FvH4_3g08140

NUDIX domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
4791318 .. 4796746
5429 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08140.t1

Sequence Viewer

Length: 1458 bp
ATGTTCTCAATCCTCAGAAGACTAACAACCTCGCTCCCACCACTAATGGACCCACTCAACTCCTCACATCGACTTCTGGCCCTGACACAACACCTCCGCCTCTACAAGCCACCCTCTTCGTCCTGGGACGACGACGACGACTCCGAGGTGGGCTTTGCTGAGTCTCAAACCACAATTGCTAAAGACCCAGAAACGTTCAGGCCCAGAAGAGCAGCTGTTTTGATCTGTTTGTTTGAAGGAGATGGTGGTGATCTACGTGTTGTTCTGACCAAGAGGTCGTCGGGGTTGTCCACTCACTCTGGTGAAGTTTCTTTACCAGGTGGGAAAACAGAGGAGGGGGACAAGGATGATGGTGACACAGCTACAAGGGAAGCCAAGGAGGAGATTGGTTTGGATCCTAAGCTTGTCAATGTTGTCACGGTTCTTGAGCCATTTTTGTCCAAGCACCTACTGAGAGTTGTACCTGTTATTGGTGTACTTAACGATAAGGAAGCATTCAAGCCTTCTCCAAATCCGTCCGAAGTGGAAGCAGTATTTGATGCTCCCTTGGAAATGTTCATCAAGGATGACAACCGCAGACAAGAGATGAGAGAGTGGAATGGGAACAAGTATCTGATTCATATCTTTGATTATGAAATGAAGAATAAGTACACAATATGGGGCTTAACTGCTAGTATCTTGATTAGGGCTGCATCAATTGTATACGAACGGCCACCACCTTTTGAGGAGCAAAATCCCAGTTATAAGGCTGCTTTTGCTGAAAAAACTAATGGAATGGGTTCAAGCAACCTAGAACAGAGACTCCAAACTCTAGCACAACATTTTAGACTCCAGAAACCAGTGAAACCTGATCTATCACCTACCAGTACCACTGGCTCGATCAAAAGAGCTGCTGTTCTGGTGTGTCTTTTCCATGGGGAAGAGGGCAACCTGCATGTTATTCTCACAAAGCGAGCCACAACTCTCTCTTCTCACTCTGGTGAGGTGGCTCTCCCCGGCGGTAAAAGAGAGCAAGGTGATGCTGATGATGTCGACACTGCTCTCCGGGAGGCGAAGGAAGAGATTGGTTTAGACCCTTCCCAAGTCAACATTGTCACCATTCTTGAACCTTTTGTGAACAAGCTTGGTATGACAGTGGTTCCTGTAATTGGCTTACTTTCTAACAAGGAAGCATTTGATCCAGCTCCAAATGCTGCAGAAGTGGAAGCAATCTTTTATGCTCCATTAGAAATGTTTCTCAAGGATGAGAACAGAAGAGCAGAGGAGAGAGAATGGATGGGAGACAAGTATCTGTTACAACATTTCTACTTTGAAGATCATGGTAAAGAGTATGACATATGGGCTATAACTGCTGGAATTCTGATCAAGACTGCTTCACTTGTCTACCAGCGCCAGCCAGCTTTTCTTGAACAGAGGCCAAAATTTTGGAGTGGAACTGCTCATCATACCACAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

486

Amino Acids

54.25

Weight (kDa)

5.39

Isoelectric Point (pI)

