Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001706

Physical Location & Seq

Genomic Coordinates Reverse (-)

41619575 .. 41625284

Gene Structure 5710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG348700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTTGTATACTGTCAGTGAGGTTTCTTTGCCAGGTGGGAAAACAAAGGATGGAGACAAGGATGATGGTGACACAGCAACAAGAGAAGCGAAAGAGGAGATTGGTTTGGATCCTAAGCTTGTGAATGTTGTCACTGTTCTTGAACCATTTTTGTCAAAGCACCTACTGAGAGTTGTACCTGTTATCGGTATACTTAACGATAAGGAAGCATTCAAGCCTGCTCCAAATCCGGCCGAAGTGGAATCAGTATTTGATGCTCCCTTGGAAATGTTCATCAAGGATGAAAACAGGAGGGCAGAGGAGAGAGAGTGGATGGGTAACAAATACCTGATTTATTTCTTTGACTATGAAACCAACAACAAGAAGTACATGATATGGGGCTTAACTGCTGGTATCTTGATTAGGGCTGCATCAATTGAAGAAAATGAAACACCTGGATGGACCCAACTGAAGCTTCCTGGTCAAGCTCCTTCTGCACGTTGTGGCCATACCATCACATCTGGAGGACACTATGTAATTGACATTTCACAAGTTTTATTAGTTTTTCTGTCTTTGTTTTGTGCCTGTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006104 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0010945 GO:0015936 GO:0015937 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

190

Amino Acids

21.21

Weight (kDa)

