Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001706

Physical Location & Seq

Genomic Coordinates Reverse (-)

14349764 .. 14360058

Gene Structure 10295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G33980.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAAGTCGGGAGCATCAGCCGCGTCGCCAACGGCGAAAAGCTTCAATTTTGGATCTTCCAGACTCTTAGCCTTGGCGCAGCAGCTGCGTGTATACAAGCCGCCGCTTTCGTCATCCTTCGACGAGAGGGAAGAGCTGCTTGCGTACAAGGAAAGCACCAGGAAATCGATAACCCACGTTGGGTTTCAGGAATCTATGGCTCCGGTGAGGTTCAGACCGAAGAAAGCTGCTGTCTTGATATGTCTCTTCGAAGGAGACGATGGTGATTTGCGTGTGATTCTTACTAAGAGGTCTTCCACATTGTCTACTCACTCAGGAGAAGTTTCTTTGCCAGGTGGTAAAGCAGAAGAGCATGATAAGGATGATGGGATTACTGCAACTAGAGAGGCAGAGGAAGAGATTGGATTAGACCCTTCGCTTGTTGATGTTGTTGCTTTCCTCGAACCATTTCTATCTCAGCATCTGCTTAGAGTAATTCCTGTGGTAGGAATATTATGGGACAGAAAAGCATTCAATCCAACACCAAATCCTGCAGAAGTGGAAGCCGTGCTTGATGCACCCTTTGAAATGTTTCTGAAGGATGAGAACCGGAGATCCGAGGAGTTTGATTGGATGGGAGAAAAGCATTTGGTCCACTTCTTTGATTACAAAACAGGAGATAGTGATTATGTTATATGGGGCTTAACTGCAAGAATCTTGATTAGAGCTGCAACAGTGGTTTATCAACGACCACCTGCTTTCATTGAACAGAAACCTAACTTGAAGTACTCCAAAATGAACCAGGCTACTCGTTTATATGGATGGCTGAAGCCGCTGGCAAATTTACATGAATCTTGTGAAAATGGAAGATTACTAGGTCATGTCCCAGCATACTGCTTGCGTTATCTAGTTGGAATATCATCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006104 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0010945 GO:0015936 GO:0015937 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

302

Amino Acids

33.91

Weight (kDa)

6.47

Isoelectric Point (pI)

