGCTCCCCGGCGGGAAAAGAGAGGAGGGTGACGGTGATGACGTGGACACGGCTCTCCGGGAGGCCGAGGAGGAGATTGGATTGGAGCCTTCGCATGTCGATGTTGTTGCTGTTCTTGAACCCTTTGTGAACAAGCAAGGAATGCCAGTTATTCCGGTTGTTGGCATACTTAATGTAAAGGAAGCTTTCAAGCCAGCTCCAAATCCTGCTGAAGTGGAGGCAGTATTTGATGCTCCGATGGAAATGTTCATCAAGGATGAGAACCGGAGAGTAGAGATGAGAGAGTGGATGGGGAACAAGTATCTGATTCAGATCTTTGACTATGAAATGAAGAATAAGAAGTACAAAATATGGGGGTTAACTGCTAGTATATTGATAAGGGCTGCATCAATTGTATATGAACGGCCACCACCTTTTGTAGAGCAAAATCCCAGTTATAAGGTTGCTTTTGGTGTAGAAAGTGAAGATAATCAAATGGGTTCAAGCAACCTTGAACAGAGACTCCAAATTTTAGCACAAGATTTTAGACTCCAGAAACCAGTCAACCCTGGTCTATCACCTACCAGTACAACTGGCTCGATCAAAAGAGCTGCGGTTCTGGTGTGTCTATTACAAGAGGAAGAGGGTGACCTGCACGTTATTCTCACAAAGCGAGCCTCAACTCTCTCTTCTCACTCTGGTGAGGTGGCTCTCCCCGGCGGTAAAAGAGAGCAAGGTGATGCTGATGATGTGGACACAGCTCTCCGGGAAGCCAAGGAAGAGATTGGCTTAGACCCTTCCCAAGTCAACATTGTCACCATTCTTGAACCTTTTGTAAACAAGCTAGGCATGACAGTGGTTCCTGTAATTGGCTTACTTTCTAACAAGGAAGCATTTAATCCAGCTCCAAATGCTGCAGAAGTGGAAGCAATCTTTTATGCTCCATTAGAAATGTTTCTCAAGGATGAGAACAGAAGAGCAGAGGAGAGAGAATGGATGGGAGACAAATATCTGTTGCAACATTTCTACTTTCAAGATCATGGTATAGAGTATGACATATGGGCAATAACTGCTGGAATTCTGATCAAGGCTGCTTCGATTGTCTACCAGCGCCAGCCAGCATTTCTTGAACAGAGACCGAAATTTTGGAGTGGAACTGCTCATAAAACCACAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

457

Amino Acids

50.77

Weight (kDa)

5.19

Isoelectric Point (pI)

54.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	39 - 161	4.4e-13	NUDIX domain
NUDIX	PF00293	268 - 394	9.2e-13	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT2G33980 AT2G33980 AT2G33980 AT2G33980
fragaria_vesca	FvH4_3g08140
malus_domestica	MD05G1305000.v1.1 MD10G1284300.v1.1
prunus_persica	Prupe.4G057200_v2.0.a1
pyrus_communis	pycom05g28230 pycom10g23720
rosa_chinensis	RchiOBHm_Chr1g0373431 RchiOBHm_Chr2g0139421 RchiOBHm_Chr2g0167991 RchiOBHm_Chr2g0168001 RchiOBHm_Chr5g0010041 RchiOBHm_Chr5g0010051
rosa_laevigata	RLG00000031721 RLG00000031722
rosa_multiflora	Rmu_co8078996.1_g000001 Rmu_sc0001896.1_g000034 Rmu_sc0002275.1_g000008 Rmu_sc0016197.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066120 Rroxscaffold_1G00066130 Rroxscaffold_2G00103220
rosa_rugosa	Rorug04G0448800 Rorug04G0448900 Rorug04G0448900 Rorug04G0448900
rosa_samantha	Rh3BG108900 Rh3CG348700 Rh5AG079600 Rh5AG079700 Rh5BG074400 Rh5BG074500 Rh5CG087000 Rh5CG087100 Rh5DG075100 Rh5DG075200
rosa_wichuraiana	Rw3G023780 Rw5G007370 Rw5G007380 Rw7G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	654
AasI	GACNNNNNNGTC	1 cut(s)	164
Acc36I	ACCTGC	2 cut(s)	168, 855
AccI	GTMKAC	1 cut(s)	1299
