Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001706

Physical Location & Seq

Genomic Coordinates Reverse (-)

10109500 .. 10111738

Gene Structure 2239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G28960.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTTTTTGCTTTATCGTAGGCTTCCTTCATTTGCACGAACAACAACAACAACCCTTCTCTGCAAATCTATGGAGCCTGCGATAACAGCGACTTCTTCTTCTTCTTTCGGTGGTGGCTCTTCTCGTCTCGCCGCTTTAGCCCAGCAACTTCGCCAATACAAGCCCCCACCTTCTTCATCGTTCGATGACTCCGAGGAGATGCAGACAGATCAGGAGACCGCTGGGAAAGTCGTTTCTCAGGTTGGGTTTCAGGAATCTATTGCTCCTCTTTCGAAAGACCCTGATAGGTTTAAACCCAAGAGAGCCGCTGTGTTGATCTGTCTCTTTGAAGGAGATGATGGTGATTTGCGTGTTATTCTTACTAAGAGATCTTCCAAATTGTCTACTCACTCTGGAGAAGTTTCATTGCCAGGTGGTAAAGCGGAGGAGGATGATAAAGATGATGGGATGACTGCTACCAGAGAGGCTGAGGAAGAGATTGGATTGGACCCTTCTCTTGTTGATGTTGTTACTTCTCTTGAACCATTTCTGTCTAAGCATCTTCTTAGAGTAATTCCTGTGATAGGCATCTTGAGGGACAAAAATAAATTCAATCCGATACCAAATCCTGGGGAAGTGGAAGCTGTGTTTGATGCACCCTTGGAAATGTTCCTTAAGGATGAGAATCGAAGATCTGAAGAGAGAGAGTGGATGGGTGAAAAGTATTTGATCCATTACTTTGACTACAGAACAGGAGATAAGGATTATATGATATGGGGTTTAACTGCTGGGATTTTGATCAGAGCTGCATCTGTGACTTATGAAAGACCACCTGCTTTTATCGAGCAGTGCCCGAAGTTTAAGTACCCTAAAATGGTAGAAAAACATACTTGTATGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006104 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0010945 GO:0015936 GO:0015937 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

293

Amino Acids

32.82

Weight (kDa)

5.35

Isoelectric Point (pI)