49.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	74 - 183	5.9e-12	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT2G33980 AT2G33980 AT2G33980 AT2G33980
fragaria_vesca	FvH4_3g08140
malus_domestica	MD05G1305000.v1.1 MD10G1284300.v1.1
prunus_persica	Prupe.4G057200_v2.0.a1
pyrus_communis	pycom05g28230 pycom10g23720
rosa_chinensis	RchiOBHm_Chr1g0373431 RchiOBHm_Chr2g0139421 RchiOBHm_Chr2g0167991 RchiOBHm_Chr2g0168001 RchiOBHm_Chr5g0010041 RchiOBHm_Chr5g0010051
rosa_laevigata	RLG00000031721 RLG00000031722
rosa_multiflora	Rmu_co8078996.1_g000001 Rmu_sc0001896.1_g000034 Rmu_sc0002275.1_g000008 Rmu_sc0016197.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066120 Rroxscaffold_1G00066130 Rroxscaffold_2G00103220
rosa_rugosa	Rorug04G0448800 Rorug04G0448900 Rorug04G0448900 Rorug04G0448900
rosa_samantha	Rh3BG108900 Rh3CG348700 Rh5AG079600 Rh5AG079700 Rh5BG074400 Rh5BG074500 Rh5CG087000 Rh5CG087100 Rh5DG075100 Rh5DG075200
rosa_wichuraiana	Rw3G023780 Rw5G007370 Rw5G007380 Rw7G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	742
Acc36I	ACCTGC	1 cut(s)	742
AccI	GTMKAC	2 cut(s)	93, 305
AccII	CGCG	1 cut(s)	23
AciI	CCGC	4 cut(s)	21, 101, 104, 812
AclWI	GGATC	2 cut(s)	61, 588
AcsI	RAATTY	1 cut(s)	820
AcuI	CTGAAG	2 cut(s)	596, 827
AfaI	GTAC	2 cut(s)	146, 767
AfiI	CCNNNNNNNGG	2 cut(s)	180, 485
AgsI	TTSAA	5 cut(s)	46, 514, 566, 746, 763
AjnI	CCWGG	3 cut(s)	158, 331, 780
AloI	GAACNNNNNNTCC	2 cut(s)	578, 610
AluBI	AGCT	5 cut(s)	42, 85, 136, 227, 707
AluI	AGCT	5 cut(s)	42, 85, 136, 227, 707
Alw26I	GTCTC	2 cut(s)	248, 249
AlwI	GGATC	2 cut(s)	61, 588
AlwNI	CAGNNNCTG	2 cut(s)	85, 463
ApeKI	GCWGC	6 cut(s)	79, 82, 85, 136, 227, 707
ApoI	RAATTY	1 cut(s)	820
Asp700I	GAANNNNTTC	3 cut(s)	41, 447, 570
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	631
AsuHPI	GGTGA	2 cut(s)	217, 275
AsuII	TTCGAA	1 cut(s)	249
AvaII	GGWCC	1 cut(s)	631
BbsI	GAAGAC	1 cut(s)	285
BbvI	GCAGC	6 cut(s)	72, 91, 94, 123, 214, 694
BccI	CCATC	4 cut(s)	254, 359, 607, 795
BceAI	ACGGC	2 cut(s)	48, 530
BciT130I	CCWGG	3 cut(s)	160, 333, 782
BcoDI	GTCTC	2 cut(s)	248, 249
BfaI	CTAG	3 cut(s)	381, 854, 887
BfmI	CTRYAG	1 cut(s)	531
BfuAI	ACCTGC	1 cut(s)	742
BmcAI	AGTACT	1 cut(s)	767
Bme1390I	CCNGG	3 cut(s)	160, 333, 782
Bme18I	GGWCC	1 cut(s)	631
BmgT120I	GGNCC	1 cut(s)	631
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	3 cut(s)	160, 333, 782
BmsI	GCATC	3 cut(s)	23, 469, 544
BpiI	GAAGAC	1 cut(s)	285
Bpu14I	TTCGAA	1 cut(s)	249
Bsa29I	ATCGAT	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	72, 597
BsaWI	WCCGGW	2 cut(s)	202, 588
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 485
BseBI	CCWGG	3 cut(s)	160, 333, 782
BseCI	ATCGAT	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	72, 597
BseGI	GGATG	5 cut(s)	113, 367, 586, 618, 806
BseLI	CCNNNNNNNGG	2 cut(s)	180, 485
BseMII	CTCAG	2 cut(s)	327, 470
BseRI	GAGGAG	1 cut(s)	614
BseXI	GCAGC	6 cut(s)	72, 91, 94, 123, 214, 694
BseYI	CCCAGC	1 cut(s)	865
Bsh1236I	CGCG	1 cut(s)	23
BshVI	ATCGAT	1 cut(s)	167
BsiSI	CCGG	2 cut(s)	203, 589
BslFI	GGGAC	2 cut(s)	512, 848
BslI	CCNNNNNNNGG	2 cut(s)	180, 485
BsmAI	GTCTC	2 cut(s)	248, 249