4.96

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	9 - 99	9.2e-08	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT2G33980 AT2G33980 AT2G33980 AT2G33980
fragaria_vesca	FvH4_3g08140
malus_domestica	MD05G1305000.v1.1 MD10G1284300.v1.1
prunus_persica	Prupe.4G057200_v2.0.a1
pyrus_communis	pycom05g28230 pycom10g23720
rosa_chinensis	RchiOBHm_Chr1g0373431 RchiOBHm_Chr2g0139421 RchiOBHm_Chr2g0167991 RchiOBHm_Chr2g0168001 RchiOBHm_Chr5g0010041 RchiOBHm_Chr5g0010051
rosa_laevigata	RLG00000031721 RLG00000031722
rosa_multiflora	Rmu_co8078996.1_g000001 Rmu_sc0001896.1_g000034 Rmu_sc0002275.1_g000008 Rmu_sc0016197.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066120 Rroxscaffold_1G00066130 Rroxscaffold_2G00103220
rosa_rugosa	Rorug04G0448800 Rorug04G0448900 Rorug04G0448900 Rorug04G0448900
rosa_samantha	Rh3BG108900 Rh3CG348700 Rh5AG079600 Rh5AG079700 Rh5BG074400 Rh5BG074500 Rh5CG087000 Rh5CG087100 Rh5DG075100 Rh5DG075200
rosa_wichuraiana	Rw3G023780 Rw5G007370 Rw5G007380 Rw7G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	8, 190
AclWI	GGATC	2 cut(s)	104, 117
AcoI	YGGCCR	2 cut(s)	231, 484
AcuI	CTGAAG	1 cut(s)	470
AdeI	CACNNNGTG	1 cut(s)	482
AfaI	GTAC	2 cut(s)	177, 368
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	3 cut(s)	143, 214, 419
AjnI	CCWGG	3 cut(s)	31, 433, 457
AjuI	GAANNNNNNNTTGG	2 cut(s)	438, 470
AluBI	AGCT	3 cut(s)	118, 454, 467
AluI	AGCT	3 cut(s)	118, 454, 467
Alw26I	GTCTC	1 cut(s)	48
AlwI	GGATC	2 cut(s)	104, 117
AoxI	GGCC	2 cut(s)	231, 484
ApeKI	GCWGC	1 cut(s)	407
AspS9I	GGNCC	1 cut(s)	441
AsuHPI	GGTGA	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	441
BalI	TGGCCA	1 cut(s)	486
BamHI	GGATCC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	5 cut(s)	44, 59, 307, 432, 500
BciT130I	CCWGG	3 cut(s)	33, 435, 459
BcoDI	GTCTC	1 cut(s)	48
BisI	GCNGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	409
Bme1390I	CCNGG	3 cut(s)	33, 435, 459
Bme18I	GGWCC	1 cut(s)	441
BmgT120I	GGNCC	1 cut(s)	441
BmiI	GGNNCC	2 cut(s)	111, 443
BmrFI	CCNGG	3 cut(s)	33, 435, 459
BmsI	GCATC	2 cut(s)	244, 419
BpmI	CTGGAG	1 cut(s)	522
Bpu10I	CCTNAGC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	261
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
BseBI	CCWGG	3 cut(s)	33, 435, 459
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	5 cut(s)	55, 67, 286, 318, 443
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	1 cut(s)	158
BseRI	GAGGAG	2 cut(s)	110, 314
BseX3I	CGGCCG	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	394
BsgI	GTGCAG	1 cut(s)	459
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	2 cut(s)	233, 486
BsiEI	CGRYCG	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	48
BsmI	GAATGC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	233, 486
Bsp143I	GATC	1 cut(s)	109
BspANI	GGCC	2 cut(s)	233, 486
BspCNI	CTCAG	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	111, 443
BspPI	GGATC	2 cut(s)	104, 117
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	1 cut(s)	109
BssNAI	GTATAC	2 cut(s)	9, 191
BssT1I	CCWWGG	1 cut(s)	261
Bst1107I	GTATAC	2 cut(s)	9, 191
Bst2UI	CCWGG	3 cut(s)	33, 435, 459
Bst4CI	ACNGT	2 cut(s)	13, 136
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	2 cut(s)	114, 167
BstF5I	GGATG	5 cut(s)	55, 67, 286, 318, 443
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	109
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	1 cut(s)	473
BstNI	CCWGG	3 cut(s)	33, 435, 459
BstSCI	CCNGG	3 cut(s)	31, 433, 457
BstV1I	GCAGC	1 cut(s)	394
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BstZ17I	GTATAC	2 cut(s)	9, 191
BstZI	CGGCCG	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	233, 486
