Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002275.1

Orthogroup ID

OG0001706

Physical Location & Seq

Genomic Coordinates Forward (+)

47869 .. 50298

Gene Structure 2430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002275.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

atgagttcaccaaaccttgaacagagacttcaaacgttagcacgacacttcagactccagagacaagtcaagccgggtgtaccaaccaccaccaccgccggttcgaccggccgagctgccgttctggtgtgtctcttccaaggcgacgacggtgacctgcgggtcattctaacaaagcgagcctcaactctctcctctcactctggcgaagtttcgcttcccggcgggaaaagagaggagggtgacggtgatgacgtggacacggctctccgggaggccgaggaggagattggattggagccttcacatgtcgatgttgttgctgttcttgaaccctttgtgaacaagcaaggaatgccagttattcctgttattgccatacttaatgtaaaggaagctttcaaggcagctccaaatcctgctgaagtggaagcagtatttgatgctccgatggaaatgttcatcaaggatgagaaccggagagtagagatgagagagtggatggggaacaagtatctgattcagatctttgactatgaaatgaagaataagaagtacaaaatatgggggttaactgctagtatattgataagggctgcatcaattgtatatgaacggccaccaccttttgtagagcaaaatcccagttataaggttgcttttggtgtagaaagtgaagataatcaaatgggttcaagcaaccttgaacagagactccaaattttagcacaagattttagactccagaaaccagtcaaccctggtctatcacctaccagtacaactggctcgatcaaaagagctgcggttctggtgtgtctattacaaggggaagagggtgacctgcacgttattctcacaaagcgagcctcaactctctcttctcactctggtgaggtggctctccccggcggtaaaagagagcaaggtgatgctgatgatgtggacacagctctccgggaggccaatgaagagattggcttagacccttcccaagtcaacattgtcaccattcttgaaccttttgtaaacaagctaggcatgactgtggttcctgtaattggcttactttctaacaaggaagcatttaatccagctccaaatgctgcagaagtggaagcaatcttttatgctccattagaaatgtttctcaaggatgagaacagaagagcagaggagagagaatggatgggagacaaatatctgttacaacatttctactttcaagatcatggtatagagtatgacatatgggctataactgctggaattctgatcaaggctgcttcgattgtctaccagcgccagccagcatttcttgaacagagaccgaaattttggagtggaactgctcataataccacagcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

456

Amino Acids

50.57

Weight (kDa)

5.12

Isoelectric Point (pI)

