Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001706

Physical Location & Seq

Genomic Coordinates Reverse (-)

25775175 .. 25776865

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g23720.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGATCTCAATCCTCAGAAGGCTATTACCACCGCCGCCACTACTCATGGAGCTGCCCAATGCATGCGGAGGCTCACAGAGACTCATCGTCTTAGCCCAGCAGCTCCGCCTCTACAAGCCGCCGCCTTTTCCCTCCGACGACGACATTGAGGAGCAAAGAATCGAAGAAACCGCCGGCAAGGTCGTGTCCCAGGTGGGCTTTGCCGAATCCGACACCCCAGTTGCAAGGGACCCAGAAAAGTTCAGACCCAAAAGAGCGGCCGTCTTGGTCTGTCTCTTTGAAGGGGATGCCGGCGATCTGCGCGTCATTCTCACTAAGCGGTCGTCGGGGCTTTCCACTCACTCGGGTGAAGTTTCTTTGCCGGGTGGGAAAACAGAGGACGGGGACAAGGACGATGGGGACACGGCGACGAGGGAGGCGAAAGAGGAGATAGGTTTGGATCCTAAGCTTGTCAATGTTGTGACAGTCCTTGAACCATTCTTATCGAAGCATCTGCTAAGGGTTGTTCCGGTTATTGGCATACTTAATGAGAAGGAAGCATTCAAGCCGGATCCAAATCCTGCTGAAGTGGAAGCGGTATTCGATGCTCCCTTGGAAATGTTCCTCAAGGATGAAAACCGGACGTCAAAGGAGAGGGAGTGGATGGGAGACAAGTTTCTGATCCATTTCTTCGACTACGAAACCAAGAACAAGAAGTACATGATTTGGGGCCTAACTGCTGGTATCTTGATTAGGGCCGCATCAGTTGTATACAAACGGCCACCAAATTTTGTGGAGCAAAATCCCCGTTTTAAGGTTACTAGGAGTTGTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006104 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0010945 GO:0015936 GO:0015937 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

272

Amino Acids

30.38

Weight (kDa)

