Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001706

Physical Location & Seq

Genomic Coordinates Reverse (-)

87658422 .. 87660956

Gene Structure 2535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00066130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGACCCACCCACTTCCTCCCCGCGACTTCTGGCCCTGACCCACCAGCTCCGCCTCTACAAGCCACCGCCTCTGTCCTGGGACGACGACTCCGAGGAGCAGAGAATTGAAGAAACTGCCGGCAAAGTCGTGTCCCAAGTGGGCTTTGCTGAGTCCAAAACCCCAATTGCAAGAGACCCAGAAACGTTCAGGCCCAAAAGAGCTGCTGTTTTGATCTGTTTGTTTGAAGGAGACGGTGGGGATCTACGTGTCGTTTTGACCAAGAGGTCATCTGGGTTGTCTACTCACTCTGGTGAGGTTTCTTTGCCAGGTGGGAAAACAGAGGAGGGAGACAAGGATGATGGTGACACAGCAACAAGAGAAGCGAAAGAGGAGATTGGTTTGGATCCTAAGCTTGTTAACGTTGTCACTGTTCTTGAACCATTTTTGTCTAAGCACCTACTGAGAGTTGTACCTGTTATCGGTATACTTAACGATAAGGAAGCATTCAAGCCTGCTCCAAATCCGGCGGAAGTGGAATCAGTATTTGATGCTCCCTTGGAAATGTTCATCAAGGATGAAAACAGGAGGGCAGAGGAGAGAGAGTGGATGGGTAACAAATACCTGATTCATTTCTTTGACTACGAAACCAACAACAAGAAGTATATGATATGGGGCTTAACTGCTGGTATCTTGATTAGGGCTGCATCAATTGTATATGAACGGCCTCCACCTTTTGTGGAGCAGAATCCCAGTCATAAGGTTCTTAGAAGTGTAGACAAAAATACCGTGCTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006104 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0010945 GO:0015936 GO:0015937 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

259

Amino Acids

28.97

Weight (kDa)

5.31

Isoelectric Point (pI)

