Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001706

Physical Location & Seq

Genomic Coordinates Forward (+)

6809406 .. 6814043

Gene Structure 4638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG079600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGATCTCGATCCTCAGAAGACTAACAACCTCACTCCAACCTCTAATGGACCCACCCATTTCCTCCCCGCGACTTCTGGCCCTGACCCACCAGCTCCGCCTCTACAAGCCACCCCCTCTGTCCTGGGACGACGACTCCGAGGAGCAGAGAATCGAAGAAACTGTCGGCAAAGTGGTGTCCCAAGTGGGCTTTGCTGAGTCCAAAACCCCAATTGCAAGAGACCCAGAAACGTTCAGGCCCAAAAGAGCTGCTGTTCTGATCTGTTTGTTTGAAGGAGACGGTGGGGATCTACGTGTCGTTTTGACCAAGAGGTCATCTGGGTTGTCCACTCACTCTGGTGAGGTTTCTTTGCCAGGTGGGAAAACAGAGGAGGGAGACAAGGATGATGGTGACACGGCAACAAGAGAAGCGAAAGAGGAGATTGGTTTGGATCCTAAGCTTGTTAATGTTGTCACTGTTCTTGAACCATTTTTGTCAAAGCACCTACTGAGAGTTGTACCTGTTATCGGTATACTTAACGATAAGGAAGCATTCAAGCCTGCTCCAAATCCGACCGAAGTGGAATCAGTATTTGATGCTCCCTTGGAAATGTTCATCAAGGATGAAAACAGGAGGGTAGAGGAGAGAGAGTGGATGGGTAACAAATACCTGATTCATTTCTTTGACTACGAAACCAACAACAAGAAGTACATGATATGGGGCTTAACTGCTGGTATCTTGATTAGGGCTGCATCAATTGTATATGAACGGCCTCCACCTTTTGTCGAGCAGAATCCTAGTCATAAGGTCCATTTCACCTCATCATCATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006104 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0010945 GO:0015936 GO:0015937 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

270

Amino Acids

30.38

Weight (kDa)

5.51

Isoelectric Point (pI)