AciI	CCGC	5 cut(s)	99, 163, 228, 809, 915
AclI	AACGTT	1 cut(s)	35
AcoI	YGGCCR	2 cut(s)	112, 620
AcsI	RAATTY	3 cut(s)	723, 1272, 1337
AcuI	CTGAAG	2 cut(s)	34, 447
AfaI	GTAC	3 cut(s)	81, 560, 784
AfiI	CCNNNNNNNGG	2 cut(s)	377, 1064
AgsI	TTSAA	9 cut(s)	20, 32, 335, 406, 699, 710, 1022, 1229, 1325
AjiI	CACGTC	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	763
AleI	CACNNNNGTG	1 cut(s)	894
AloI	GAACNNNNNNTCC	2 cut(s)	702, 734
AluBI	AGCT	7 cut(s)	119, 401, 413, 806, 956, 1039, 1100
AluI	AGCT	7 cut(s)	119, 401, 413, 806, 956, 1039, 1100
Alw26I	GTCTC	5 cut(s)	19, 140, 709, 1191, 1324
AoxI	GGCC	3 cut(s)	112, 279, 620
ApeKI	GCWGC	5 cut(s)	119, 599, 806, 1109, 1286
ApoI	RAATTY	3 cut(s)	723, 1272, 1337
ArsI	GACNNNNNNTTYG	2 cut(s)	1323, 1355
Asp700I	GAANNNNTTC	1 cut(s)	1149
AspLEI	GCGC	1 cut(s)	1308
AsuC2I	CCSGG	5 cut(s)	75, 225, 275, 912, 962
AsuHPI	GGTGA	8 cut(s)	167, 257, 263, 765, 854, 908, 944, 1003
BbvI	GCAGC	5 cut(s)	106, 586, 793, 1096, 1273
BccI	CCATC	3 cut(s)	448, 499, 1186
BceAI	ACGGC	3 cut(s)	107, 282, 635
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciT130I	CCWGG	1 cut(s)	765
BclI	TGATCA	1 cut(s)	1278
BcnI	CCSGG	5 cut(s)	75, 225, 275, 912, 962
BcoDI	GTCTC	5 cut(s)	19, 140, 709, 1191, 1324
BfaI	CTAG	2 cut(s)	582, 1040
BfmI	CTRYAG	1 cut(s)	1110
BfoI	RGCGCY	1 cut(s)	1309
BfuAI	ACCTGC	2 cut(s)	168, 855
BglII	AGATCT	1 cut(s)	528
BisI	GCNGC	5 cut(s)	120, 600, 807, 1110, 1287
BlsI	GCNGC	5 cut(s)	121, 601, 808, 1111, 1288
Bme1390I	CCNGG	6 cut(s)	75, 225, 275, 765, 912, 962
BmgBI	CACGTC	1 cut(s)	259
BmiI	GGNNCC	2 cut(s)	303, 1056
BmrFI	CCNGG	6 cut(s)	75, 225, 275, 765, 912, 962
BmrI	ACTGGG	1 cut(s)	642
BmsI	GCATC	3 cut(s)	436, 611, 925
BmuI	ACTGGG	1 cut(s)	642
BpmI	CTGGAG	1 cut(s)	731
BpuEI	CTTGAG	1 cut(s)	1139
BpuMI	CCSGG	5 cut(s)	75, 225, 275, 912, 962
BsaBI	GATNNNNATC	1 cut(s)	527
BsaI	GGTCTC	1 cut(s)	1324
BsaJI	CCNNGG	6 cut(s)	142, 223, 282, 763, 910, 969
BsaWI	WCCGGW	2 cut(s)	370, 480
BsaXI	ACNNNNNCTCC	2 cut(s)	702, 732
Bsc4I	CCNNNNNNNGG	2 cut(s)	377, 1064
Bse118I	RCCGGY	2 cut(s)	101, 110
Bse1I	ACTGG	5 cut(s)	362, 648, 755, 780, 793
Bse8I	GATNNNNATC	1 cut(s)	527
BseBI	CCWGG	1 cut(s)	765
BseDI	CCNNGG	6 cut(s)	142, 223, 282, 763, 910, 969
BseGI	GGATG	4 cut(s)	478, 510, 1165, 1197
BseJI	GATNNNNATC	1 cut(s)	527
BseLI	CCNNNNNNNGG	2 cut(s)	377, 1064
BseNI	ACTGG	5 cut(s)	362, 648, 755, 780, 793
BseRI	GAGGAG	5 cut(s)	187, 254, 299, 302, 1193
BseX3I	CGGCCG	1 cut(s)	112
BseXI	GCAGC	5 cut(s)	106, 586, 793, 1096, 1273