5.82

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT2G33980 AT2G33980 AT2G33980 AT2G33980
fragaria_vesca	FvH4_3g08140
malus_domestica	MD05G1305000.v1.1 MD10G1284300.v1.1
prunus_persica	Prupe.4G057200_v2.0.a1
pyrus_communis	pycom05g28230 pycom10g23720
rosa_chinensis	RchiOBHm_Chr1g0373431 RchiOBHm_Chr2g0139421 RchiOBHm_Chr2g0167991 RchiOBHm_Chr2g0168001 RchiOBHm_Chr5g0010041 RchiOBHm_Chr5g0010051
rosa_laevigata	RLG00000031721 RLG00000031722
rosa_multiflora	Rmu_co8078996.1_g000001 Rmu_sc0001896.1_g000034 Rmu_sc0002275.1_g000008 Rmu_sc0016197.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066120 Rroxscaffold_1G00066130 Rroxscaffold_2G00103220
rosa_rugosa	Rorug04G0448800 Rorug04G0448900 Rorug04G0448900 Rorug04G0448900
rosa_samantha	Rh3BG108900 Rh3CG348700 Rh5AG079600 Rh5AG079700 Rh5BG074400 Rh5BG074500 Rh5CG087000 Rh5CG087100 Rh5DG075100 Rh5DG075200
rosa_wichuraiana	Rw3G023780 Rw5G007370 Rw5G007380 Rw7G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	626
AccBSI	CCGCTC	1 cut(s)	257
AccI	GTMKAC	1 cut(s)	750
AccII	CGCG	1 cut(s)	303
AclWI	GGATC	5 cut(s)	434, 447, 545, 558, 655
AcoI	YGGCCR	2 cut(s)	258, 758
AcsI	RAATTY	1 cut(s)	766
AcuI	CTGAAG	1 cut(s)	585
AcyI	GRCGYC	1 cut(s)	623
AfaI	GTAC	1 cut(s)	698
AfiI	CCNNNNNNNGG	2 cut(s)	515, 793
AgsI	TTSAA	3 cut(s)	281, 473, 544
AhdI	GACNNNNNGTC	1 cut(s)	86
AjnI	CCWGG	1 cut(s)	189
AleI	CACNNNNGTG	1 cut(s)	345
AluBI	AGCT	3 cut(s)	52, 103, 448
AluI	AGCT	3 cut(s)	52, 103, 448
Alw26I	GTCTC	3 cut(s)	73, 278, 642
AlwI	GGATC	5 cut(s)	434, 447, 545, 558, 655
Ama87I	CYCGRG	1 cut(s)	343
AoxI	GGCC	4 cut(s)	258, 709, 735, 758
ApeKI	GCWGC	2 cut(s)	52, 100
ApoI	RAATTY	1 cut(s)	766
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	3 cut(s)	229, 709, 735
AsuC2I	CCSGG	1 cut(s)	363
AsuHPI	GGTGA	1 cut(s)	359
AvaI	CYCGRG	1 cut(s)	343
AvaII	GGWCC	1 cut(s)	229
BamHI	GGATCC	2 cut(s)	439, 550
BbvI	GCAGC	2 cut(s)	39, 112
BccI	CCATC	2 cut(s)	389, 637
BceAI	ACGGC	3 cut(s)	245, 420, 773
BcgI	CGANNNNNNTGC	2 cut(s)	475, 509
BciT130I	CCWGG	1 cut(s)	191
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	3 cut(s)	73, 278, 642
BfaI	CTAG	1 cut(s)	801
BisI	GCNGC	7 cut(s)	35, 53, 101, 119, 122, 258, 738
BlsI	GCNGC	7 cut(s)	36, 54, 102, 120, 123, 259, 739
Bme1390I	CCNGG	2 cut(s)	191, 363
Bme18I	GGWCC	1 cut(s)	229
BmeRI	GACNNNNNGTC	1 cut(s)	86
BmeT110I	CYCGRG	1 cut(s)	343
BmgT120I	GGNCC	3 cut(s)	229, 709, 735
BmiI	GGNNCC	5 cut(s)	230, 231, 441, 552, 710
BmrFI	CCNGG	2 cut(s)	191, 363
BmrI	ACTGGG	1 cut(s)	212
BmsI	GCATC	4 cut(s)	277, 499, 574, 749
BmuI	ACTGGG	1 cut(s)	212
Bpu10I	CCTNAGC	2 cut(s)	444, 497
BpuEI	CTTGAG	1 cut(s)	590
BpuMI	CCSGG	1 cut(s)	363
BsaBI	GATNNNNATC	2 cut(s)	8, 555
BsaHI	GRCGYC	1 cut(s)	623
BsaJI	CCNNGG	2 cut(s)	189, 591
BsaWI	WCCGGW	2 cut(s)	508, 618
BsaXI	ACNNNNNCTCC	2 cut(s)	623, 653
Bsc4I	CCNNNNNNNGG	2 cut(s)	515, 793
Bse118I	RCCGGY	2 cut(s)	173, 290
Bse1I	ACTGG	1 cut(s)	218
Bse8I	GATNNNNATC	2 cut(s)	8, 555
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	2 cut(s)	189, 591
BseGI	GGATG	3 cut(s)	292, 616, 648
BseJI	GATNNNNATC	2 cut(s)	8, 555
BseLI	CCNNNNNNNGG	2 cut(s)	515, 793
BseMII	CTCAG	1 cut(s)	28
BseNI	ACTGG	1 cut(s)	218
BseRI	GAGGAG	2 cut(s)	164, 440
BseX3I	CGGCCG	1 cut(s)	258
BseXI	GCAGC	2 cut(s)	39, 112
BseYI	CCCAGC	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	303
Bsh1285I	CGRYCG	2 cut(s)	261, 323
BshFI	GGCC	4 cut(s)	260, 711, 737, 760
BsiEI	CGRYCG	2 cut(s)	261, 323