55.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	81 - 191	3.1e-14	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT2G33980 AT2G33980 AT2G33980 AT2G33980
fragaria_vesca	FvH4_3g08140
malus_domestica	MD05G1305000.v1.1 MD10G1284300.v1.1
prunus_persica	Prupe.4G057200_v2.0.a1
pyrus_communis	pycom05g28230 pycom10g23720
rosa_chinensis	RchiOBHm_Chr1g0373431 RchiOBHm_Chr2g0139421 RchiOBHm_Chr2g0167991 RchiOBHm_Chr2g0168001 RchiOBHm_Chr5g0010041 RchiOBHm_Chr5g0010051
rosa_laevigata	RLG00000031721 RLG00000031722
rosa_multiflora	Rmu_co8078996.1_g000001 Rmu_sc0001896.1_g000034 Rmu_sc0002275.1_g000008 Rmu_sc0016197.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066120 Rroxscaffold_1G00066130 Rroxscaffold_2G00103220
rosa_rugosa	Rorug04G0448800 Rorug04G0448900 Rorug04G0448900 Rorug04G0448900
rosa_samantha	Rh3BG108900 Rh3CG348700 Rh5AG079600 Rh5AG079700 Rh5BG074400 Rh5BG074500 Rh5CG087000 Rh5CG087100 Rh5DG075100 Rh5DG075200
rosa_wichuraiana	Rw3G023780 Rw5G007370 Rw5G007380 Rw7G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	310
AccI	GTMKAC	1 cut(s)	511
AccII	CGCG	1 cut(s)	70
AciI	CCGC	2 cut(s)	68, 97
AclI	AACGTT	1 cut(s)	230
AclWI	GGATC	4 cut(s)	4, 294, 425, 438
AfaI	GTAC	2 cut(s)	498, 689
AfiI	CCNNNNNNNGG	1 cut(s)	506
AflIII	ACRYGT	1 cut(s)	292
AgsI	TTSAA	3 cut(s)	272, 464, 535
AjnI	CCWGG	2 cut(s)	122, 352
AleI	CACNNNNGTG	1 cut(s)	336
AluBI	AGCT	3 cut(s)	94, 248, 439
AluI	AGCT	3 cut(s)	94, 248, 439
Alw26I	GTCTC	3 cut(s)	213, 270, 369
AlwI	GGATC	4 cut(s)	4, 294, 425, 438
AoxI	GGCC	3 cut(s)	78, 236, 749
ApeKI	GCWGC	2 cut(s)	248, 728
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AspS9I	GGNCC	4 cut(s)	49, 79, 237, 787
AsuHPI	GGTGA	3 cut(s)	350, 401, 787
AvaII	GGWCC	2 cut(s)	49, 787
BamHI	GGATCC	1 cut(s)	430
BbsI	GAAGAC	1 cut(s)	25
BbvI	GCAGC	2 cut(s)	235, 715
BccI	CCATC	2 cut(s)	380, 628
BceAI	ACGGC	2 cut(s)	411, 764
BciT130I	CCWGG	2 cut(s)	124, 354
BcoDI	GTCTC	3 cut(s)	213, 270, 369
BfaI	CTAG	1 cut(s)	777
BisI	GCNGC	2 cut(s)	249, 729
BlsI	GCNGC	2 cut(s)	250, 730
Bme1390I	CCNGG	2 cut(s)	124, 354
Bme18I	GGWCC	2 cut(s)	49, 787
BmgT120I	GGNCC	4 cut(s)	49, 79, 237, 787
BmiI	GGNNCC	2 cut(s)	51, 432
BmrFI	CCNGG	2 cut(s)	124, 354
BmsI	GCATC	2 cut(s)	565, 740
BpiI	GAAGAC	1 cut(s)	25
Bpu10I	CCTNAGC	1 cut(s)	435
BsaAI	YACGTR	1 cut(s)	293
BsaBI	GATNNNNATC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	213
BsaJI	CCNNGG	3 cut(s)	123, 138, 582
BsaXI	ACNNNNNCTCC	4 cut(s)	119, 149, 614, 644
Bsc4I	CCNNNNNNNGG	1 cut(s)	506
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	2 cut(s)	124, 354
BseDI	CCNNGG	3 cut(s)	123, 138, 582
BseGI	GGATG	3 cut(s)	388, 607, 639
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	506
BseMII	CTCAG	3 cut(s)	28, 186, 479