BsgI	GTGCAG	1 cut(s)	833
Bsh1285I	CGRYCG	2 cut(s)	111, 115
BshFI	GGCC	3 cut(s)	114, 281, 622
BsiEI	CGRYCG	2 cut(s)	111, 115
BsiSI	CCGG	9 cut(s)	74, 102, 111, 225, 274, 371, 481, 912, 961
BslI	CCNNNNNNNGG	2 cut(s)	377, 1064
BsmAI	GTCTC	5 cut(s)	19, 140, 709, 1191, 1324
BsmI	GAATGC	1 cut(s)	363
BsnI	GGCC	3 cut(s)	114, 281, 622
Bso31I	GGTCTC	1 cut(s)	1324
Bsp143I	GATC	4 cut(s)	528, 795, 1231, 1278
BspACI	CCGC	5 cut(s)	99, 163, 228, 809, 915
BspANI	GGCC	3 cut(s)	114, 281, 622
BspLI	GGNNCC	2 cut(s)	303, 1056
BspMAI	CTGCAG	1 cut(s)	1114
BspMI	ACCTGC	2 cut(s)	168, 855
BspQI	GCTCTTC	1 cut(s)	1165
BspTNI	GGTCTC	1 cut(s)	1324
BsrFI	RCCGGY	2 cut(s)	101, 110
BsrI	ACTGG	5 cut(s)	362, 648, 755, 780, 793
BssAI	RCCGGY	2 cut(s)	101, 110
BssECI	CCNNGG	6 cut(s)	142, 223, 282, 763, 910, 969
BssMI	GATC	4 cut(s)	528, 795, 1231, 1278
BssT1I	CCWWGG	2 cut(s)	142, 969
Bst2UI	CCWGG	1 cut(s)	765
Bst4CI	ACNGT	3 cut(s)	155, 251, 1051
Bst6I	CTCTTC	5 cut(s)	143, 831, 889, 969, 1165
BstAPI	GCANNNNNTGC	2 cut(s)	358, 1265
BstC8I	GCNNGC	5 cut(s)	183, 411, 870, 1310, 1314
BstDEI	CTNAG	1 cut(s)	985
BstEII	GGTNACC	2 cut(s)	155, 842
BstF5I	GGATG	4 cut(s)	478, 510, 1165, 1197
BstH2I	RGCGCY	1 cut(s)	1309
BstHHI	GCGC	1 cut(s)	1308
BstKTI	GATC	4 cut(s)	531, 798, 1234, 1281
BstMAI	GTCTC	5 cut(s)	19, 140, 709, 1191, 1324
BstMBI	GATC	4 cut(s)	528, 795, 1231, 1278
BstMCI	CGRYCG	2 cut(s)	111, 115
BstMWI	GCNNNNNNNGC	3 cut(s)	358, 1106, 1265
BstNI	CCWGG	1 cut(s)	765
BstNSI	RCATGY	1 cut(s)	314
BstPI	GGTNACC	2 cut(s)	155, 842
BstSCI	CCNGG	6 cut(s)	73, 223, 273, 763, 910, 960
BstSFI	CTRYAG	1 cut(s)	1110
BstV1I	GCAGC	5 cut(s)	106, 586, 793, 1096, 1273
BstX2I	RGATCY	1 cut(s)	528
BstYI	RGATCY	1 cut(s)	528
BstZI	CGGCCG	1 cut(s)	112
BsuRI	GGCC	3 cut(s)	114, 281, 622
BtrI	CACGTC	1 cut(s)	259
BtsCI	GGATG	4 cut(s)	478, 510, 1165, 1197
BtsIMutI	CAGTG	1 cut(s)	1056
BveI	ACCTGC	2 cut(s)	168, 855
Cac8I	GCNNGC	5 cut(s)	183, 411, 870, 1310, 1314
CfoI	GCGC	1 cut(s)	1308
Cfr10I	RCCGGY	2 cut(s)	101, 110
Csp6I	GTAC	3 cut(s)	80, 559, 783
CviAII	CATG	3 cut(s)	311, 1045, 1235
CviQI	GTAC	3 cut(s)	80, 559, 783
DdeI	CTNAG	1 cut(s)	985
DpnI	GATC	4 cut(s)	530, 797, 1233, 1280
DpnII	GATC	4 cut(s)	528, 795, 1231, 1278
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	2 cut(s)	112, 620
EagI	CGGCCG	1 cut(s)	112
Eam1104I	CTCTTC	5 cut(s)	143, 831, 889, 969, 1165
EarI	CTCTTC	5 cut(s)	143, 831, 889, 969, 1165
EclXI	CGGCCG	1 cut(s)	112
Eco130I	CCWWGG	2 cut(s)	142, 969
Eco31I	GGTCTC	1 cut(s)	1324
Eco52I	CGGCCG	1 cut(s)	112