53.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT2G33980 AT2G33980 AT2G33980 AT2G33980
fragaria_vesca	FvH4_3g08140
malus_domestica	MD05G1305000.v1.1 MD10G1284300.v1.1
prunus_persica	Prupe.4G057200_v2.0.a1
pyrus_communis	pycom05g28230 pycom10g23720
rosa_chinensis	RchiOBHm_Chr1g0373431 RchiOBHm_Chr2g0139421 RchiOBHm_Chr2g0167991 RchiOBHm_Chr2g0168001 RchiOBHm_Chr5g0010041 RchiOBHm_Chr5g0010051
rosa_laevigata	RLG00000031721 RLG00000031722
rosa_multiflora	Rmu_co8078996.1_g000001 Rmu_sc0001896.1_g000034 Rmu_sc0002275.1_g000008 Rmu_sc0016197.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066120 Rroxscaffold_1G00066130 Rroxscaffold_2G00103220
rosa_rugosa	Rorug04G0448800 Rorug04G0448900 Rorug04G0448900 Rorug04G0448900
rosa_samantha	Rh3BG108900 Rh3CG348700 Rh5AG079600 Rh5AG079700 Rh5BG074400 Rh5BG074500 Rh5CG087000 Rh5CG087100 Rh5DG075100 Rh5DG075200
rosa_wichuraiana	Rw3G023780 Rw5G007370 Rw5G007380 Rw7G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	651
AasI	GACNNNNNNGTC	1 cut(s)	161
Acc36I	ACCTGC	2 cut(s)	165, 852
AccI	GTMKAC	1 cut(s)	1296
AciI	CCGC	5 cut(s)	96, 160, 225, 806, 912
AclI	AACGTT	1 cut(s)	35
AcoI	YGGCCR	2 cut(s)	109, 617
AcsI	RAATTY	3 cut(s)	720, 1269, 1334
AcuI	CTGAAG	2 cut(s)	34, 444
AfaI	GTAC	3 cut(s)	81, 557, 781
AfiI	CCNNNNNNNGG	1 cut(s)	1061
AflIII	ACRYGT	1 cut(s)	307
AgsI	TTSAA	9 cut(s)	20, 32, 332, 403, 696, 707, 1019, 1226, 1322
AjiI	CACGTC	1 cut(s)	256
AjnI	CCWGG	1 cut(s)	760
AleI	CACNNNNGTG	1 cut(s)	891
AloI	GAACNNNNNNTCC	2 cut(s)	699, 731
AluBI	AGCT	7 cut(s)	116, 398, 410, 803, 953, 1036, 1097
AluI	AGCT	7 cut(s)	116, 398, 410, 803, 953, 1036, 1097
Alw26I	GTCTC	6 cut(s)	19, 55, 137, 706, 1188, 1321
AoxI	GGCC	4 cut(s)	109, 276, 617, 963
ApeKI	GCWGC	6 cut(s)	116, 407, 596, 803, 1106, 1283
ApoI	RAATTY	3 cut(s)	720, 1269, 1334
ArsI	GACNNNNNNTTYG	2 cut(s)	1320, 1352
Asp700I	GAANNNNTTC	1 cut(s)	1146
AspLEI	GCGC	1 cut(s)	1305
AsuC2I	CCSGG	5 cut(s)	75, 222, 272, 909, 959
AsuHPI	GGTGA	8 cut(s)	164, 254, 260, 762, 851, 905, 941, 1000
BbvI	GCAGC	6 cut(s)	103, 419, 583, 790, 1093, 1270
BccI	CCATC	3 cut(s)	445, 496, 1183
BceAI	ACGGC	3 cut(s)	104, 279, 632
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BciT130I	CCWGG	1 cut(s)	762
BclI	TGATCA	1 cut(s)	1275
BcnI	CCSGG	5 cut(s)	75, 222, 272, 909, 959
BcoDI	GTCTC	6 cut(s)	19, 55, 137, 706, 1188, 1321
BfaI	CTAG	2 cut(s)	579, 1037
BfmI	CTRYAG	1 cut(s)	1107
BfoI	RGCGCY	1 cut(s)	1306
BfuAI	ACCTGC	2 cut(s)	165, 852
BglII	AGATCT	1 cut(s)	525
BisI	GCNGC	6 cut(s)	117, 408, 597, 804, 1107, 1284
BlsI	GCNGC	6 cut(s)	118, 409, 598, 805, 1108, 1285
Bme1390I	CCNGG	6 cut(s)	75, 222, 272, 762, 909, 959
BmgBI	CACGTC	1 cut(s)	256
BmiI	GGNNCC	2 cut(s)	300, 1053
BmrFI	CCNGG	6 cut(s)	75, 222, 272, 762, 909, 959
BmrI	ACTGGG	1 cut(s)	639
BmsI	GCATC	3 cut(s)	433, 608, 922