BseRI	GAGGAG	4 cut(s)	155, 383, 431, 635
BseXI	GCAGC	2 cut(s)	235, 715
Bsh1236I	CGCG	1 cut(s)	70
Bsh1285I	CGRYCG	1 cut(s)	555
BshFI	GGCC	3 cut(s)	80, 238, 751
BsiEI	CGRYCG	1 cut(s)	555
BslFI	GGGAC	2 cut(s)	140, 163
BslI	CCNNNNNNNGG	1 cut(s)	506
BsmAI	GTCTC	3 cut(s)	213, 270, 369
BsmBI	CGTCTC	1 cut(s)	270
BsmFI	GGGAC	2 cut(s)	140, 163
BsmI	GAATGC	1 cut(s)	530
BsnI	GGCC	3 cut(s)	80, 238, 751
Bso31I	GGTCTC	1 cut(s)	213
Bsp143I	GATC	5 cut(s)	3, 9, 258, 286, 430
BspACI	CCGC	2 cut(s)	68, 97
BspANI	GGCC	3 cut(s)	80, 238, 751
BspCNI	CTCAG	3 cut(s)	27, 187, 480
BspFNI	CGCG	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	51, 432
BspPI	GGATC	4 cut(s)	4, 294, 425, 438
BspTNI	GGTCTC	1 cut(s)	213
BssECI	CCNNGG	3 cut(s)	123, 138, 582
BssMI	GATC	5 cut(s)	3, 9, 258, 286, 430
BssNAI	GTATAC	1 cut(s)	512
BssT1I	CCWWGG	1 cut(s)	582
Bst1107I	GTATAC	1 cut(s)	512
Bst2UI	CCWGG	2 cut(s)	124, 354
Bst4CI	ACNGT	3 cut(s)	163, 281, 457
BstBAI	YACGTR	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	540
BstDEI	CTNAG	4 cut(s)	14, 195, 435, 488
BstF5I	GGATG	3 cut(s)	388, 607, 639
BstFNI	CGCG	1 cut(s)	70
BstKTI	GATC	5 cut(s)	6, 12, 261, 289, 433
BstMAI	GTCTC	3 cut(s)	213, 270, 369
BstMBI	GATC	5 cut(s)	3, 9, 258, 286, 430
BstMCI	CGRYCG	1 cut(s)	555
BstNI	CCWGG	2 cut(s)	124, 354
BstSCI	CCNGG	2 cut(s)	122, 352
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	235, 715
BstV2I	GAAGAC	1 cut(s)	25
BstX2I	RGATCY	2 cut(s)	286, 430
BstYI	RGATCY	2 cut(s)	286, 430
BstZ17I	GTATAC	1 cut(s)	512
BsuRI	GGCC	3 cut(s)	80, 238, 751
BtsCI	GGATG	3 cut(s)	388, 607, 639
BtsIMutI	CAGTG	1 cut(s)	453
Cac8I	GCNNGC	1 cut(s)	540
Cfr13I	GGNCC	4 cut(s)	49, 79, 237, 787
Csp6I	GTAC	2 cut(s)	497, 688
CviAII	CATG	1 cut(s)	691
CviQI	GTAC	2 cut(s)	497, 688
DdeI	CTNAG	4 cut(s)	14, 195, 435, 488
DpnI	GATC	5 cut(s)	5, 11, 260, 288, 432
DpnII	GATC	5 cut(s)	3, 9, 258, 286, 430
DrdI	GACNNNNNNGTC	1 cut(s)	310
DseDI	GACNNNNNNGTC	1 cut(s)	310
EciI	GGCGGA	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	582
Eco31I	GGTCTC	1 cut(s)	213
Eco47I	GGWCC	2 cut(s)	49, 787
EcoRII	CCWGG	2 cut(s)	122, 352
EcoT14I	CCWWGG	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	582
Esp3I	CGTCTC	1 cut(s)	270
FaeI	CATG	1 cut(s)	694
FaiI	YATR	7 cut(s)	512, 692, 697, 742, 744, 783, 808
FaqI	GGGAC	2 cut(s)	140, 163
FatI	CATG	1 cut(s)	690
FauI	CCCGC	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	511
Fnu4HI	GCNGC	2 cut(s)	249, 729
FokI	GGATG	3 cut(s)	395, 614, 646
Fsp4HI	GCNGC	2 cut(s)	249, 729
FspBI	CTAG	1 cut(s)	777
GluI	GCNGC	2 cut(s)	249, 729
HaeIII	GGCC	3 cut(s)	80, 238, 751
Hin1II	CATG	1 cut(s)	694
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	6 cut(s)	134, 150, 197, 563, 652, 772
HphI	GGTGA	3 cut(s)	350, 401, 787
Hpy166II	GTNNAC	2 cut(s)	327, 512
