Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8078996.1

Orthogroup ID

OG0001706

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 550

Gene Structure 550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8078996.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

gatgagaaccggagagtagagatgagagagtggatggggaacaagtatctgattcagatctttgactatgaaatgaagaataagaagtacaaaatatgggggttaactgctagtatattgataagggctgcatcaattgtatatgaacggccaccaccttttgtagagcaaaatcccagttataaggttgcttttggtgtagaaagtgaagataatcaaatgggttcaagcaaccttgaacagagactccaaattttagcacaagattttagactccagaaaccagtcaaccctggtctatcacctaccagtacaactggctcgatcaaaagagctgcggttctggtgtgtctattacaagaggaagagggtgacctgcacgttattctcacaaagcgagcctcaactctctcttctcactctggttgcctgcttgtttcacctcttagcgtcaattgcatcaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

155

Amino Acids

17.51

Weight (kDa)

8.47

Isoelectric Point (pI)

54.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT2G33980 AT2G33980 AT2G33980 AT2G33980
fragaria_vesca	FvH4_3g08140
malus_domestica	MD05G1305000.v1.1 MD10G1284300.v1.1
prunus_persica	Prupe.4G057200_v2.0.a1
pyrus_communis	pycom05g28230 pycom10g23720
rosa_chinensis	RchiOBHm_Chr1g0373431 RchiOBHm_Chr2g0139421 RchiOBHm_Chr2g0167991 RchiOBHm_Chr2g0168001 RchiOBHm_Chr5g0010041 RchiOBHm_Chr5g0010051
rosa_laevigata	RLG00000031721 RLG00000031722
rosa_multiflora	Rmu_co8078996.1_g000001 Rmu_sc0001896.1_g000034 Rmu_sc0002275.1_g000008 Rmu_sc0016197.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066120 Rroxscaffold_1G00066130 Rroxscaffold_2G00103220
rosa_rugosa	Rorug04G0448800 Rorug04G0448900 Rorug04G0448900 Rorug04G0448900
rosa_samantha	Rh3BG108900 Rh3CG348700 Rh5AG079600 Rh5AG079700 Rh5BG074400 Rh5BG074500 Rh5CG087000 Rh5CG087100 Rh5DG075100 Rh5DG075200
rosa_wichuraiana	Rw3G023780 Rw5G007370 Rw5G007380 Rw7G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	183
Acc36I	ACCTGC	1 cut(s)	384
AciI	CCGC	1 cut(s)	338
AcoI	YGGCCR	1 cut(s)	149
AcsI	RAATTY	1 cut(s)	252
AfaI	GTAC	2 cut(s)	89, 313
AgsI	TTSAA	2 cut(s)	228, 239
AjnI	CCWGG	1 cut(s)	292
AloI	GAACNNNNNNTCC	2 cut(s)	231, 263
AluBI	AGCT	1 cut(s)	335
AluI	AGCT	1 cut(s)	335
Alw26I	GTCTC	1 cut(s)	238
AoxI	GGCC	1 cut(s)	149
ApeKI	GCWGC	2 cut(s)	128, 335
ApoI	RAATTY	1 cut(s)	252
AsuHPI	GGTGA	3 cut(s)	294, 383, 432
BbvI	GCAGC	2 cut(s)	115, 322
BccI	CCATC	1 cut(s)	28
BceAI	ACGGC	1 cut(s)	164
BciT130I	CCWGG	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	384
BglII	AGATCT	1 cut(s)	57
BisI	GCNGC	2 cut(s)	129, 336
BlsI	GCNGC	2 cut(s)	130, 337
Bme1390I	CCNGG	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	294
BmrI	ACTGGG	1 cut(s)	171
BmsI	GCATC	1 cut(s)	140
BmuI	ACTGGG	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	260
BsaBI	GATNNNNATC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	292
BsaWI	WCCGGW	1 cut(s)	9
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bse1I	ACTGG	4 cut(s)	177, 284, 309, 322
Bse8I	GATNNNNATC	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	292
BseGI	GGATG	1 cut(s)	39
BseJI	GATNNNNATC	1 cut(s)	56
BseNI	ACTGG	4 cut(s)	177, 284, 309, 322
BseXI	GCAGC	2 cut(s)	115, 322
BsgI	GTGCAG	1 cut(s)	362
BshFI	GGCC	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	10
BsmAI	GTCTC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	57, 324
BspACI	CCGC	1 cut(s)	338
BspANI	GGCC	1 cut(s)	151
BspMI	ACCTGC	1 cut(s)	384
BsrI	ACTGG	4 cut(s)	177, 284, 309, 322
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	2 cut(s)	57, 324
