Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001706

Physical Location & Seq

Genomic Coordinates Forward (+)

2737780 .. 2739749

Gene Structure 1970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G057200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGATCTCACTCCTGAGAAGGCTATCAACATCACCTCCGCTACTCATGGAGCCGGCCAATTCTTGTGTAGGGTCACAGAGACTTTTGGCCTTGGCCCAACAGCTCCGTCTCTACAAGCCACCTCCTTTCTCCTCCGACGATGATATTGAGGAGCAGAGAATCGAAGAAATTGCTCACAAGGTTGTGTCGCAGGTGGGTTTTGCTGAATCTAATACCCCAATTGCACAAGACCCAGAAAGGTTCAGACCCAAGAGAGCCGCTGTTTTGCTCTGTCTCTTTGAAGGGGATGTTGGGGATCTGCGTGTTATTCTCACTAAGAGGTCATCAAAGCTGTCCACCCACTCGGGTGAAGTTGCTTTGCCAGGCGGGAAAACAGAGGAGGGAGACAAAGATGATGGGGACACGGCAACAAGGGAGGCAAAAGAAGAGATTGGTTTGGATCCTTCGCTTGTCAATGTTGTCACTGTTCTCGAACCATTCTTGTCTAAGCACCTACTGAGAGTTGTCCCCGTTATTGGCATACTCAATGAAAAGGAAGCATTCAAGGCTGCTCCAAATCCTGCTGAAGTGGAAGCCGTATTCGATGCTCCATTGGAAATGTTCATCAAGGATGAAAACCGGAGGTCAGAGGAGAGGGAGTGGATGGGAAACAAGTATCTGATTCATTTCTTTGACTATGAAACCAAGAACAAGAAGTACATAATATGGGGCTTAACTGCTGGTATCTTGATTAGGGCTGCATCAATTGTATACAAACGCTCACCACCTTTTGTGGAGCAGAATCCCATTTACAAGGTTCCTAGAGTTGTAGACATAAATACCACGATTCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006104 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0010945 GO:0015936 GO:0015937 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

278

Amino Acids

31.05

Weight (kDa)

5.59

Isoelectric Point (pI)