BmuI	ACTGGG	1 cut(s)	639
BpmI	CTGGAG	2 cut(s)	41, 728
BpuEI	CTTGAG	1 cut(s)	1136
BpuMI	CCSGG	5 cut(s)	75, 222, 272, 909, 959
BsaBI	GATNNNNATC	1 cut(s)	524
BsaI	GGTCTC	1 cut(s)	1321
BsaJI	CCNNGG	4 cut(s)	139, 279, 760, 907
BsaWI	WCCGGW	1 cut(s)	477
BsaXI	ACNNNNNCTCC	2 cut(s)	699, 729
Bsc4I	CCNNNNNNNGG	1 cut(s)	1061
Bse118I	RCCGGY	2 cut(s)	98, 107
Bse1I	ACTGG	5 cut(s)	359, 645, 752, 777, 790
Bse8I	GATNNNNATC	1 cut(s)	524
BseBI	CCWGG	1 cut(s)	762
BseDI	CCNNGG	4 cut(s)	139, 279, 760, 907
BseGI	GGATG	4 cut(s)	475, 507, 1162, 1194
BseJI	GATNNNNATC	1 cut(s)	524
BseLI	CCNNNNNNNGG	1 cut(s)	1061
BseNI	ACTGG	5 cut(s)	359, 645, 752, 777, 790
BseRI	GAGGAG	5 cut(s)	184, 251, 296, 299, 1190
BseX3I	CGGCCG	1 cut(s)	109
BseXI	GCAGC	6 cut(s)	103, 419, 583, 790, 1093, 1270
BsgI	GTGCAG	1 cut(s)	830
Bsh1285I	CGRYCG	2 cut(s)	108, 112
BshFI	GGCC	4 cut(s)	111, 278, 619, 965
BsiEI	CGRYCG	2 cut(s)	108, 112
BsiSI	CCGG	8 cut(s)	74, 99, 108, 222, 271, 478, 909, 958
BslI	CCNNNNNNNGG	1 cut(s)	1061
BsmAI	GTCTC	6 cut(s)	19, 55, 137, 706, 1188, 1321
BsmI	GAATGC	1 cut(s)	360
BsnI	GGCC	4 cut(s)	111, 278, 619, 965
Bso31I	GGTCTC	1 cut(s)	1321
Bsp143I	GATC	4 cut(s)	525, 792, 1228, 1275
BspACI	CCGC	5 cut(s)	96, 160, 225, 806, 912
BspANI	GGCC	4 cut(s)	111, 278, 619, 965
BspLI	GGNNCC	2 cut(s)	300, 1053
BspMAI	CTGCAG	1 cut(s)	1111
BspMI	ACCTGC	2 cut(s)	165, 852
BspQI	GCTCTTC	1 cut(s)	1162
BspTNI	GGTCTC	1 cut(s)	1321
BsrFI	RCCGGY	2 cut(s)	98, 107
BsrI	ACTGG	5 cut(s)	359, 645, 752, 777, 790
BssAI	RCCGGY	2 cut(s)	98, 107
BssECI	CCNNGG	4 cut(s)	139, 279, 760, 907
BssMI	GATC	4 cut(s)	525, 792, 1228, 1275
BssT1I	CCWWGG	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	762
Bst4CI	ACNGT	3 cut(s)	152, 248, 1048
Bst6I	CTCTTC	5 cut(s)	140, 828, 886, 966, 1162
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstC8I	GCNNGC	4 cut(s)	180, 867, 1307, 1311
BstDEI	CTNAG	1 cut(s)	982
BstEII	GGTNACC	2 cut(s)	152, 839
BstF5I	GGATG	4 cut(s)	475, 507, 1162, 1194
BstH2I	RGCGCY	1 cut(s)	1306
BstHHI	GCGC	1 cut(s)	1305
BstKTI	GATC	4 cut(s)	528, 795, 1231, 1278
BstMAI	GTCTC	6 cut(s)	19, 55, 137, 706, 1188, 1321
BstMBI	GATC	4 cut(s)	525, 792, 1228, 1275
BstMCI	CGRYCG	2 cut(s)	108, 112
BstMWI	GCNNNNNNNGC	4 cut(s)	355, 404, 1103, 1262
BstNI	CCWGG	1 cut(s)	762
BstNSI	RCATGY	1 cut(s)	311
BstPI	GGTNACC	2 cut(s)	152, 839
BstSCI	CCNGG	6 cut(s)	73, 220, 270, 760, 907, 957
BstSFI	CTRYAG	1 cut(s)	1107
BstV1I	GCAGC	6 cut(s)	103, 419, 583, 790, 1093, 1270
BstX2I	RGATCY	1 cut(s)	525
BstYI	RGATCY	1 cut(s)	525
BstZI	CGGCCG	1 cut(s)	109
BsuRI	GGCC	4 cut(s)	111, 278, 619, 965
BtrI	CACGTC	1 cut(s)	256
BtsCI	GGATG	4 cut(s)	475, 507, 1162, 1194
BveI	ACCTGC	2 cut(s)	165, 852
Cac8I	GCNNGC	4 cut(s)	180, 867, 1307, 1311
CfoI	GCGC	1 cut(s)	1305
Cfr10I	RCCGGY	2 cut(s)	98, 107