Eco57I	CTGAAG	2 cut(s)	34, 447
Eco91I	GGTNACC	2 cut(s)	155, 842
EcoO65I	GGTNACC	2 cut(s)	155, 842
EcoRI	GAATTC	1 cut(s)	1272
EcoRII	CCWGG	1 cut(s)	763
EcoT14I	CCWWGG	2 cut(s)	142, 969
ErhI	CCWWGG	2 cut(s)	142, 969
FaeI	CATG	3 cut(s)	314, 1048, 1238
FatI	CATG	3 cut(s)	310, 1044, 1234
FauI	CCCGC	2 cut(s)	156, 221
FauNDI	CATATG	1 cut(s)	1253
FbaI	TGATCA	1 cut(s)	1278
FblI	GTMKAC	1 cut(s)	1299
Fnu4HI	GCNGC	5 cut(s)	120, 600, 807, 1110, 1287
FokI	GGATG	4 cut(s)	485, 517, 1172, 1204
Fsp4HI	GCNGC	5 cut(s)	120, 600, 807, 1110, 1287
FspBI	CTAG	2 cut(s)	582, 1040
GlaI	GCGC	1 cut(s)	1307
GluI	GCNGC	5 cut(s)	120, 600, 807, 1110, 1287
GsuI	CTGGAG	1 cut(s)	731
HaeII	RGCGCY	1 cut(s)	1309
HaeIII	GGCC	3 cut(s)	114, 281, 622
HapII	CCGG	9 cut(s)	74, 102, 111, 225, 274, 371, 481, 912, 961
HhaI	GCGC	1 cut(s)	1308
Hin1II	CATG	3 cut(s)	314, 1048, 1238
Hin6I	GCGC	1 cut(s)	1306
HinP1I	GCGC	1 cut(s)	1306
HincII	GTYRAC	3 cut(s)	576, 760, 1003
HindII	GTYRAC	3 cut(s)	576, 760, 1003
HindIII	AAGCTT	1 cut(s)	399
HinfI	GANTC	4 cut(s)	54, 523, 717, 744
HpaI	GTTAAC	1 cut(s)	576
HpaII	CCGG	9 cut(s)	74, 102, 111, 225, 274, 371, 481, 912, 961
HphI	GGTGA	8 cut(s)	167, 257, 263, 765, 854, 908, 944, 1003
Hpy188I	TCNGA	5 cut(s)	53, 453, 522, 528, 1278
Hpy188III	TCNNGA	5 cut(s)	332, 748, 1019, 1229, 1322
Hpy99I	CGWCG	2 cut(s)	152, 155
HpyAV	CCTTC	2 cut(s)	315, 1002
HpyCH4III	ACNGT	3 cut(s)	155, 251, 1051
HpyCH4IV	ACGT	3 cut(s)	35, 258, 852
HpyCH4V	TGCA	4 cut(s)	602, 850, 1112, 1213
HpyF10VI	GCNNNNNNNGC	3 cut(s)	358, 1106, 1265
HpyF3I	CTNAG	1 cut(s)	985
HpySE526I	ACGT	3 cut(s)	35, 258, 852
Hsp92II	CATG	3 cut(s)	314, 1048, 1238
HspAI	GCGC	1 cut(s)	1306
Ksp22I	TGATCA	1 cut(s)	1278
KspAI	GTTAAC	1 cut(s)	576
Kzo9I	GATC	4 cut(s)	528, 795, 1231, 1278
LguI	GCTCTTC	1 cut(s)	1165
LmnI	GCTCC	6 cut(s)	225, 301, 418, 454, 1105, 1141
Lsp1109I	GCAGC	5 cut(s)	106, 586, 793, 1096, 1273
LweI	GCATC	3 cut(s)	436, 611, 925
MaeI	CTAG	2 cut(s)	582, 1040
MaeII	ACGT	3 cut(s)	35, 258, 852
MaeIII	GTNAC	4 cut(s)	155, 245, 842, 1009
MalI	GATC	4 cut(s)	530, 797, 1233, 1280
MboI	GATC	4 cut(s)	528, 795, 1231, 1278
MboII	GAAGA	7 cut(s)	130, 559, 692, 848, 876, 986, 1182
MfeI	CAATTG	1 cut(s)	606
MflI	RGATCY	1 cut(s)	528
MluCI	AATT	5 cut(s)	606, 723, 1062, 1272, 1337
MlyI	GAGTC	3 cut(s)	48, 711, 738
MroXI	GAANNNNTTC	1 cut(s)	1149
MseI	TTAA	3 cut(s)	387, 575, 1092
MslI	CAYNNNNRTG	3 cut(s)	315, 894, 1049
MspI	CCGG	9 cut(s)	74, 102, 111, 225, 274, 371, 481, 912, 961
MspR9I	CCNGG	6 cut(s)	75, 225, 275, 765, 912, 962