56.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	100 - 223	7.7e-14	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT2G33980 AT2G33980 AT2G33980 AT2G33980
fragaria_vesca	FvH4_3g08140
malus_domestica	MD05G1305000.v1.1 MD10G1284300.v1.1
prunus_persica	Prupe.4G057200_v2.0.a1
pyrus_communis	pycom05g28230 pycom10g23720
rosa_chinensis	RchiOBHm_Chr1g0373431 RchiOBHm_Chr2g0139421 RchiOBHm_Chr2g0167991 RchiOBHm_Chr2g0168001 RchiOBHm_Chr5g0010041 RchiOBHm_Chr5g0010051
rosa_laevigata	RLG00000031721 RLG00000031722
rosa_multiflora	Rmu_co8078996.1_g000001 Rmu_sc0001896.1_g000034 Rmu_sc0002275.1_g000008 Rmu_sc0016197.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066120 Rroxscaffold_1G00066130 Rroxscaffold_2G00103220
rosa_rugosa	Rorug04G0448800 Rorug04G0448900 Rorug04G0448900 Rorug04G0448900
rosa_samantha	Rh3BG108900 Rh3CG348700 Rh5AG079600 Rh5AG079700 Rh5BG074400 Rh5BG074500 Rh5CG087000 Rh5CG087100 Rh5DG075100 Rh5DG075200
rosa_wichuraiana	Rw3G023780 Rw5G007370 Rw5G007380 Rw7G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	820
Acc36I	ACCTGC	1 cut(s)	820
AccB7I	CCANNNNNTGG	1 cut(s)	608
AccI	GTMKAC	1 cut(s)	383
AciI	CCGC	4 cut(s)	132, 219, 306, 422
AclWI	GGATC	1 cut(s)	703
AcsI	RAATTY	1 cut(s)	587
AcuI	CTGAAG	1 cut(s)	696
AfaI	GTAC	1 cut(s)	845
AfiI	CCNNNNNNNGG	3 cut(s)	563, 608, 853
AflII	CTTAAG	1 cut(s)	653
AgsI	TTSAA	3 cut(s)	329, 521, 592
AjnI	CCWGG	2 cut(s)	409, 607
AluBI	AGCT	2 cut(s)	623, 785
AluI	AGCT	2 cut(s)	623, 785
Alw26I	GTCTC	3 cut(s)	131, 209, 326
AlwI	GGATC	1 cut(s)	703
ApeKI	GCWGC	1 cut(s)	785
ApoI	RAATTY	1 cut(s)	587
Asp700I	GAANNNNTTC	1 cut(s)	525
AspS9I	GGNCC	1 cut(s)	487
AsuHPI	GGTGA	2 cut(s)	353, 707
AsuII	TTCGAA	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	487
BaeGI	GKGCMC	1 cut(s)	833
BarI	GAAGNNNNNNTAC	4 cut(s)	10, 42, 827, 859
BbvCI	CCTCAGC	1 cut(s)	468
BbvI	GCAGC	1 cut(s)	772
BccI	CCATC	3 cut(s)	332, 437, 685
BciT130I	CCWGG	2 cut(s)	411, 609
BclI	TGATCA	1 cut(s)	777
BcoDI	GTCTC	3 cut(s)	131, 209, 326
BfmI	CTRYAG	1 cut(s)	724
BfrI	CTTAAG	1 cut(s)	653
BfuAI	ACCTGC	1 cut(s)	820
BglII	AGATCT	2 cut(s)	368, 671
BisI	GCNGC	3 cut(s)	132, 306, 786
BlsI	GCNGC	3 cut(s)	133, 307, 787
Bme1390I	CCNGG	2 cut(s)	411, 609
Bme18I	GGWCC	1 cut(s)	487
BmgT120I	GGNCC	1 cut(s)	487
BmiI	GGNNCC	2 cut(s)	75, 489
BmrFI	CCNGG	2 cut(s)	411, 609
BmsI	GCATC	5 cut(s)	189, 547, 576, 622, 797
BpmI	CTGGAG	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	468
Bpu14I	TTCGAA	1 cut(s)	272
BpuEI	CTTGAG	1 cut(s)	592
BsaBI	GATNNNNATC	3 cut(s)	566, 663, 776
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	3 cut(s)	192, 608, 639
Bsc4I	CCNNNNNNNGG	3 cut(s)	563, 608, 853
Bse3DI	GCAATG	1 cut(s)	404
Bse8I	GATNNNNATC	3 cut(s)	566, 663, 776
BseBI	CCWGG	2 cut(s)	411, 609
BseDI	CCNNGG	3 cut(s)	192, 608, 639
BseGI	GGATG	4 cut(s)	436, 453, 664, 696
BseJI	GATNNNNATC	3 cut(s)	566, 663, 776
BseLI	CCNNNNNNNGG	3 cut(s)	563, 608, 853
BseMI	GCAATG	1 cut(s)	404