BsmBI	CGTCTC	1 cut(s)	249
BsmFI	GGGAC	2 cut(s)	512, 848
BsmI	GAATGC	1 cut(s)	509
Bsp119I	TTCGAA	1 cut(s)	249
Bsp143I	GATC	2 cut(s)	53, 593
BspACI	CCGC	4 cut(s)	21, 101, 104, 812
BspCNI	CTCAG	2 cut(s)	326, 469
BspDI	ATCGAT	1 cut(s)	167
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	201
BspMAI	CTGCAG	1 cut(s)	535
BspMI	ACCTGC	1 cut(s)	742
BspPI	GGATC	2 cut(s)	61, 588
BspQI	GCTCTTC	2 cut(s)	126, 342
BspT104I	TTCGAA	1 cut(s)	249
BssECI	CCNNGG	2 cut(s)	72, 597
BssMI	GATC	2 cut(s)	53, 593
BssNAI	GTATAC	1 cut(s)	94
BssT1I	CCWWGG	1 cut(s)	72
Bst1107I	GTATAC	1 cut(s)	94
Bst2UI	CCWGG	3 cut(s)	160, 333, 782
Bst4CI	ACNGT	1 cut(s)	715
Bst6I	CTCTTC	4 cut(s)	126, 251, 342, 390
BstAPI	GCANNNNNTGC	1 cut(s)	85
BstBI	TTCGAA	1 cut(s)	249
BstC8I	GCNNGC	3 cut(s)	141, 816, 878
BstDEI	CTNAG	5 cut(s)	67, 285, 313, 456, 467
BstENI	CCTNNNNNAGG	1 cut(s)	483
BstF5I	GGATG	5 cut(s)	113, 367, 586, 618, 806
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	2 cut(s)	56, 596
BstMAI	GTCTC	2 cut(s)	248, 249
BstMBI	GATC	2 cut(s)	53, 593
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 85, 811
BstNI	CCWGG	3 cut(s)	160, 333, 782
BstSCI	CCNGG	3 cut(s)	158, 331, 780
BstSFI	CTRYAG	1 cut(s)	531
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	6 cut(s)	72, 91, 94, 123, 214, 694
BstV2I	GAAGAC	1 cut(s)	285
BstX2I	RGATCY	2 cut(s)	53, 593
BstYI	RGATCY	2 cut(s)	53, 593
BstZ17I	GTATAC	1 cut(s)	94
Bsu15I	ATCGAT	1 cut(s)	167
BsuTUI	ATCGAT	1 cut(s)	167
BtsCI	GGATG	5 cut(s)	113, 367, 586, 618, 806
BtsIMutI	CAGTG	1 cut(s)	720
BveI	ACCTGC	1 cut(s)	742
Cac8I	GCNNGC	3 cut(s)	141, 816, 878
CaiI	CAGNNNCTG	2 cut(s)	85, 463
CfoI	GCGC	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	631
ClaI	ATCGAT	1 cut(s)	167
CseI	GACGC	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	145, 766
CviAII	CATG	3 cut(s)	353, 827, 860
CviQI	GTAC	2 cut(s)	145, 766
DdeI	CTNAG	5 cut(s)	67, 285, 313, 456, 467
DpnI	GATC	2 cut(s)	55, 595
DpnII	GATC	2 cut(s)	53, 593
Eam1104I	CTCTTC	4 cut(s)	126, 251, 342, 390
EarI	CTCTTC	4 cut(s)	126, 251, 342, 390
Eco130I	CCWWGG	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	631
Eco57I	CTGAAG	2 cut(s)	596, 827
EcoNI	CCTNNNNNAGG	1 cut(s)	483
EcoRII	CCWGG	3 cut(s)	158, 331, 780
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
Esp3I	CGTCTC	1 cut(s)	249
FaeI	CATG	3 cut(s)	356, 830, 863
FalI	AAGNNNNNCTT	4 cut(s)	123, 155, 534, 566
FaqI	GGGAC	2 cut(s)	512, 848
FatI	CATG	3 cut(s)	352, 826, 859
FblI	GTMKAC	2 cut(s)	93, 305
FokI	GGATG	5 cut(s)	100, 374, 593, 625, 813
FspBI	CTAG	3 cut(s)	381, 854, 887
GlaI	GCGC	1 cut(s)	78
GsaI	CCCAGC	1 cut(s)	869
HapII	CCGG	2 cut(s)	203, 589
HgaI	GACGC	1 cut(s)	12
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	3 cut(s)	356, 830, 863
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	5 cut(s)	63, 191, 277, 693, 830
HpaII	CCGG	2 cut(s)	203, 589
HphI	GGTGA	2 cut(s)	217, 275
Hpy166II	GTNNAC	3 cut(s)	94, 306, 634
Hpy188I	TCNGA	3 cut(s)	215, 576, 598
Hpy188III	TCNNGA	7 cut(s)	9, 60, 188, 235, 315, 697, 903
Hpy8I	GTNNAC	3 cut(s)	94, 306, 634
Hpy99I	CGWCG	2 cut(s)	28, 125
HpyAV	CCTTC	4 cut(s)	127, 245, 423, 571
HpyCH4III	ACNGT	1 cut(s)	715