50.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 69 - 191 3.1e-14 NUDIX domain
NUDIX PF00293 296 - 421 6.3e-12 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 744
AasI GACNNNNNNGTC 1 cut(s) 274
Acc36I ACCTGC 1 cut(s) 939
AccI GTMKAC 3 cut(s) 702, 1032, 1383
AciI CCGC 3 cut(s) 97, 574, 999
AclI AACGTT 1 cut(s) 194
AclWI GGATC 3 cut(s) 389, 402, 1172
AcoI YGGCCR 1 cut(s) 710
AcsI RAATTY 2 cut(s) 1356, 1421
AfaI GTAC 4 cut(s) 462, 477, 650, 868
AfiI CCNNNNNNNGG 2 cut(s) 470, 1148
AflIII ACRYGT 1 cut(s) 256
AgsI TTSAA 6 cut(s) 236, 499, 783, 1106, 1313, 1409
AjnI CCWGG 2 cut(s) 122, 316
AleI CACNNNNGTG 2 cut(s) 300, 978
AloI GAACNNNNNNTCC 2 cut(s) 786, 818
AluBI AGCT 7 cut(s) 215, 362, 403, 890, 1123, 1184, 1400
AluI AGCT 7 cut(s) 215, 362, 403, 890, 1123, 1184, 1400
Alw26I GTCTC 3 cut(s) 168, 793, 1275
AlwI GGATC 3 cut(s) 389, 402, 1172
AoxI GGCC 4 cut(s) 78, 200, 710, 1415
ApeKI GCWGC 5 cut(s) 212, 689, 749, 890, 1193
ApoI RAATTY 2 cut(s) 1356, 1421
Asp700I GAANNNNTTC 2 cut(s) 778, 1233
AspLEI GCGC 1 cut(s) 1392
AspS9I GGNCC 3 cut(s) 49, 79, 201
AsuC2I CCSGG 2 cut(s) 996, 1046
AsuHPI GGTGA 7 cut(s) 260, 314, 365, 849, 992, 1028, 1087
AvaII GGWCC 1 cut(s) 49
BamHI GGATCC 1 cut(s) 394
BarI GAAGNNNNNNTAC 4 cut(s) 297, 329, 632, 664
BbsI GAAGAC 1 cut(s) 25
BbvI GCAGC 5 cut(s) 224, 676, 736, 877, 1180
BccI CCATC 3 cut(s) 236, 344, 1270
BceAI ACGGC 1 cut(s) 725
BciT130I CCWGG 2 cut(s) 124, 318
BclI TGATCA 1 cut(s) 1362
BcnI CCSGG 2 cut(s) 996, 1046
BcoDI GTCTC 3 cut(s) 168, 793, 1275
BfaI CTAG 4 cut(s) 672, 791, 812, 1456
BfmI CTRYAG 1 cut(s) 1194
BfoI RGCGCY 1 cut(s) 1393
BfuAI ACCTGC 1 cut(s) 939
BisI GCNGC 5 cut(s) 213, 690, 750, 891, 1194
BlsI GCNGC 5 cut(s) 214, 691, 751, 892, 1195
Bme1390I CCNGG 4 cut(s) 124, 318, 996, 1046
Bme18I GGWCC 1 cut(s) 49
BmgT120I GGNCC 3 cut(s) 49, 79, 201
BmiI GGNNCC 3 cut(s) 51, 396, 1140
BmrFI CCNGG 4 cut(s) 124, 318, 996, 1046
BmrI ACTGGG 1 cut(s) 732
BmsI GCATC 3 cut(s) 529, 701, 1009
BmuI ACTGGG 1 cut(s) 732
BpiI GAAGAC 1 cut(s) 25
BpmI CTGGAG 1 cut(s) 815
Bpu10I CCTNAGC 1 cut(s) 399
BpuEI CTTGAG 2 cut(s) 446, 1223
BpuMI CCSGG 2 cut(s) 996, 1046
BsaAI YACGTR 1 cut(s) 257
BsaBI GATNNNNATC 1 cut(s) 620
BsaJI CCNNGG 6 cut(s) 123, 144, 375, 546, 913, 994
BsaXI ACNNNNNCTCC 6 cut(s) 78, 108, 125, 155, 786, 816
Bsc4I CCNNNNNNNGG 2 cut(s) 470, 1148
Bse1I ACTGG 4 cut(s) 738, 839, 864, 877
Bse8I GATNNNNATC 1 cut(s) 620