Hpy188I	TCNGA	4 cut(s)	17, 139, 258, 552
Hpy188III	TCNNGA	3 cut(s)	7, 461, 718
Hpy8I	GTNNAC	2 cut(s)	327, 512
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	3 cut(s)	163, 281, 457
HpyCH4IV	ACGT	2 cut(s)	230, 292
HpyCH4V	TGCA	2 cut(s)	215, 731
HpyF3I	CTNAG	4 cut(s)	14, 195, 435, 488
HpySE526I	ACGT	2 cut(s)	230, 292
Hsp92II	CATG	1 cut(s)	694
Kzo9I	GATC	5 cut(s)	3, 9, 258, 286, 430
LmnI	GCTCC	4 cut(s)	99, 142, 547, 583
Lsp1109I	GCAGC	2 cut(s)	235, 715
LweI	GCATC	2 cut(s)	565, 740
MaeI	CTAG	1 cut(s)	777
MaeII	ACGT	2 cut(s)	230, 292
MaeIII	GTNAC	3 cut(s)	389, 451, 638
MalI	GATC	5 cut(s)	5, 11, 260, 288, 432
MboI	GATC	5 cut(s)	3, 9, 258, 286, 430
MboII	GAAGA	2 cut(s)	30, 167
MfeI	CAATTG	2 cut(s)	210, 735
MflI	RGATCY	2 cut(s)	286, 430
MluCI	AATT	2 cut(s)	210, 735
MlyI	GAGTC	2 cut(s)	128, 206
MmeI	TCCRAC	2 cut(s)	61, 575
MseI	TTAA	3 cut(s)	444, 516, 704
MslI	CAYNNNNRTG	1 cut(s)	336
MspR9I	CCNGG	2 cut(s)	124, 354
MunI	CAATTG	2 cut(s)	210, 735
Mva1269I	GAATGC	1 cut(s)	530
MvaI	CCWGG	2 cut(s)	124, 354
MvnI	CGCG	1 cut(s)	70
NdeII	GATC	5 cut(s)	3, 9, 258, 286, 430
NlaIII	CATG	1 cut(s)	694
NlaIV	GGNNCC	2 cut(s)	51, 432
NmuCI	GTSAC	2 cut(s)	389, 451
OliI	CACNNNNGTG	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PctI	GAATGC	1 cut(s)	530
PfeI	GAWTC	4 cut(s)	150, 563, 652, 772
PkrI	GCNGC	2 cut(s)	250, 730
PleI	GAGTC	2 cut(s)	128, 205
PpsI	GAGTC	2 cut(s)	128, 205
Ppu21I	YACGTR	1 cut(s)	293
Psp1406I	AACGTT	1 cut(s)	230
Psp6I	CCWGG	2 cut(s)	122, 352
PspGI	CCWGG	2 cut(s)	122, 352
PspN4I	GGNNCC	2 cut(s)	51, 432
PspPI	GGNCC	4 cut(s)	49, 79, 237, 787
PsuI	RGATCY	2 cut(s)	286, 430
RsaI	GTAC	2 cut(s)	498, 689
RsaNI	GTAC	2 cut(s)	497, 688
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	3 cut(s)	444, 516, 704
SatI	GCNGC	2 cut(s)	249, 729
Sau3AI	GATC	5 cut(s)	3, 9, 258, 286, 430
Sau96I	GGNCC	4 cut(s)	49, 79, 237, 787
SchI	GAGTC	2 cut(s)	128, 206
ScrFI	CCNGG	2 cut(s)	124, 354
SfaNI	GCATC	2 cut(s)	565, 740
SinI	GGWCC	2 cut(s)	49, 787
SmiMI	CAYNNNNRTG	1 cut(s)	336
Sse9I	AATT	2 cut(s)	210, 735
SsiI	CCGC	2 cut(s)	68, 97
SspMI	CTAG	1 cut(s)	777
StyD4I	CCNGG	2 cut(s)	122, 352
StyI	CCWWGG	1 cut(s)	582
TaaI	ACNGT	3 cut(s)	163, 281, 457
TaiI	ACGT	2 cut(s)	233, 295
TaqI	TCGA	3 cut(s)	8, 153, 765
TaqII	GACCGA	1 cut(s)	569
TasI	AATT	2 cut(s)	210, 735
TatI	WGTACW	1 cut(s)	687
TfiI	GAWTC	4 cut(s)	150, 563, 652, 772
Tru1I	TTAA	3 cut(s)	444, 516, 704
Tru9I	TTAA	3 cut(s)	444, 516, 704
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	2 cut(s)	389, 451
TseI	GCWGC	2 cut(s)	248, 728
Tsp45I	GTSAC	2 cut(s)	389, 451
TspDTI	ATGAA	4 cut(s)	583, 618, 644, 759
TspRI	CASTG	1 cut(s)	460
VpaK11BI	GGWCC	2 cut(s)	49, 787
XmiI	GTMKAC	1 cut(s)	511
XspI	CTAG	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.