Csp6I	GTAC	3 cut(s)	80, 556, 780
CviAII	CATG	3 cut(s)	308, 1042, 1232
CviQI	GTAC	3 cut(s)	80, 556, 780
DdeI	CTNAG	1 cut(s)	982
DpnI	GATC	4 cut(s)	527, 794, 1230, 1277
DpnII	GATC	4 cut(s)	525, 792, 1228, 1275
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
EaeI	YGGCCR	2 cut(s)	109, 617
EagI	CGGCCG	1 cut(s)	109
Eam1104I	CTCTTC	5 cut(s)	140, 828, 886, 966, 1162
EarI	CTCTTC	5 cut(s)	140, 828, 886, 966, 1162
EclXI	CGGCCG	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	139
Eco31I	GGTCTC	1 cut(s)	1321
Eco52I	CGGCCG	1 cut(s)	109
Eco57I	CTGAAG	2 cut(s)	34, 444
Eco91I	GGTNACC	2 cut(s)	152, 839
EcoO65I	GGTNACC	2 cut(s)	152, 839
EcoRI	GAATTC	1 cut(s)	1269
EcoRII	CCWGG	1 cut(s)	760
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	3 cut(s)	311, 1045, 1235
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FatI	CATG	3 cut(s)	307, 1041, 1231
FauI	CCCGC	2 cut(s)	153, 218
FauNDI	CATATG	1 cut(s)	1250
FbaI	TGATCA	1 cut(s)	1275
FblI	GTMKAC	1 cut(s)	1296
Fnu4HI	GCNGC	6 cut(s)	117, 408, 597, 804, 1107, 1284
FokI	GGATG	4 cut(s)	482, 514, 1169, 1201
Fsp4HI	GCNGC	6 cut(s)	117, 408, 597, 804, 1107, 1284
FspBI	CTAG	2 cut(s)	579, 1037
GlaI	GCGC	1 cut(s)	1304
GluI	GCNGC	6 cut(s)	117, 408, 597, 804, 1107, 1284
GsuI	CTGGAG	2 cut(s)	41, 728
HaeII	RGCGCY	1 cut(s)	1306
HaeIII	GGCC	4 cut(s)	111, 278, 619, 965
HapII	CCGG	8 cut(s)	74, 99, 108, 222, 271, 478, 909, 958
HhaI	GCGC	1 cut(s)	1305
Hin1II	CATG	3 cut(s)	311, 1045, 1235
Hin6I	GCGC	1 cut(s)	1303
HinP1I	GCGC	1 cut(s)	1303
HincII	GTYRAC	3 cut(s)	573, 757, 1000
HindII	GTYRAC	3 cut(s)	573, 757, 1000
HindIII	AAGCTT	1 cut(s)	396
HinfI	GANTC	4 cut(s)	54, 520, 714, 741
HpaI	GTTAAC	1 cut(s)	573
HpaII	CCGG	8 cut(s)	74, 99, 108, 222, 271, 478, 909, 958
HphI	GGTGA	8 cut(s)	164, 254, 260, 762, 851, 905, 941, 1000
Hpy188I	TCNGA	5 cut(s)	53, 450, 519, 525, 1275
Hpy188III	TCNNGA	6 cut(s)	58, 329, 745, 1016, 1226, 1319
Hpy99I	CGWCG	2 cut(s)	149, 152
HpyAV	CCTTC	2 cut(s)	312, 999
HpyCH4III	ACNGT	3 cut(s)	152, 248, 1048
HpyCH4IV	ACGT	3 cut(s)	35, 255, 849
HpyCH4V	TGCA	3 cut(s)	599, 847, 1109
HpyF10VI	GCNNNNNNNGC	4 cut(s)	355, 404, 1103, 1262
HpyF3I	CTNAG	1 cut(s)	982
HpySE526I	ACGT	3 cut(s)	35, 255, 849
Hsp92II	CATG	3 cut(s)	311, 1045, 1235
HspAI	GCGC	1 cut(s)	1303
Ksp22I	TGATCA	1 cut(s)	1275
KspAI	GTTAAC	1 cut(s)	573
Kzo9I	GATC	4 cut(s)	525, 792, 1228, 1275
LguI	GCTCTTC	1 cut(s)	1162
LmnI	GCTCC	5 cut(s)	298, 415, 451, 1102, 1138
Lsp1109I	GCAGC	6 cut(s)	103, 419, 583, 790, 1093, 1270
LweI	GCATC	3 cut(s)	433, 608, 922
MaeI	CTAG	2 cut(s)	579, 1037
MaeII	ACGT	3 cut(s)	35, 255, 849
MaeIII	GTNAC	5 cut(s)	152, 242, 839, 1006, 1206
MalI	GATC	4 cut(s)	527, 794, 1230, 1277
MboI	GATC	4 cut(s)	525, 792, 1228, 1275
MboII	GAAGA	7 cut(s)	127, 556, 689, 845, 873, 983, 1179
MfeI	CAATTG	1 cut(s)	603
MflI	RGATCY	1 cut(s)	525