52.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	66 - 190	1.9e-14	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT2G33980 AT2G33980 AT2G33980 AT2G33980
fragaria_vesca	FvH4_3g08140
malus_domestica	MD05G1305000.v1.1 MD10G1284300.v1.1
prunus_persica	Prupe.4G057200_v2.0.a1
pyrus_communis	pycom05g28230 pycom10g23720
rosa_chinensis	RchiOBHm_Chr1g0373431 RchiOBHm_Chr2g0139421 RchiOBHm_Chr2g0167991 RchiOBHm_Chr2g0168001 RchiOBHm_Chr5g0010041 RchiOBHm_Chr5g0010051
rosa_laevigata	RLG00000031721 RLG00000031722
rosa_multiflora	Rmu_co8078996.1_g000001 Rmu_sc0001896.1_g000034 Rmu_sc0002275.1_g000008 Rmu_sc0016197.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066120 Rroxscaffold_1G00066130 Rroxscaffold_2G00103220
rosa_rugosa	Rorug04G0448800 Rorug04G0448900 Rorug04G0448900 Rorug04G0448900
rosa_samantha	Rh3BG108900 Rh3CG348700 Rh5AG079600 Rh5AG079700 Rh5BG074400 Rh5BG074500 Rh5CG087000 Rh5CG087100 Rh5DG075100 Rh5DG075200
rosa_wichuraiana	Rw3G023780 Rw5G007370 Rw5G007380 Rw7G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	265
AccI	GTMKAC	3 cut(s)	281, 466, 756
AccII	CGCG	1 cut(s)	25
AciI	CCGC	4 cut(s)	23, 52, 68, 509
AclI	AACGTT	2 cut(s)	185, 402
AclWI	GGATC	3 cut(s)	249, 380, 393
AfaI	GTAC	1 cut(s)	453
AfiI	CCNNNNNNNGG	1 cut(s)	461
AflIII	ACRYGT	1 cut(s)	247
AgsI	TTSAA	4 cut(s)	110, 227, 419, 490
AjnI	CCWGG	2 cut(s)	77, 307
AleI	CACNNNNGTG	1 cut(s)	291
AluBI	AGCT	3 cut(s)	49, 203, 394
AluI	AGCT	3 cut(s)	49, 203, 394
Alw26I	GTCTC	3 cut(s)	168, 225, 324
AlwI	GGATC	3 cut(s)	249, 380, 393
AoxI	GGCC	3 cut(s)	33, 191, 704
ApeKI	GCWGC	2 cut(s)	203, 683
AspS9I	GGNCC	3 cut(s)	4, 34, 192
AsuHPI	GGTGA	2 cut(s)	305, 356
AvaII	GGWCC	1 cut(s)	4
BamHI	GGATCC	1 cut(s)	385
BbvI	GCAGC	2 cut(s)	190, 670
BccI	CCATC	2 cut(s)	335, 583
BceAI	ACGGC	1 cut(s)	719
BciT130I	CCWGG	2 cut(s)	79, 309
BcoDI	GTCTC	3 cut(s)	168, 225, 324
BisI	GCNGC	2 cut(s)	204, 684
BlsI	GCNGC	2 cut(s)	205, 685
Bme1390I	CCNGG	2 cut(s)	79, 309
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	3 cut(s)	4, 34, 192
BmiI	GGNNCC	2 cut(s)	6, 387
BmrFI	CCNGG	2 cut(s)	79, 309
BmrI	ACTGGG	1 cut(s)	726
BmsI	GCATC	2 cut(s)	520, 695
BmuI	ACTGGG	1 cut(s)	726
Bpu10I	CCTNAGC	1 cut(s)	390
BsaAI	YACGTR	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	3 cut(s)	78, 93, 537
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 569, 599
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	1 cut(s)	732
BseBI	CCWGG	2 cut(s)	79, 309
BseDI	CCNNGG	3 cut(s)	78, 93, 537
BseGI	GGATG	3 cut(s)	343, 562, 594
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMII	CTCAG	2 cut(s)	141, 434
BseNI	ACTGG	1 cut(s)	732
BseRI	GAGGAG	4 cut(s)	110, 338, 386, 590
BseXI	GCAGC	2 cut(s)	190, 670
Bsh1236I	CGCG	1 cut(s)	25
BshFI	GGCC	3 cut(s)	35, 193, 706
BsiSI	CCGG	2 cut(s)	120, 506
BslFI	GGGAC	2 cut(s)	95, 118
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	3 cut(s)	168, 225, 324
BsmBI	CGTCTC	1 cut(s)	225
BsmFI	GGGAC	2 cut(s)	95, 118
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	3 cut(s)	35, 193, 706
Bso31I	GGTCTC	1 cut(s)	168
Bsp143I	GATC	3 cut(s)	213, 241, 385
BspACI	CCGC	4 cut(s)	23, 52, 68, 509
BspANI	GGCC	3 cut(s)	35, 193, 706
BspCNI	CTCAG	2 cut(s)	142, 435
BspFNI	CGCG	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	6, 387
BspPI	GGATC	3 cut(s)	249, 380, 393
BspTNI	GGTCTC	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	732
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	3 cut(s)	78, 93, 537
BssMI	GATC	3 cut(s)	213, 241, 385
BssNAI	GTATAC	1 cut(s)	467
BssT1I	CCWWGG	1 cut(s)	537
Bst1107I	GTATAC	1 cut(s)	467
Bst2UI	CCWGG	2 cut(s)	79, 309
Bst4CI	ACNGT	3 cut(s)	236, 412, 769
BstBAI	YACGTR	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	121, 495
BstDEI	CTNAG	5 cut(s)	150, 390, 432, 443, 746
BstF5I	GGATG	3 cut(s)	343, 562, 594
BstFNI	CGCG	1 cut(s)	25
BstKTI	GATC	3 cut(s)	216, 244, 388
BstMAI	GTCTC	3 cut(s)	168, 225, 324
BstMBI	GATC	3 cut(s)	213, 241, 385
BstNI	CCWGG	2 cut(s)	79, 309
BstSCI	CCNGG	2 cut(s)	77, 307
BstUI	CGCG	1 cut(s)	25
BstV1I	GCAGC	2 cut(s)	190, 670