BseMII	CTCAG	2 cut(s)	251, 459
BseRI	GAGGAG	3 cut(s)	209, 255, 440
BseSI	GKGCMC	1 cut(s)	833
BseXI	GCAGC	1 cut(s)	772
BseYI	CCCAGC	3 cut(s)	141, 221, 767
BslFI	GGGAC	1 cut(s)	590
BslI	CCNNNNNNNGG	3 cut(s)	563, 608, 853
BsmAI	GTCTC	3 cut(s)	131, 209, 326
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	590
Bso31I	GGTCTC	1 cut(s)	209
Bsp119I	TTCGAA	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	833
Bsp143I	GATC	6 cut(s)	208, 315, 368, 671, 708, 777
BspACI	CCGC	4 cut(s)	132, 219, 306, 422
BspCNI	CTCAG	2 cut(s)	250, 460
BspLI	GGNNCC	2 cut(s)	75, 489
BspMI	ACCTGC	1 cut(s)	820
BspPI	GGATC	1 cut(s)	703
BspQI	GCTCTTC	1 cut(s)	124
BspT104I	TTCGAA	1 cut(s)	272
BspTI	CTTAAG	1 cut(s)	653
BspTNI	GGTCTC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	404
BssECI	CCNNGG	3 cut(s)	192, 608, 639
BssMI	GATC	6 cut(s)	208, 315, 368, 671, 708, 777
BssT1I	CCWWGG	1 cut(s)	639
Bst2UI	CCWGG	2 cut(s)	411, 609
Bst6I	CTCTTC	3 cut(s)	124, 468, 672
BstAFI	CTTAAG	1 cut(s)	653
BstBI	TTCGAA	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	5 cut(s)	237, 363, 468, 534, 545
BstENI	CCTNNNNNAGG	1 cut(s)	561
BstF5I	GGATG	4 cut(s)	436, 453, 664, 696
BstKTI	GATC	6 cut(s)	211, 318, 371, 674, 711, 780
BstMAI	GTCTC	3 cut(s)	131, 209, 326
BstMBI	GATC	6 cut(s)	208, 315, 368, 671, 708, 777
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 137
BstNI	CCWGG	2 cut(s)	411, 609
BstSCI	CCNGG	2 cut(s)	409, 607
BstSFI	CTRYAG	1 cut(s)	724
BstSLI	GKGCMC	1 cut(s)	833
BstV1I	GCAGC	1 cut(s)	772
BstX2I	RGATCY	2 cut(s)	368, 671
BstYI	RGATCY	2 cut(s)	368, 671
BtsCI	GGATG	4 cut(s)	436, 453, 664, 696
BtsI	GCAGTG	1 cut(s)	833
BtsIMutI	CAGTG	1 cut(s)	833
BveI	ACCTGC	1 cut(s)	820
Cac8I	GCNNGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	487
Csp6I	GTAC	1 cut(s)	844
CviJI	RGCY	9 cut(s)	22, 76, 117, 140, 163, 305, 467, 623, 785
CviKI_1	RGCY	9 cut(s)	22, 76, 117, 140, 163, 305, 467, 623, 785
CviQI	GTAC	1 cut(s)	844
DdeI	CTNAG	5 cut(s)	237, 363, 468, 534, 545
DpnI	GATC	6 cut(s)	210, 317, 370, 673, 710, 779
DpnII	GATC	6 cut(s)	208, 315, 368, 671, 708, 777
DraI	TTTAAA	1 cut(s)	292
Eam1104I	CTCTTC	3 cut(s)	124, 468, 672
EarI	CTCTTC	3 cut(s)	124, 468, 672
Eco130I	CCWWGG	1 cut(s)	639
Eco31I	GGTCTC	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	487
Eco57I	CTGAAG	1 cut(s)	696
EcoNI	CCTNNNNNAGG	1 cut(s)	561
EcoRII	CCWGG	2 cut(s)	409, 607
EcoT14I	CCWWGG	1 cut(s)	639
ErhI	CCWWGG	1 cut(s)	639
Esp3I	CGTCTC	1 cut(s)	131
FaiI	YATR	7 cut(s)	71, 747, 749, 754, 801, 867, 875
FaqI	GGGAC	1 cut(s)	590
FbaI	TGATCA	1 cut(s)	777
FblI	GTMKAC	1 cut(s)	383
Fnu4HI	GCNGC	3 cut(s)	132, 306, 786
FokI	GGATG	4 cut(s)	443, 460, 671, 703
Fsp4HI	GCNGC	3 cut(s)	132, 306, 786
GluI	GCNGC	3 cut(s)	132, 306, 786
GsaI	CCCAGC	3 cut(s)	145, 225, 771
GsuI	CTGGAG	1 cut(s)	414
HinfI	GANTC	3 cut(s)	188, 254, 664
HphI	GGTGA	2 cut(s)	353, 707
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188I	TCNGA	4 cut(s)	193, 597, 676, 782