59.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT2G33980 AT2G33980 AT2G33980 AT2G33980
fragaria_vesca	FvH4_3g08140
malus_domestica	MD05G1305000.v1.1 MD10G1284300.v1.1
prunus_persica	Prupe.4G057200_v2.0.a1
pyrus_communis	pycom05g28230 pycom10g23720
rosa_chinensis	RchiOBHm_Chr1g0373431 RchiOBHm_Chr2g0139421 RchiOBHm_Chr2g0167991 RchiOBHm_Chr2g0168001 RchiOBHm_Chr5g0010041 RchiOBHm_Chr5g0010051
rosa_laevigata	RLG00000031721 RLG00000031722
rosa_multiflora	Rmu_co8078996.1_g000001 Rmu_sc0001896.1_g000034 Rmu_sc0002275.1_g000008 Rmu_sc0016197.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066120 Rroxscaffold_1G00066130 Rroxscaffold_2G00103220
rosa_rugosa	Rorug04G0448800 Rorug04G0448900 Rorug04G0448900 Rorug04G0448900
rosa_samantha	Rh3BG108900 Rh3CG348700 Rh5AG079600 Rh5AG079700 Rh5BG074400 Rh5BG074500 Rh5CG087000 Rh5CG087100 Rh5DG075100 Rh5DG075200
rosa_wichuraiana	Rw3G023780 Rw5G007370 Rw5G007380 Rw7G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	181
Acc36I	ACCTGC	1 cut(s)	181
AccI	GTMKAC	2 cut(s)	750, 810
AciI	CCGC	3 cut(s)	38, 258, 366
AclWI	GGATC	3 cut(s)	303, 434, 447
AcoI	YGGCCR	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	1 cut(s)	698
AfiI	CCNNNNNNNGG	1 cut(s)	515
AgsI	TTSAA	2 cut(s)	281, 544
AjnI	CCWGG	1 cut(s)	361
AjuI	GAANNNNNNNTTGG	2 cut(s)	273, 305
AleI	CACNNNNGTG	1 cut(s)	345
AluBI	AGCT	2 cut(s)	103, 331
AluI	AGCT	2 cut(s)	103, 331
Alw26I	GTCTC	4 cut(s)	73, 113, 278, 378
AlwI	GGATC	3 cut(s)	303, 434, 447
Ama87I	CYCGRG	1 cut(s)	343
AoxI	GGCC	3 cut(s)	54, 87, 93
ApeKI	GCWGC	2 cut(s)	548, 737
AspS9I	GGNCC	1 cut(s)	94
AsuHPI	GGTGA	3 cut(s)	24, 359, 753
AvaI	CYCGRG	1 cut(s)	343
BamHI	GGATCC	1 cut(s)	439
BbvI	GCAGC	2 cut(s)	535, 724
BccI	CCATC	2 cut(s)	389, 637
BceAI	ACGGC	2 cut(s)	420, 560
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BciT130I	CCWGG	1 cut(s)	363
BcoDI	GTCTC	4 cut(s)	73, 113, 278, 378
BfaI	CTAG	1 cut(s)	801
BfuAI	ACCTGC	1 cut(s)	181
BisI	GCNGC	3 cut(s)	258, 549, 738
BlsI	GCNGC	3 cut(s)	259, 550, 739
Bme1390I	CCNGG	1 cut(s)	363
BmeT110I	CYCGRG	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	3 cut(s)	51, 441, 798
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	2 cut(s)	574, 749
BsaJI	CCNNGG	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	618
BsaXI	ACNNNNNCTCC	4 cut(s)	19, 49, 623, 653
Bsc4I	CCNNNNNNNGG	1 cut(s)	515
Bse118I	RCCGGY	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	3 cut(s)	292, 616, 648
BseLI	CCNNNNNNNGG	1 cut(s)	515
BseMII	CTCAG	2 cut(s)	5, 488
BseRI	GAGGAG	4 cut(s)	121, 164, 392, 644
BseXI	GCAGC	2 cut(s)	535, 724
BshFI	GGCC	3 cut(s)	56, 89, 95
BsiHKCI	CYCGRG	1 cut(s)	343
BsiSI	CCGG	2 cut(s)	53, 619
BslFI	GGGAC	2 cut(s)	413, 491
BslI	CCNNNNNNNGG	1 cut(s)	515
BsmAI	GTCTC	4 cut(s)	73, 113, 278, 378
BsmBI	CGTCTC	1 cut(s)	113
BsmFI	GGGAC	2 cut(s)	413, 491
BsmI	GAATGC	1 cut(s)	539
BsnI	GGCC	3 cut(s)	56, 89, 95
BsoBI	CYCGRG	1 cut(s)	343
Bsp143I	GATC	3 cut(s)	3, 295, 439
BspACI	CCGC	3 cut(s)	38, 258, 366
BspANI	GGCC	3 cut(s)	56, 89, 95
BspCNI	CTCAG	2 cut(s)	6, 489
BspLI	GGNNCC	3 cut(s)	51, 441, 798
BspMI	ACCTGC	1 cut(s)	181
BspPI	GGATC	3 cut(s)	303, 434, 447
BsrFI	RCCGGY	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	3 cut(s)	3, 295, 439
BssNAI	GTATAC	1 cut(s)	751
BssT1I	CCWWGG	1 cut(s)	90
Bst1107I	GTATAC	1 cut(s)	751
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	1 cut(s)	420
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	4 cut(s)	14, 315, 486, 497
BstF5I	GGATG	3 cut(s)	292, 616, 648
BstKTI	GATC	3 cut(s)	6, 298, 442
BstMAI	GTCTC	4 cut(s)	73, 113, 278, 378
BstMBI	GATC	3 cut(s)	3, 295, 439
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	361
BstV1I	GCAGC	2 cut(s)	535, 724
BstX2I	RGATCY	2 cut(s)	295, 439
BstYI	RGATCY	2 cut(s)	295, 439
BstZ17I	GTATAC	1 cut(s)	751
BsuRI	GGCC	3 cut(s)	56, 89, 95
BtsCI	GGATG	3 cut(s)	292, 616, 648