BstX2I	RGATCY	2 cut(s)	241, 385
BstYI	RGATCY	2 cut(s)	241, 385
BstZ17I	GTATAC	1 cut(s)	467
BsuRI	GGCC	3 cut(s)	35, 193, 706
BtsCI	GGATG	3 cut(s)	343, 562, 594
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	2 cut(s)	121, 495
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	3 cut(s)	4, 34, 192
Csp6I	GTAC	1 cut(s)	452
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	5 cut(s)	150, 390, 432, 443, 746
DpnI	GATC	3 cut(s)	215, 243, 387
DpnII	GATC	3 cut(s)	213, 241, 385
DrdI	GACNNNNNNGTC	1 cut(s)	265
DseDI	GACNNNNNNGTC	1 cut(s)	265
EciI	GGCGGA	2 cut(s)	41, 524
Eco130I	CCWWGG	1 cut(s)	537
Eco31I	GGTCTC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	4
EcoRII	CCWGG	2 cut(s)	77, 307
EcoT14I	CCWWGG	1 cut(s)	537
ErhI	CCWWGG	1 cut(s)	537
Esp3I	CGTCTC	1 cut(s)	225
FaiI	YATR	8 cut(s)	467, 645, 647, 652, 697, 699, 738, 778
FaqI	GGGAC	2 cut(s)	95, 118
FauI	CCCGC	1 cut(s)	30
FblI	GTMKAC	3 cut(s)	281, 466, 756
Fnu4HI	GCNGC	2 cut(s)	204, 684
FokI	GGATG	3 cut(s)	350, 569, 601
Fsp4HI	GCNGC	2 cut(s)	204, 684
GluI	GCNGC	2 cut(s)	204, 684
HaeIII	GGCC	3 cut(s)	35, 193, 706
HapII	CCGG	2 cut(s)	120, 506
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	5 cut(s)	89, 152, 518, 607, 727
HpaI	GTTAAC	1 cut(s)	400
HpaII	CCGG	2 cut(s)	120, 506
HphI	GGTGA	2 cut(s)	305, 356
Hpy166II	GTNNAC	4 cut(s)	282, 400, 467, 757
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	2 cut(s)	416, 673
Hpy8I	GTNNAC	4 cut(s)	282, 400, 467, 757
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	3 cut(s)	236, 412, 769
HpyCH4IV	ACGT	3 cut(s)	185, 247, 402
HpyCH4V	TGCA	2 cut(s)	170, 686
HpyF3I	CTNAG	5 cut(s)	150, 390, 432, 443, 746
HpySE526I	ACGT	3 cut(s)	185, 247, 402
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
KspAI	GTTAAC	1 cut(s)	400
Kzo9I	GATC	3 cut(s)	213, 241, 385
LmnI	GCTCC	5 cut(s)	54, 97, 502, 538, 721
Lsp1109I	GCAGC	2 cut(s)	190, 670
LweI	GCATC	2 cut(s)	520, 695
MaeII	ACGT	3 cut(s)	185, 247, 402
MaeIII	GTNAC	3 cut(s)	344, 406, 593
MalI	GATC	3 cut(s)	215, 243, 387
MboI	GATC	3 cut(s)	213, 241, 385
MboII	GAAGA	1 cut(s)	122
MfeI	CAATTG	2 cut(s)	165, 690
MflI	RGATCY	2 cut(s)	241, 385
MluCI	AATT	3 cut(s)	105, 165, 690
MlyI	GAGTC	2 cut(s)	83, 161
MroNI	GCCGGC	1 cut(s)	119
MseI	TTAA	3 cut(s)	399, 471, 659
MslI	CAYNNNNRTG	1 cut(s)	291
MspI	CCGG	2 cut(s)	120, 506
MspR9I	CCNGG	2 cut(s)	79, 309
MunI	CAATTG	2 cut(s)	165, 690
Mva1269I	GAATGC	1 cut(s)	485
MvaI	CCWGG	2 cut(s)	79, 309
MvnI	CGCG	1 cut(s)	25
NaeI	GCCGGC	1 cut(s)	121
NdeII	GATC	3 cut(s)	213, 241, 385
NgoMIV	GCCGGC	1 cut(s)	119
NlaIV	GGNNCC	2 cut(s)	6, 387
NmuCI	GTSAC	2 cut(s)	344, 406
OliI	CACNNNNGTG	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PctI	GAATGC	1 cut(s)	485
PdiI	GCCGGC	1 cut(s)	121
PfeI	GAWTC	3 cut(s)	518, 607, 727
PkrI	GCNGC	2 cut(s)	205, 685
PleI	GAGTC	2 cut(s)	83, 160
PpsI	GAGTC	2 cut(s)	83, 160
Ppu21I	YACGTR	1 cut(s)	248
Psp1406I	AACGTT	2 cut(s)	185, 402
Psp6I	CCWGG	2 cut(s)	77, 307
PspGI	CCWGG	2 cut(s)	77, 307
PspN4I	GGNNCC	2 cut(s)	6, 387
PspPI	GGNCC	3 cut(s)	4, 34, 192
PsuI	RGATCY	2 cut(s)	241, 385
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	3 cut(s)	399, 471, 659
SatI	GCNGC	2 cut(s)	204, 684
Sau3AI	GATC	3 cut(s)	213, 241, 385
Sau96I	GGNCC	3 cut(s)	4, 34, 192
SchI	GAGTC	2 cut(s)	83, 161
ScrFI	CCNGG	2 cut(s)	79, 309
SfaNI	GCATC	2 cut(s)	520, 695
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	291
Sse9I	AATT	3 cut(s)	105, 165, 690
SsiI	CCGC	4 cut(s)	23, 52, 68, 509
StyD4I	CCNGG	2 cut(s)	77, 307
StyI	CCWWGG	1 cut(s)	537
TaaI	ACNGT	3 cut(s)	236, 412, 769
TaiI	ACGT	3 cut(s)	188, 250, 405
TasI	AATT	3 cut(s)	105, 165, 690
TfiI	GAWTC	3 cut(s)	518, 607, 727
Tru1I	TTAA	3 cut(s)	399, 471, 659
Tru9I	TTAA	3 cut(s)	399, 471, 659
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	2 cut(s)	344, 406
TseI	GCWGC	2 cut(s)	203, 683
Tsp45I	GTSAC	2 cut(s)	344, 406
TspDTI	ATGAA	4 cut(s)	538, 573, 599, 714
TspRI	CASTG	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	4
XmiI	GTMKAC	3 cut(s)	281, 466, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.