BtsCI	GGATG	5 cut(s)	55, 67, 286, 318, 443
BtsIMutI	CAGTG	2 cut(s)	22, 132
Cac8I	GCNNGC	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	441
Csp6I	GTAC	2 cut(s)	176, 367
CviAII	CATG	1 cut(s)	370
CviJI	RGCY	8 cut(s)	118, 217, 233, 381, 407, 454, 467, 486
CviKI_1	RGCY	8 cut(s)	118, 217, 233, 381, 407, 454, 467, 486
CviQI	GTAC	2 cut(s)	176, 367
DdeI	CTNAG	2 cut(s)	114, 167
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
DraIII	CACNNNGTG	1 cut(s)	482
EaeI	YGGCCR	2 cut(s)	231, 484
EagI	CGGCCG	1 cut(s)	231
EclXI	CGGCCG	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	441
Eco52I	CGGCCG	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	470
EcoRII	CCWGG	3 cut(s)	31, 433, 457
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	1 cut(s)	373
FaiI	YATR	7 cut(s)	9, 191, 348, 371, 376, 489, 513
FatI	CATG	1 cut(s)	369
FblI	GTMKAC	2 cut(s)	8, 190
Fnu4HI	GCNGC	1 cut(s)	408
FokI	GGATG	5 cut(s)	62, 74, 293, 325, 450
Fsp4HI	GCNGC	1 cut(s)	408
GluI	GCNGC	1 cut(s)	408
GsuI	CTGGAG	1 cut(s)	522
HaeIII	GGCC	2 cut(s)	233, 486
HapII	CCGG	1 cut(s)	230
Hin1II	CATG	1 cut(s)	373
HindIII	AAGCTT	2 cut(s)	116, 452
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	2 cut(s)	9, 191
Hpy188III	TCNNGA	3 cut(s)	140, 397, 501
Hpy8I	GTNNAC	2 cut(s)	9, 191
HpyAV	CCTTC	1 cut(s)	480
HpyCH4III	ACNGT	2 cut(s)	13, 136
HpyCH4IV	ACGT	1 cut(s)	478
HpyCH4V	TGCA	2 cut(s)	410, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	473
HpyF3I	CTNAG	2 cut(s)	114, 167
HpySE526I	ACGT	1 cut(s)	478
Hsp92II	CATG	1 cut(s)	373
Kzo9I	GATC	1 cut(s)	109
LmnI	GCTCC	3 cut(s)	226, 262, 472
Lsp1109I	GCAGC	1 cut(s)	394
LweI	GCATC	2 cut(s)	244, 419
MaeII	ACGT	1 cut(s)	478
MaeIII	GTNAC	3 cut(s)	68, 130, 317
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	1 cut(s)	431
MfeI	CAATTG	1 cut(s)	414
MflI	RGATCY	1 cut(s)	109
MlsI	TGGCCA	1 cut(s)	486
MluCI	AATT	2 cut(s)	414, 516
MluNI	TGGCCA	1 cut(s)	486
MnlI	CCTC	5 cut(s)	13, 88, 285, 292, 497
Mox20I	TGGCCA	1 cut(s)	486
MscI	TGGCCA	1 cut(s)	486
MseI	TTAA	2 cut(s)	195, 383
MslI	CAYNNNNRTG	1 cut(s)	436
Msp20I	TGGCCA	1 cut(s)	486
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	3 cut(s)	33, 435, 459
MunI	CAATTG	1 cut(s)	414
Mva1269I	GAATGC	1 cut(s)	209
MvaI	CCWGG	3 cut(s)	33, 435, 459
MwoI	GCNNNNNNNGC	1 cut(s)	473
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	1 cut(s)	373
NlaIV	GGNNCC	2 cut(s)	111, 443
NmuCI	GTSAC	2 cut(s)	68, 130
PctI	GAATGC	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	409
Psp6I	CCWGG	3 cut(s)	31, 433, 457
PspGI	CCWGG	3 cut(s)	31, 433, 457
PspN4I	GGNNCC	2 cut(s)	111, 443
PspPI	GGNCC	1 cut(s)	441
PsuI	RGATCY	1 cut(s)	109
RsaI	GTAC	2 cut(s)	177, 368
RsaNI	GTAC	2 cut(s)	176, 367
RseI	CAYNNNNRTG	1 cut(s)	436
SaqAI	TTAA	2 cut(s)	195, 383
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	1 cut(s)	109
Sau96I	GGNCC	1 cut(s)	441
ScrFI	CCNGG	3 cut(s)	33, 435, 459
SfaNI	GCATC	2 cut(s)	244, 419
SinI	GGWCC	1 cut(s)	441
SmiMI	CAYNNNNRTG	1 cut(s)	436
Sse9I	AATT	2 cut(s)	414, 516
StyD4I	CCNGG	3 cut(s)	31, 433, 457
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	2 cut(s)	13, 136
TaiI	ACGT	1 cut(s)	481
TasI	AATT	2 cut(s)	414, 516
TatI	WGTACW	1 cut(s)	366
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	2 cut(s)	195, 383
Tru9I	TTAA	2 cut(s)	195, 383
TscAI	CASTG	2 cut(s)	22, 139
TseFI	GTSAC	2 cut(s)	68, 130
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	2 cut(s)	68, 130
TspDTI	ATGAA	4 cut(s)	262, 297, 363, 441
TspRI	CASTG	2 cut(s)	22, 139
VpaK11BI	GGWCC	1 cut(s)	441
XmiI	GTMKAC	2 cut(s)	8, 190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.