MunI	CAATTG	1 cut(s)	606
Mva1269I	GAATGC	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	765
MwoI	GCNNNNNNNGC	3 cut(s)	358, 1106, 1265
NciI	CCSGG	5 cut(s)	75, 225, 275, 912, 962
NdeI	CATATG	1 cut(s)	1253
NdeII	GATC	4 cut(s)	528, 795, 1231, 1278
NlaIII	CATG	3 cut(s)	314, 1048, 1238
NlaIV	GGNNCC	2 cut(s)	303, 1056
NmeAIII	GCCGAG	2 cut(s)	140, 307
NmuCI	GTSAC	4 cut(s)	155, 245, 842, 1009
NspI	RCATGY	1 cut(s)	314
OliI	CACNNNNGTG	1 cut(s)	894
PciSI	GCTCTTC	1 cut(s)	1165
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PctI	GAATGC	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	1149
PfeI	GAWTC	1 cut(s)	523
PfoI	TCCNGGA	2 cut(s)	273, 960
PkrI	GCNGC	5 cut(s)	121, 601, 808, 1111, 1288
PleI	GAGTC	3 cut(s)	48, 711, 738
PpsI	GAGTC	3 cut(s)	48, 711, 738
PsiI	TTATAA	1 cut(s)	654
Psp1406I	AACGTT	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	763
PspEI	GGTNACC	2 cut(s)	155, 842
PspGI	CCWGG	1 cut(s)	763
PspN4I	GGNNCC	2 cut(s)	303, 1056
PstI	CTGCAG	1 cut(s)	1114
PsuI	RGATCY	1 cut(s)	528
RsaI	GTAC	3 cut(s)	81, 560, 784
RsaNI	GTAC	3 cut(s)	80, 559, 783
RseI	CAYNNNNRTG	3 cut(s)	315, 894, 1049
SapI	GCTCTTC	1 cut(s)	1165
SaqAI	TTAA	3 cut(s)	387, 575, 1092
SatI	GCNGC	5 cut(s)	120, 600, 807, 1110, 1287
Sau3AI	GATC	4 cut(s)	528, 795, 1231, 1278
SchI	GAGTC	3 cut(s)	48, 711, 738
ScrFI	CCNGG	6 cut(s)	75, 225, 275, 765, 912, 962
SfaNI	GCATC	3 cut(s)	436, 611, 925
SfcI	CTRYAG	1 cut(s)	1110
SmiMI	CAYNNNNRTG	3 cut(s)	315, 894, 1049
SmlI	CTYRAG	1 cut(s)	1154
SmoI	CTYRAG	1 cut(s)	1154
Sse9I	AATT	5 cut(s)	606, 723, 1062, 1272, 1337
SsiI	CCGC	5 cut(s)	99, 163, 228, 809, 915
SspMI	CTAG	2 cut(s)	582, 1040
StyD4I	CCNGG	6 cut(s)	73, 223, 273, 763, 910, 960
StyI	CCWWGG	2 cut(s)	142, 969
TaaI	ACNGT	3 cut(s)	155, 251, 1051
TaiI	ACGT	3 cut(s)	38, 261, 855
TaqI	TCGA	4 cut(s)	107, 315, 794, 1292
TaqII	GACCGA	1 cut(s)	1348
TasI	AATT	5 cut(s)	606, 723, 1062, 1272, 1337
TatI	WGTACW	2 cut(s)	558, 782
TfiI	GAWTC	1 cut(s)	523
Tru1I	TTAA	3 cut(s)	387, 575, 1092
Tru9I	TTAA	3 cut(s)	387, 575, 1092
TscAI	CASTG	1 cut(s)	1056
TseFI	GTSAC	4 cut(s)	155, 245, 842, 1009
TseI	GCWGC	5 cut(s)	119, 599, 806, 1109, 1286
Tsp45I	GTSAC	4 cut(s)	155, 245, 842, 1009
TspDTI	ATGAA	4 cut(s)	454, 555, 560, 630
TspRI	CASTG	1 cut(s)	1056
XapI	RAATTY	3 cut(s)	723, 1272, 1337
XceI	RCATGY	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	1299
XmnI	GAANNNNTTC	1 cut(s)	1149
XspI	CTAG	2 cut(s)	582, 1040

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.