Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001706

Physical Location & Seq

Genomic Coordinates Forward (+)

82497762 .. 82499728

Gene Structure 1967 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53574

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGATTCAATTTCGATATCCTAGTCTTAAGGTTTCTTTGCCAGGTGGGAAAACAGAGGATGGAGACAAGGATGATGGTGACACAGCAACAAGAGAAGCGAAAGAGGAGATTGGTTTGGATCCTAAGCTTGTGAATGTTGTCACTGTTCTTGAACCATTTTTGTCAAAGCACCTACTGAGAGTTGTACCTGTTATCGGTATACTTAACGATAAGGAAGCATTCAAGCCTGCTCCAAATCCGGCCGAAGTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006104 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0010945 GO:0015936 GO:0015937 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

84

Amino Acids

9.2

Weight (kDa)

4.95

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	10 - 56	1.4e-08	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT2G33980 AT2G33980 AT2G33980 AT2G33980
fragaria_vesca	FvH4_3g08140
malus_domestica	MD05G1305000.v1.1 MD10G1284300.v1.1
prunus_persica	Prupe.4G057200_v2.0.a1
pyrus_communis	pycom05g28230 pycom10g23720
rosa_chinensis	RchiOBHm_Chr1g0373431 RchiOBHm_Chr2g0139421 RchiOBHm_Chr2g0167991 RchiOBHm_Chr2g0168001 RchiOBHm_Chr5g0010041 RchiOBHm_Chr5g0010051
rosa_laevigata	RLG00000031721 RLG00000031722
rosa_multiflora	Rmu_co8078996.1_g000001 Rmu_sc0001896.1_g000034 Rmu_sc0002275.1_g000008 Rmu_sc0016197.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066120 Rroxscaffold_1G00066130 Rroxscaffold_2G00103220
rosa_rugosa	Rorug04G0448800 Rorug04G0448900 Rorug04G0448900 Rorug04G0448900
rosa_samantha	Rh3BG108900 Rh3CG348700 Rh5AG079600 Rh5AG079700 Rh5BG074400 Rh5BG074500 Rh5CG087000 Rh5CG087100 Rh5DG075100 Rh5DG075200
rosa_wichuraiana	Rw3G023780 Rw5G007370 Rw5G007380 Rw7G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	199
AclWI	GGATC	2 cut(s)	113, 126
AcoI	YGGCCR	1 cut(s)	240
AfaI	GTAC	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	194
AflII	CTTAAG	1 cut(s)	26
AgsI	TTSAA	3 cut(s)	8, 152, 223
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	2 cut(s)	113, 126
AoxI	GGCC	1 cut(s)	240
AsuHPI	GGTGA	1 cut(s)	89
BamHI	GGATCC	1 cut(s)	118
BccI	CCATC	2 cut(s)	53, 68
BciT130I	CCWGG	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	1 cut(s)	21
BfrI	CTTAAG	1 cut(s)	26
Bme1390I	CCNGG	1 cut(s)	42
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
BseBI	CCWGG	1 cut(s)	42
BseGI	GGATG	2 cut(s)	64, 76
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	119
BseX3I	CGGCCG	1 cut(s)	240
Bsh1285I	CGRYCG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	242
BsiEI	CGRYCG	1 cut(s)	243
BsiSI	CCGG	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	57
BsmI	GAATGC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	242
Bsp143I	GATC	1 cut(s)	118
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	2 cut(s)	113, 126
BspTI	CTTAAG	1 cut(s)	26
BssMI	GATC	1 cut(s)	118
BssNAI	GTATAC	1 cut(s)	200
Bst1107I	GTATAC	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	145
BstAFI	CTTAAG	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	2 cut(s)	123, 176
BstF5I	GGATG	2 cut(s)	64, 76
BstKTI	GATC	1 cut(s)	121
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	118
BstMCI	CGRYCG	1 cut(s)	243
BstNI	CCWGG	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BstZ17I	GTATAC	1 cut(s)	200
BstZI	CGGCCG	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	242
BtsCI	GGATG	2 cut(s)	64, 76
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	185
CviJI	RGCY	3 cut(s)	127, 226, 242
CviKI_1	RGCY	3 cut(s)	127, 226, 242
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	2 cut(s)	123, 176
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
EaeI	YGGCCR	1 cut(s)	240
EagI	CGGCCG	1 cut(s)	240
EclXI	CGGCCG	1 cut(s)	240
Eco32I	GATATC	1 cut(s)	17
Eco52I	CGGCCG	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	40
EcoRV	GATATC	1 cut(s)	17
FaiI	YATR	1 cut(s)	200
FblI	GTMKAC	1 cut(s)	199
FokI	GGATG	2 cut(s)	71, 83
FspBI	CTAG	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	1 cut(s)	239
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	1 cut(s)	200
HpyCH4III	ACNGT	1 cut(s)	145
HpyF3I	CTNAG	2 cut(s)	123, 176
Kzo9I	GATC	1 cut(s)	118
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	4 cut(s)	27, 54, 201, 240
MaeI	CTAG	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	77, 139
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MflI	RGATCY	1 cut(s)	118
MluCI	AATT	1 cut(s)	8
MnlI	CCTC	2 cut(s)	49, 97
MseI	TTAA	2 cut(s)	27, 204
MspCI	CTTAAG	1 cut(s)	26
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	42
Mva1269I	GAATGC	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	42
NdeII	GATC	1 cut(s)	118
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	2 cut(s)	77, 139
PctI	GAATGC	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	4
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	27, 204
Sau3AI	GATC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	42
SetI	ASST	5 cut(s)	33, 46, 129, 174, 190
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	1 cut(s)	8
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	145
TaqI	TCGA	1 cut(s)	13
TasI	AATT	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	27, 204
Tru9I	TTAA	2 cut(s)	27, 204
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	2 cut(s)	77, 139
Tsp45I	GTSAC	2 cut(s)	77, 139
TspRI	CASTG	1 cut(s)	148
Vha464I	CTTAAG	1 cut(s)	26
XmiI	GTMKAC	1 cut(s)	199
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.