BsiHKCI	CYCGRG	1 cut(s)	343
BsiSI	CCGG	6 cut(s)	174, 291, 362, 509, 548, 619
BslFI	GGGAC	4 cut(s)	172, 242, 398, 413
BslI	CCNNNNNNNGG	2 cut(s)	515, 793
BsmAI	GTCTC	3 cut(s)	73, 278, 642
BsmFI	GGGAC	4 cut(s)	172, 242, 398, 413
BsmI	GAATGC	1 cut(s)	539
BsnI	GGCC	4 cut(s)	260, 711, 737, 760
BsoBI	CYCGRG	1 cut(s)	343
Bsp143I	GATC	5 cut(s)	3, 295, 439, 550, 660
BspANI	GGCC	4 cut(s)	260, 711, 737, 760
BspCNI	CTCAG	1 cut(s)	27
BspFNI	CGCG	1 cut(s)	303
BspLI	GGNNCC	5 cut(s)	230, 231, 441, 552, 710
BspPI	GGATC	5 cut(s)	434, 447, 545, 558, 655
BsrBI	CCGCTC	1 cut(s)	257
BsrFI	RCCGGY	2 cut(s)	173, 290
BsrI	ACTGG	1 cut(s)	218
BssAI	RCCGGY	2 cut(s)	173, 290
BssECI	CCNNGG	2 cut(s)	189, 591
BssMI	GATC	5 cut(s)	3, 295, 439, 550, 660
BssNAI	GTATAC	1 cut(s)	751
BssNI	GRCGYC	1 cut(s)	623
BssT1I	CCWWGG	1 cut(s)	591
Bst1107I	GTATAC	1 cut(s)	751
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	466
BstACI	GRCGYC	1 cut(s)	623
BstC8I	GCNNGC	3 cut(s)	64, 175, 292
BstDEI	CTNAG	5 cut(s)	14, 91, 315, 444, 497
BstF5I	GGATG	3 cut(s)	292, 616, 648
BstFNI	CGCG	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	5 cut(s)	6, 298, 442, 553, 663
BstMAI	GTCTC	3 cut(s)	73, 278, 642
BstMBI	GATC	5 cut(s)	3, 295, 439, 550, 660
BstMCI	CGRYCG	2 cut(s)	261, 323
BstMWI	GCNNNNNNNGC	1 cut(s)	300
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	1 cut(s)	66
BstSCI	CCNGG	2 cut(s)	189, 361
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	2 cut(s)	39, 112
BstX2I	RGATCY	2 cut(s)	439, 550
BstYI	RGATCY	2 cut(s)	439, 550
BstZ17I	GTATAC	1 cut(s)	751
BstZI	CGGCCG	1 cut(s)	258
BsuRI	GGCC	4 cut(s)	260, 711, 737, 760
BtsCI	GGATG	3 cut(s)	292, 616, 648
Cac8I	GCNNGC	3 cut(s)	64, 175, 292
CfoI	GCGC	1 cut(s)	303
Cfr10I	RCCGGY	2 cut(s)	173, 290
Cfr13I	GGNCC	3 cut(s)	229, 709, 735
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	697
CspCI	CAANNNNNGTGG	2 cut(s)	753, 788
CviAII	CATG	3 cut(s)	46, 63, 700
CviQI	GTAC	1 cut(s)	697
DdeI	CTNAG	5 cut(s)	14, 91, 315, 444, 497
DpnI	GATC	5 cut(s)	5, 297, 441, 552, 662
DpnII	GATC	5 cut(s)	3, 295, 439, 550, 660
DriI	GACNNNNNGTC	1 cut(s)	86
EaeI	YGGCCR	2 cut(s)	258, 758
EagI	CGGCCG	1 cut(s)	258
Eam1105I	GACNNNNNGTC	1 cut(s)	86
EciI	GGCGGA	1 cut(s)	95
EclXI	CGGCCG	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	591
Eco47I	GGWCC	1 cut(s)	229
Eco52I	CGGCCG	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	585
Eco88I	CYCGRG	1 cut(s)	343
EcoO109I	RGGNCCY	2 cut(s)	229, 709
EcoRII	CCWGG	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	591
EcoT22I	ATGCAT	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	3 cut(s)	49, 66, 703
FaiI	YATR	5 cut(s)	47, 64, 521, 701, 751
FaqI	GGGAC	4 cut(s)	172, 242, 398, 413
FatI	CATG	3 cut(s)	45, 62, 699
FblI	GTMKAC	1 cut(s)	750
Fnu4HI	GCNGC	7 cut(s)	35, 53, 101, 119, 122, 258, 738
FokI	GGATG	3 cut(s)	299, 623, 655
Fsp4HI	GCNGC	7 cut(s)	35, 53, 101, 119, 122, 258, 738
FspBI	CTAG	1 cut(s)	801
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	7 cut(s)	35, 53, 101, 119, 122, 258, 738
GsaI	CCCAGC	1 cut(s)	100
HaeIII	GGCC	4 cut(s)	260, 711, 737, 760
HapII	CCGG	6 cut(s)	174, 291, 362, 509, 548, 619
HgaI	GACGC	1 cut(s)	292
HhaI	GCGC	1 cut(s)	303
Hin1I	GRCGYC	1 cut(s)	623
Hin1II	CATG	3 cut(s)	49, 66, 703
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	3 cut(s)	81, 159, 206
HpaII	CCGG	6 cut(s)	174, 291, 362, 509, 548, 619
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	1 cut(s)	751
Hpy188I	TCNGA	5 cut(s)	17, 136, 211, 245, 660