Hpy188III	TCNNGA	5 cut(s)	212, 251, 393, 518, 571
Hpy8I	GTNNAC	1 cut(s)	384
HpyAV	CCTTC	5 cut(s)	36, 65, 180, 323, 501
HpyCH4V	TGCA	5 cut(s)	35, 63, 202, 635, 788
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 137
HpyF3I	CTNAG	5 cut(s)	237, 363, 468, 534, 545
Ksp22I	TGATCA	1 cut(s)	777
Kzo9I	GATC	6 cut(s)	208, 315, 368, 671, 708, 777
LguI	GCTCTTC	1 cut(s)	124
LmnI	GCTCC	2 cut(s)	73, 268
Lsp1109I	GCAGC	1 cut(s)	772
LweI	GCATC	5 cut(s)	189, 547, 576, 622, 797
MaeIII	GTNAC	2 cut(s)	508, 793
MalI	GATC	6 cut(s)	210, 317, 370, 673, 710, 779
MboI	GATC	6 cut(s)	208, 315, 368, 671, 708, 777
MflI	RGATCY	2 cut(s)	368, 671
MhlI	GDGCHC	1 cut(s)	833
MluCI	AATT	3 cut(s)	377, 552, 587
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	7 cut(s)	187, 276, 418, 421, 457, 463, 567
MroXI	GAANNNNTTC	1 cut(s)	525
MseI	TTAA	5 cut(s)	291, 654, 761, 840, 880
MspA1I	CMGCKG	2 cut(s)	221, 308
MspCI	CTTAAG	1 cut(s)	653
MspR9I	CCNGG	2 cut(s)	411, 609
MssI	GTTTAAAC	1 cut(s)	292
MvaI	CCWGG	2 cut(s)	411, 609
MwoI	GCNNNNNNNGC	2 cut(s)	86, 137
NdeII	GATC	6 cut(s)	208, 315, 368, 671, 708, 777
NlaIV	GGNNCC	2 cut(s)	75, 489
NmuCI	GTSAC	1 cut(s)	793
NspV	TTCGAA	1 cut(s)	272
PaqCI	CACCTGC	1 cut(s)	820
PciSI	GCTCTTC	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	2 cut(s)	254, 664
PflMI	CCANNNNNTGG	1 cut(s)	608
PkrI	GCNGC	3 cut(s)	133, 307, 787
PleI	GAGTC	1 cut(s)	182
PmeI	GTTTAAAC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	182
Psp6I	CCWGG	2 cut(s)	409, 607
PspFI	CCCAGC	3 cut(s)	141, 221, 767
PspGI	CCWGG	2 cut(s)	409, 607
PspN4I	GGNNCC	2 cut(s)	75, 489
PspPI	GGNCC	1 cut(s)	487
PsuI	RGATCY	2 cut(s)	368, 671
RsaI	GTAC	1 cut(s)	845
RsaNI	GTAC	1 cut(s)	844
SapI	GCTCTTC	1 cut(s)	124
SaqAI	TTAA	5 cut(s)	291, 654, 761, 840, 880
SatI	GCNGC	3 cut(s)	132, 306, 786
Sau3AI	GATC	6 cut(s)	208, 315, 368, 671, 708, 777
Sau96I	GGNCC	1 cut(s)	487
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	411, 609
SduI	GDGCHC	1 cut(s)	833
SetI	ASST	7 cut(s)	172, 243, 290, 415, 625, 787, 814
SfaNI	GCATC	5 cut(s)	189, 547, 576, 622, 797
SfcI	CTRYAG	1 cut(s)	724
SfuI	TTCGAA	1 cut(s)	272
SinI	GGWCC	1 cut(s)	487
SmlI	CTYRAG	2 cut(s)	571, 653
SmoI	CTYRAG	2 cut(s)	571, 653
Sse9I	AATT	3 cut(s)	377, 552, 587
SsiI	CCGC	4 cut(s)	132, 219, 306, 422
StyD4I	CCNGG	2 cut(s)	409, 607
StyI	CCWWGG	1 cut(s)	639
TaqI	TCGA	4 cut(s)	183, 272, 667, 822
TasI	AATT	3 cut(s)	377, 552, 587
TauI	GCSGC	2 cut(s)	134, 308
TfiI	GAWTC	2 cut(s)	254, 664
Tru1I	TTAA	5 cut(s)	291, 654, 761, 840, 880
Tru9I	TTAA	5 cut(s)	291, 654, 761, 840, 880
TscAI	CASTG	1 cut(s)	833
TseFI	GTSAC	1 cut(s)	793
TseI	GCWGC	1 cut(s)	785
Tsp45I	GTSAC	1 cut(s)	793
TspDTI	ATGAA	4 cut(s)	18, 165, 393, 816
TspRI	CASTG	1 cut(s)	833
Van91I	CCANNNNNTGG	1 cut(s)	608
Vha464I	CTTAAG	1 cut(s)	653
VpaK11BI	GGWCC	1 cut(s)	487
XagI	CCTNNNNNAGG	1 cut(s)	561
XapI	RAATTY	1 cut(s)	587
XmiI	GTMKAC	1 cut(s)	383
XmnI	GAANNNNTTC	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.