Bst2UI	CCWGG	1 cut(s)	294
Bst6I	CTCTTC	2 cut(s)	360, 418
BstC8I	GCNNGC	2 cut(s)	399, 431
BstDEI	CTNAG	1 cut(s)	446
BstEII	GGTNACC	1 cut(s)	371
BstF5I	GGATG	1 cut(s)	39
BstKTI	GATC	2 cut(s)	60, 327
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	2 cut(s)	57, 324
BstMWI	GCNNNNNNNGC	1 cut(s)	456
BstNI	CCWGG	1 cut(s)	294
BstPI	GGTNACC	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	292
BstV1I	GCAGC	2 cut(s)	115, 322
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	39
BveI	ACCTGC	1 cut(s)	384
Cac8I	GCNNGC	2 cut(s)	399, 431
CseI	GACGC	1 cut(s)	439
Csp6I	GTAC	2 cut(s)	88, 312
CviJI	RGCY	5 cut(s)	128, 151, 321, 335, 401
CviKI_1	RGCY	5 cut(s)	128, 151, 321, 335, 401
CviQI	GTAC	2 cut(s)	88, 312
DdeI	CTNAG	1 cut(s)	446
DpnI	GATC	2 cut(s)	59, 326
DpnII	GATC	2 cut(s)	57, 324
EaeI	YGGCCR	1 cut(s)	149
Eam1104I	CTCTTC	2 cut(s)	360, 418
EarI	CTCTTC	2 cut(s)	360, 418
Eco91I	GGTNACC	1 cut(s)	371
EcoO65I	GGTNACC	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	292
FaiI	YATR	6 cut(s)	69, 97, 116, 142, 144, 183
Fnu4HI	GCNGC	2 cut(s)	129, 336
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	2 cut(s)	129, 336
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	2 cut(s)	129, 336
GsuI	CTGGAG	1 cut(s)	260
HaeIII	GGCC	1 cut(s)	151
HapII	CCGG	1 cut(s)	10
HgaI	GACGC	1 cut(s)	439
HincII	GTYRAC	2 cut(s)	105, 289
HindII	GTYRAC	2 cut(s)	105, 289
HinfI	GANTC	3 cut(s)	52, 246, 273
HpaI	GTTAAC	1 cut(s)	105
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	3 cut(s)	294, 383, 432
Hpy166II	GTNNAC	2 cut(s)	105, 289
Hpy188I	TCNGA	2 cut(s)	51, 57
Hpy188III	TCNNGA	1 cut(s)	277
Hpy8I	GTNNAC	2 cut(s)	105, 289
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	3 cut(s)	131, 379, 459
HpyF10VI	GCNNNNNNNGC	1 cut(s)	456
HpyF3I	CTNAG	1 cut(s)	446
HpySE526I	ACGT	1 cut(s)	381
KspAI	GTTAAC	1 cut(s)	105
Kzo9I	GATC	2 cut(s)	57, 324
Lsp1109I	GCAGC	2 cut(s)	115, 322
LweI	GCATC	1 cut(s)	140
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	2 cut(s)	59, 326
MboI	GATC	2 cut(s)	57, 324
MboII	GAAGA	4 cut(s)	88, 221, 377, 405
MfeI	CAATTG	2 cut(s)	135, 454
MflI	RGATCY	1 cut(s)	57
MluCI	AATT	3 cut(s)	135, 252, 454
MlyI	GAGTC	2 cut(s)	240, 267
MnlI	CCTC	4 cut(s)	355, 361, 412, 453
MseI	TTAA	1 cut(s)	104
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	1 cut(s)	294
MunI	CAATTG	2 cut(s)	135, 454
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	456
NdeII	GATC	2 cut(s)	57, 324
NmuCI	GTSAC	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	130, 337
PleI	GAGTC	2 cut(s)	240, 267
PpsI	GAGTC	2 cut(s)	240, 267
PsiI	TTATAA	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	292
PspEI	GGTNACC	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	2 cut(s)	89, 313
RsaNI	GTAC	2 cut(s)	88, 312
SaqAI	TTAA	1 cut(s)	104
SatI	GCNGC	2 cut(s)	129, 336
Sau3AI	GATC	2 cut(s)	57, 324
SchI	GAGTC	2 cut(s)	240, 267
ScrFI	CCNGG	1 cut(s)	294
SetI	ASST	8 cut(s)	160, 189, 237, 307, 337, 378, 384, 445
SfaNI	GCATC	1 cut(s)	140
Sse9I	AATT	3 cut(s)	135, 252, 454
SsiI	CCGC	1 cut(s)	338
SspMI	CTAG	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	292
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	1 cut(s)	323
TasI	AATT	3 cut(s)	135, 252, 454
TatI	WGTACW	2 cut(s)	87, 311
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	2 cut(s)	128, 335
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	3 cut(s)	84, 89, 159
XapI	RAATTY	1 cut(s)	252
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.