BseBI CCWGG 2 cut(s) 124, 318
BseDI CCNNGG 6 cut(s) 123, 144, 375, 546, 913, 994
BseGI GGATG 4 cut(s) 352, 571, 1249, 1281
BseJI GATNNNNATC 1 cut(s) 620
BseLI CCNNNNNNNGG 2 cut(s) 470, 1148
BseMII CTCAG 3 cut(s) 28, 150, 443
BseNI ACTGG 4 cut(s) 738, 839, 864, 877
BseRI GAGGAG 5 cut(s) 52, 347, 395, 740, 1277
BseXI GCAGC 5 cut(s) 224, 676, 736, 877, 1180
BshFI GGCC 4 cut(s) 80, 202, 712, 1417
BsiSI CCGG 2 cut(s) 996, 1045
BslFI GGGAC 2 cut(s) 140, 353
BslI CCNNNNNNNGG 2 cut(s) 470, 1148
BsmAI GTCTC 3 cut(s) 168, 793, 1275
BsmFI GGGAC 2 cut(s) 140, 353
BsmI GAATGC 1 cut(s) 494
BsnI GGCC 4 cut(s) 80, 202, 712, 1417
Bsp143I GATC 8 cut(s) 222, 250, 394, 850, 879, 1177, 1315, 1362
Bsp19I CCATGG 1 cut(s) 913
BspACI CCGC 3 cut(s) 97, 574, 999
BspANI GGCC 4 cut(s) 80, 202, 712, 1417
BspCNI CTCAG 3 cut(s) 27, 151, 444
BspLI GGNNCC 3 cut(s) 51, 396, 1140
BspMAI CTGCAG 1 cut(s) 1198
BspMI ACCTGC 1 cut(s) 939
BspPI GGATC 3 cut(s) 389, 402, 1172
BspQI GCTCTTC 2 cut(s) 202, 1249
BsrI ACTGG 4 cut(s) 738, 839, 864, 877
BssECI CCNNGG 6 cut(s) 123, 144, 375, 546, 913, 994
BssMI GATC 8 cut(s) 222, 250, 394, 850, 879, 1177, 1315, 1362
BssNAI GTATAC 1 cut(s) 703
BssT1I CCWWGG 3 cut(s) 375, 546, 913
Bst1107I GTATAC 1 cut(s) 703
Bst2UI CCWGG 2 cut(s) 124, 318
Bst4CI ACNGT 2 cut(s) 421, 1135
Bst6I CTCTTC 6 cut(s) 121, 202, 915, 973, 1053, 1249
BstBAI YACGTR 1 cut(s) 257
BstC8I GCNNGC 3 cut(s) 954, 1394, 1398
BstDEI CTNAG 4 cut(s) 14, 159, 399, 452
BstDSI CCRYGG 1 cut(s) 913
BstF5I GGATG 4 cut(s) 352, 571, 1249, 1281
BstH2I RGCGCY 1 cut(s) 1393
BstHHI GCGC 1 cut(s) 1392
BstKTI GATC 8 cut(s) 225, 253, 397, 853, 882, 1180, 1318, 1365
BstMAI GTCTC 3 cut(s) 168, 793, 1275
BstMBI GATC 8 cut(s) 222, 250, 394, 850, 879, 1177, 1315, 1362
BstMWI GCNNNNNNNGC 3 cut(s) 755, 1190, 1349
BstNI CCWGG 2 cut(s) 124, 318
BstNSI RCATGY 1 cut(s) 938
BstSCI CCNGG 4 cut(s) 122, 316, 994, 1044
BstSFI CTRYAG 1 cut(s) 1194
BstV1I GCAGC 5 cut(s) 224, 676, 736, 877, 1180
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 394
BstXI CCANNNNNNTGG 1 cut(s) 1425
BstYI RGATCY 1 cut(s) 394
BstZ17I GTATAC 1 cut(s) 703
BsuRI GGCC 4 cut(s) 80, 202, 712, 1417
BtgI CCRYGG 1 cut(s) 913
BtsCI GGATG 4 cut(s) 352, 571, 1249, 1281
BtsI GCAGTG 1 cut(s) 1035
BtsIMutI CAGTG 4 cut(s) 846, 870, 1035, 1140
BveI ACCTGC 1 cut(s) 939
Cac8I GCNNGC 3 cut(s) 954, 1394, 1398
CfoI GCGC 1 cut(s) 1392
Cfr13I GGNCC 3 cut(s) 49, 79, 201