BtsIMutI	CAGTG	1 cut(s)	462
BveI	ACCTGC	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	697
CviAII	CATG	1 cut(s)	46
CviQI	GTAC	1 cut(s)	697
DdeI	CTNAG	4 cut(s)	14, 315, 486, 497
DpnI	GATC	3 cut(s)	5, 297, 441
DpnII	GATC	3 cut(s)	3, 295, 439
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Eco130I	CCWWGG	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	585
Eco88I	CYCGRG	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
Esp3I	CGTCTC	1 cut(s)	113
FaeI	CATG	1 cut(s)	49
FaiI	YATR	7 cut(s)	47, 521, 678, 701, 706, 751, 815
FaqI	GGGAC	2 cut(s)	413, 491
FatI	CATG	1 cut(s)	45
FauI	CCCGC	1 cut(s)	359
FblI	GTMKAC	2 cut(s)	750, 810
Fnu4HI	GCNGC	3 cut(s)	258, 549, 738
FokI	GGATG	3 cut(s)	299, 623, 655
Fsp4HI	GCNGC	3 cut(s)	258, 549, 738
FspBI	CTAG	1 cut(s)	801
GluI	GCNGC	3 cut(s)	258, 549, 738
HaeIII	GGCC	3 cut(s)	56, 89, 95
HapII	CCGG	2 cut(s)	53, 619
Hin1II	CATG	1 cut(s)	49
HinfI	GANTC	5 cut(s)	159, 206, 661, 781, 826
HpaII	CCGG	2 cut(s)	53, 619
HphI	GGTGA	3 cut(s)	24, 359, 753
Hpy166II	GTNNAC	3 cut(s)	336, 751, 811
Hpy188I	TCNGA	4 cut(s)	136, 245, 628, 660
Hpy188III	TCNNGA	3 cut(s)	13, 470, 727
Hpy8I	GTNNAC	3 cut(s)	336, 751, 811
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	3 cut(s)	12, 275, 453
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4V	TGCA	2 cut(s)	224, 740
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
HpyF3I	CTNAG	4 cut(s)	14, 315, 486, 497
Hsp92II	CATG	1 cut(s)	49
KroI	GCCGGC	1 cut(s)	52
KroNI	GCCGGC	1 cut(s)	54
Kzo9I	GATC	3 cut(s)	3, 295, 439
LmnI	GCTCC	6 cut(s)	49, 108, 151, 556, 592, 775
LpnPI	CCDG	9 cut(s)	26, 66, 176, 246, 348, 375, 573, 632, 705
Lsp1109I	GCAGC	2 cut(s)	535, 724
LweI	GCATC	2 cut(s)	574, 749
MaeI	CTAG	1 cut(s)	801
MaeIII	GTNAC	2 cut(s)	72, 460
MalI	GATC	3 cut(s)	5, 297, 441
MboI	GATC	3 cut(s)	3, 295, 439
MboII	GAAGA	2 cut(s)	176, 437
MfeI	CAATTG	2 cut(s)	219, 744
MflI	RGATCY	2 cut(s)	295, 439
MluCI	AATT	4 cut(s)	58, 168, 219, 744
MmeI	TCCRAC	1 cut(s)	159
MroNI	GCCGGC	1 cut(s)	52
MseI	TTAA	1 cut(s)	713
MslI	CAYNNNNRTG	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	2 cut(s)	53, 619
MspR9I	CCNGG	1 cut(s)	363
MunI	CAATTG	2 cut(s)	219, 744
Mva1269I	GAATGC	1 cut(s)	539
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	545
NaeI	GCCGGC	1 cut(s)	54
NdeII	GATC	3 cut(s)	3, 295, 439
NgoMIV	GCCGGC	1 cut(s)	52
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	3 cut(s)	51, 441, 798
NmuCI	GTSAC	2 cut(s)	72, 460
OliI	CACNNNNGTG	1 cut(s)	345
PaqCI	CACCTGC	1 cut(s)	181
PctI	GAATGC	1 cut(s)	539
PdiI	GCCGGC	1 cut(s)	54
PfeI	GAWTC	5 cut(s)	159, 206, 661, 781, 826
PkrI	GCNGC	3 cut(s)	259, 550, 739
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	3 cut(s)	51, 441, 798
PspPI	GGNCC	1 cut(s)	94
PsrI	GAACNNNNNNTAC	2 cut(s)	680, 712
PsuI	RGATCY	2 cut(s)	295, 439
RsaI	GTAC	1 cut(s)	698
RsaNI	GTAC	1 cut(s)	697
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	713
SatI	GCNGC	3 cut(s)	258, 549, 738
Sau3AI	GATC	3 cut(s)	3, 295, 439
Sau96I	GGNCC	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	363
SfaNI	GCATC	2 cut(s)	574, 749
SmiMI	CAYNNNNRTG	1 cut(s)	345
Sse9I	AATT	4 cut(s)	58, 168, 219, 744
SsiI	CCGC	3 cut(s)	38, 258, 366
SspMI	CTAG	1 cut(s)	801
StyD4I	CCNGG	1 cut(s)	361
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	466
TaqI	TCGA	3 cut(s)	162, 471, 582
TasI	AATT	4 cut(s)	58, 168, 219, 744
TatI	WGTACW	1 cut(s)	696
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	5 cut(s)	159, 206, 661, 781, 826
Tru1I	TTAA	1 cut(s)	713
Tru9I	TTAA	1 cut(s)	713
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	2 cut(s)	72, 460
TseI	GCWGC	2 cut(s)	548, 737
Tsp45I	GTSAC	2 cut(s)	72, 460
TspDTI	ATGAA	5 cut(s)	543, 592, 627, 653, 693
TspGWI	ACGGA	2 cut(s)	95, 819
TspRI	CASTG	1 cut(s)	469
XmiI	GTMKAC	2 cut(s)	750, 810
XspI	CTAG	1 cut(s)	801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.