Hpy188III	TCNNGA	1 cut(s)	727
Hpy8I	GTNNAC	1 cut(s)	751
Hpy99I	CGWCG	4 cut(s)	140, 143, 328, 412
HpyAV	CCTTC	3 cut(s)	12, 275, 526
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4IV	ACGT	1 cut(s)	623
HpyCH4V	TGCA	2 cut(s)	62, 224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	300
HpyF3I	CTNAG	5 cut(s)	14, 91, 315, 444, 497
HpySE526I	ACGT	1 cut(s)	623
Hsp92I	GRCGYC	1 cut(s)	623
Hsp92II	CATG	3 cut(s)	49, 66, 703
HspAI	GCGC	1 cut(s)	301
KflI	GGGWCCC	1 cut(s)	229
KroI	GCCGGC	2 cut(s)	173, 290
KroNI	GCCGGC	2 cut(s)	175, 292
Kzo9I	GATC	5 cut(s)	3, 295, 439, 550, 660
LmnI	GCTCC	5 cut(s)	49, 108, 151, 592, 775
Lsp1109I	GCAGC	2 cut(s)	39, 112
LweI	GCATC	4 cut(s)	277, 499, 574, 749
MaeI	CTAG	1 cut(s)	801
MaeII	ACGT	1 cut(s)	623
MaeIII	GTNAC	2 cut(s)	460, 796
MalI	GATC	5 cut(s)	5, 297, 441, 552, 662
MbiI	CCGCTC	1 cut(s)	257
MboI	GATC	5 cut(s)	3, 295, 439, 550, 660
MboII	GAAGA	2 cut(s)	176, 661
MflI	RGATCY	2 cut(s)	439, 550
MluCI	AATT	1 cut(s)	766
MlyI	GAGTC	1 cut(s)	75
MmeI	TCCRAC	2 cut(s)	159, 234
Mph1103I	ATGCAT	1 cut(s)	64
MroNI	GCCGGC	2 cut(s)	173, 290
MseI	TTAA	2 cut(s)	525, 792
MslI	CAYNNNNRTG	1 cut(s)	345
MspI	CCGG	6 cut(s)	174, 291, 362, 509, 548, 619
MspR9I	CCNGG	2 cut(s)	191, 363
Mva1269I	GAATGC	1 cut(s)	539
MvaI	CCWGG	1 cut(s)	191
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	1 cut(s)	300
NaeI	GCCGGC	2 cut(s)	175, 292
NciI	CCSGG	1 cut(s)	363
NdeII	GATC	5 cut(s)	3, 295, 439, 550, 660
NgoMIV	GCCGGC	2 cut(s)	173, 290
NlaIII	CATG	3 cut(s)	49, 66, 703
NlaIV	GGNNCC	5 cut(s)	230, 231, 441, 552, 710
NmuCI	GTSAC	1 cut(s)	460
NsiI	ATGCAT	1 cut(s)	64
NspI	RCATGY	1 cut(s)	66
OliI	CACNNNNGTG	1 cut(s)	345
PaeI	GCATGC	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	1 cut(s)	416
PctI	GAATGC	1 cut(s)	539
PdiI	GCCGGC	2 cut(s)	175, 292
PfeI	GAWTC	2 cut(s)	159, 206
PkrI	GCNGC	7 cut(s)	36, 54, 102, 120, 123, 259, 739
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
PpuMI	RGGWCCY	1 cut(s)	229
Psp5II	RGGWCCY	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	5 cut(s)	230, 231, 441, 552, 710
PspPI	GGNCC	3 cut(s)	229, 709, 735
PspPPI	RGGWCCY	1 cut(s)	229
PsrI	GAACNNNNNNTAC	2 cut(s)	680, 712
PsuI	RGATCY	2 cut(s)	439, 550
RsaI	GTAC	1 cut(s)	698
RsaNI	GTAC	1 cut(s)	697
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	525, 792
SatI	GCNGC	7 cut(s)	35, 53, 101, 119, 122, 258, 738
Sau3AI	GATC	5 cut(s)	3, 295, 439, 550, 660
Sau96I	GGNCC	3 cut(s)	229, 709, 735
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	2 cut(s)	191, 363
SetI	ASST	8 cut(s)	54, 105, 183, 195, 436, 450, 626, 798
SfaNI	GCATC	4 cut(s)	277, 499, 574, 749
SinI	GGWCC	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
SphI	GCATGC	1 cut(s)	66
Sse9I	AATT	1 cut(s)	766
SspMI	CTAG	1 cut(s)	801
StyD4I	CCNGG	2 cut(s)	189, 361
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	1 cut(s)	466
TaiI	ACGT	1 cut(s)	626
TaqI	TCGA	4 cut(s)	162, 485, 582, 672
TasI	AATT	1 cut(s)	766
TatI	WGTACW	1 cut(s)	696
TauI	GCSGC	5 cut(s)	37, 121, 124, 260, 740
TfiI	GAWTC	2 cut(s)	159, 206
Tru1I	TTAA	2 cut(s)	525, 792
Tru9I	TTAA	2 cut(s)	525, 792
TseFI	GTSAC	1 cut(s)	460
TseI	GCWGC	2 cut(s)	52, 100
Tsp45I	GTSAC	1 cut(s)	460
TspDTI	ATGAA	1 cut(s)	627
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	1 cut(s)	766
XceI	RCATGY	1 cut(s)	66
XmiI	GTMKAC	1 cut(s)	750
XspI	CTAG	1 cut(s)	801
ZraI	GACGTC	1 cut(s)	624
Zsp2I	ATGCAT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.