MluCI	AATT	5 cut(s)	603, 720, 1059, 1269, 1334
MlyI	GAGTC	3 cut(s)	48, 708, 735
MroXI	GAANNNNTTC	1 cut(s)	1146
MseI	TTAA	3 cut(s)	384, 572, 1089
MslI	CAYNNNNRTG	3 cut(s)	312, 891, 1046
MspI	CCGG	8 cut(s)	74, 99, 108, 222, 271, 478, 909, 958
MspR9I	CCNGG	6 cut(s)	75, 222, 272, 762, 909, 959
MunI	CAATTG	1 cut(s)	603
Mva1269I	GAATGC	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	762
MwoI	GCNNNNNNNGC	4 cut(s)	355, 404, 1103, 1262
NciI	CCSGG	5 cut(s)	75, 222, 272, 909, 959
NdeI	CATATG	1 cut(s)	1250
NdeII	GATC	4 cut(s)	525, 792, 1228, 1275
NlaIII	CATG	3 cut(s)	311, 1045, 1235
NlaIV	GGNNCC	2 cut(s)	300, 1053
NmeAIII	GCCGAG	2 cut(s)	137, 304
NmuCI	GTSAC	4 cut(s)	152, 242, 839, 1006
NspI	RCATGY	1 cut(s)	311
OliI	CACNNNNGTG	1 cut(s)	891
PciI	ACATGT	1 cut(s)	307
PciSI	GCTCTTC	1 cut(s)	1162
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PctI	GAATGC	1 cut(s)	360
PdmI	GAANNNNTTC	1 cut(s)	1146
PfeI	GAWTC	1 cut(s)	520
PfoI	TCCNGGA	2 cut(s)	270, 957
PkrI	GCNGC	6 cut(s)	118, 409, 598, 805, 1108, 1285
PleI	GAGTC	3 cut(s)	48, 708, 735
PpsI	GAGTC	3 cut(s)	48, 708, 735
PscI	ACATGT	1 cut(s)	307
PsiI	TTATAA	1 cut(s)	651
Psp1406I	AACGTT	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	760
PspEI	GGTNACC	2 cut(s)	152, 839
PspGI	CCWGG	1 cut(s)	760
PspN4I	GGNNCC	2 cut(s)	300, 1053
PstI	CTGCAG	1 cut(s)	1111
PsuI	RGATCY	1 cut(s)	525
RsaI	GTAC	3 cut(s)	81, 557, 781
RsaNI	GTAC	3 cut(s)	80, 556, 780
RseI	CAYNNNNRTG	3 cut(s)	312, 891, 1046
SapI	GCTCTTC	1 cut(s)	1162
SaqAI	TTAA	3 cut(s)	384, 572, 1089
SatI	GCNGC	6 cut(s)	117, 408, 597, 804, 1107, 1284
Sau3AI	GATC	4 cut(s)	525, 792, 1228, 1275
SchI	GAGTC	3 cut(s)	48, 708, 735
ScrFI	CCNGG	6 cut(s)	75, 222, 272, 762, 909, 959
SfaNI	GCATC	3 cut(s)	433, 608, 922
SfcI	CTRYAG	1 cut(s)	1107
SmiMI	CAYNNNNRTG	3 cut(s)	312, 891, 1046
SmlI	CTYRAG	1 cut(s)	1151
SmoI	CTYRAG	1 cut(s)	1151
Sse9I	AATT	5 cut(s)	603, 720, 1059, 1269, 1334
SsiI	CCGC	5 cut(s)	96, 160, 225, 806, 912
SspMI	CTAG	2 cut(s)	579, 1037
StyD4I	CCNGG	6 cut(s)	73, 220, 270, 760, 907, 957
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	3 cut(s)	152, 248, 1048
TaiI	ACGT	3 cut(s)	38, 258, 852
TaqI	TCGA	4 cut(s)	104, 312, 791, 1289
TaqII	GACCGA	1 cut(s)	1345
TasI	AATT	5 cut(s)	603, 720, 1059, 1269, 1334
TatI	WGTACW	2 cut(s)	555, 779
TfiI	GAWTC	1 cut(s)	520
Tru1I	TTAA	3 cut(s)	384, 572, 1089
Tru9I	TTAA	3 cut(s)	384, 572, 1089
TseFI	GTSAC	4 cut(s)	152, 242, 839, 1006
TseI	GCWGC	6 cut(s)	116, 407, 596, 803, 1106, 1283
Tsp45I	GTSAC	4 cut(s)	152, 242, 839, 1006
TspDTI	ATGAA	5 cut(s)	451, 552, 557, 627, 984
XapI	RAATTY	3 cut(s)	720, 1269, 1334
XceI	RCATGY	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	1296
XmnI	GAANNNNTTC	1 cut(s)	1146
XspI	CTAG	2 cut(s)	579, 1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.