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	5 cut(s)	377, 533, 557, 689, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 85, 811
HpyF3I	CTNAG	5 cut(s)	67, 285, 313, 456, 467
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	3 cut(s)	356, 830, 863
HspAI	GCGC	1 cut(s)	77
Kzo9I	GATC	2 cut(s)	53, 593
LguI	GCTCTTC	2 cut(s)	126, 342
LmnI	GCTCC	2 cut(s)	11, 205
Lsp1109I	GCAGC	6 cut(s)	72, 91, 94, 123, 214, 694
LweI	GCATC	3 cut(s)	23, 469, 544
MaeI	CTAG	3 cut(s)	381, 854, 887
MaeII	ACGT	1 cut(s)	177
MalI	GATC	2 cut(s)	55, 595
MboI	GATC	2 cut(s)	53, 593
MboII	GAAGA	8 cut(s)	48, 143, 232, 238, 285, 359, 407, 858
MflI	RGATCY	2 cut(s)	53, 593
MluCI	AATT	3 cut(s)	46, 474, 820
MlyI	GAGTC	1 cut(s)	57
MmeI	TCCRAC	2 cut(s)	542, 871
MnlI	CCTC	7 cut(s)	120, 201, 282, 379, 385, 449, 592
MroXI	GAANNNNTTC	3 cut(s)	41, 447, 570
MseI	TTAA	1 cut(s)	683
MslI	CAYNNNNRTG	1 cut(s)	904
MspA1I	CMGCKG	2 cut(s)	85, 814
MspI	CCGG	2 cut(s)	203, 589
MspR9I	CCNGG	3 cut(s)	160, 333, 782
Mva1269I	GAATGC	1 cut(s)	509
MvaI	CCWGG	3 cut(s)	160, 333, 782
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	3 cut(s)	20, 85, 811
NdeII	GATC	2 cut(s)	53, 593
NlaIII	CATG	3 cut(s)	356, 830, 863
NlaIV	GGNNCC	1 cut(s)	201
NspV	TTCGAA	1 cut(s)	249
PaqCI	CACCTGC	1 cut(s)	742
PciSI	GCTCTTC	2 cut(s)	126, 342
PcsI	WCGNNNNNNNCGW	2 cut(s)	32, 255
PctI	GAATGC	1 cut(s)	509
PdmI	GAANNNNTTC	3 cut(s)	41, 447, 570
PfeI	GAWTC	4 cut(s)	191, 277, 693, 830
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
Psp6I	CCWGG	3 cut(s)	158, 331, 780
PspFI	CCCAGC	1 cut(s)	865
PspGI	CCWGG	3 cut(s)	158, 331, 780
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	631
PstI	CTGCAG	1 cut(s)	535
PstNI	CAGNNNCTG	2 cut(s)	85, 463
PsuI	RGATCY	2 cut(s)	53, 593
PvuII	CAGCTG	1 cut(s)	85
RsaI	GTAC	2 cut(s)	146, 767
RsaNI	GTAC	2 cut(s)	145, 766
RseI	CAYNNNNRTG	1 cut(s)	904
SapI	GCTCTTC	2 cut(s)	126, 342
SaqAI	TTAA	1 cut(s)	683
Sau3AI	GATC	2 cut(s)	53, 593
Sau96I	GGNCC	1 cut(s)	631
ScaI	AGTACT	1 cut(s)	767
SchI	GAGTC	1 cut(s)	57
ScrFI	CCNGG	3 cut(s)	160, 333, 782
SfaNI	GCATC	3 cut(s)	23, 469, 544
SfcI	CTRYAG	1 cut(s)	531
SfuI	TTCGAA	1 cut(s)	249
SinI	GGWCC	1 cut(s)	631
SmiMI	CAYNNNNRTG	1 cut(s)	904
Sse9I	AATT	3 cut(s)	46, 474, 820
SsiI	CCGC	4 cut(s)	21, 101, 104, 812
SspI	AATATT	1 cut(s)	492
SspMI	CTAG	3 cut(s)	381, 854, 887
StyD4I	CCNGG	3 cut(s)	158, 331, 780
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	715
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	4 cut(s)	120, 167, 249, 441
TaqII	GACCGA	1 cut(s)	232
TasI	AATT	3 cut(s)	46, 474, 820
TatI	WGTACW	1 cut(s)	765
TauI	GCSGC	4 cut(s)	23, 103, 106, 814
TfiI	GAWTC	4 cut(s)	191, 277, 693, 830
Tru1I	TTAA	1 cut(s)	683
Tru9I	TTAA	1 cut(s)	683
TscAI	CASTG	1 cut(s)	720
TseI	GCWGC	6 cut(s)	79, 82, 85, 136, 227, 707
TspDTI	ATGAA	4 cut(s)	17, 730, 791, 843
TspRI	CASTG	1 cut(s)	720
VpaK11BI	GGWCC	1 cut(s)	631
XagI	CCTNNNNNAGG	1 cut(s)	483
XapI	RAATTY	1 cut(s)	820
XmiI	GTMKAC	2 cut(s)	93, 305
XmnI	GAANNNNTTC	3 cut(s)	41, 447, 570
XspI	CTAG	3 cut(s)	381, 854, 887
ZrmI	AGTACT	1 cut(s)	767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.