CsiI ACCWGGT 1 cut(s) 316
Csp6I GTAC 4 cut(s) 461, 476, 649, 867
CviAII CATG 3 cut(s) 914, 935, 1319
CviQI GTAC 4 cut(s) 461, 476, 649, 867
DdeI CTNAG 4 cut(s) 14, 159, 399, 452
DpnI GATC 8 cut(s) 224, 252, 396, 852, 881, 1179, 1317, 1364
DpnII GATC 8 cut(s) 222, 250, 394, 850, 879, 1177, 1315, 1362
DrdI GACNNNNNNGTC 1 cut(s) 274
DseDI GACNNNNNNGTC 1 cut(s) 274
EaeI YGGCCR 1 cut(s) 710
Eam1104I CTCTTC 6 cut(s) 121, 202, 915, 973, 1053, 1249
EarI CTCTTC 6 cut(s) 121, 202, 915, 973, 1053, 1249
EciI GGCGGA 1 cut(s) 86
Eco130I CCWWGG 3 cut(s) 375, 546, 913
Eco47I GGWCC 1 cut(s) 49
EcoRI GAATTC 1 cut(s) 1356
EcoRII CCWGG 2 cut(s) 122, 316
EcoT14I CCWWGG 3 cut(s) 375, 546, 913
ErhI CCWWGG 3 cut(s) 375, 546, 913
FaeI CATG 3 cut(s) 917, 938, 1322
FaqI GGGAC 2 cut(s) 140, 353
FatI CATG 3 cut(s) 913, 934, 1318
FauNDI CATATG 1 cut(s) 1337
FbaI TGATCA 1 cut(s) 1362
FblI GTMKAC 3 cut(s) 702, 1032, 1383
Fnu4HI GCNGC 5 cut(s) 213, 690, 750, 891, 1194
FokI GGATG 4 cut(s) 359, 578, 1256, 1288
Fsp4HI GCNGC 5 cut(s) 213, 690, 750, 891, 1194
FspBI CTAG 4 cut(s) 672, 791, 812, 1456
GlaI GCGC 1 cut(s) 1391
GluI GCNGC 5 cut(s) 213, 690, 750, 891, 1194
GsuI CTGGAG 1 cut(s) 815
HaeII RGCGCY 1 cut(s) 1393
HaeIII GGCC 4 cut(s) 80, 202, 712, 1417
HapII CCGG 2 cut(s) 996, 1045
HhaI GCGC 1 cut(s) 1392
Hin1II CATG 3 cut(s) 917, 938, 1322
Hin6I GCGC 1 cut(s) 1390
HinP1I GCGC 1 cut(s) 1390
HincII GTYRAC 2 cut(s) 1033, 1087
HindII GTYRAC 2 cut(s) 1033, 1087
HindIII AAGCTT 2 cut(s) 401, 1121
HinfI GANTC 5 cut(s) 140, 161, 616, 801, 828
HpaII CCGG 2 cut(s) 996, 1045
HphI GGTGA 7 cut(s) 260, 314, 365, 849, 992, 1028, 1087
Hpy166II GTNNAC 8 cut(s) 291, 476, 651, 703, 1033, 1087, 1117, 1384
Hpy188I TCNGA 6 cut(s) 17, 145, 267, 520, 615, 1362
Hpy188III TCNNGA 6 cut(s) 425, 679, 832, 1103, 1366, 1406
Hpy8I GTNNAC 8 cut(s) 291, 476, 651, 703, 1033, 1087, 1117, 1384
Hpy99I CGWCG 4 cut(s) 134, 137, 140, 283
HpyAV CCTTC 4 cut(s) 230, 513, 1048, 1086
HpyCH4III ACNGT 2 cut(s) 421, 1135
HpyCH4IV ACGT 2 cut(s) 194, 256
HpyCH4V TGCA 3 cut(s) 692, 934, 1196
HpyF10VI GCNNNNNNNGC 3 cut(s) 755, 1190, 1349
HpyF3I CTNAG 4 cut(s) 14, 159, 399, 452
HpySE526I ACGT 2 cut(s) 194, 256
Hsp92II CATG 3 cut(s) 917, 938, 1322
HspAI GCGC 1 cut(s) 1390
Ksp22I TGATCA 1 cut(s) 1362
Kzo9I GATC 8 cut(s) 222, 250, 394, 850, 879, 1177, 1315, 1362
LguI GCTCTTC 2 cut(s) 202, 1249
LmnI GCTCC 5 cut(s) 39, 547, 727, 1189, 1225
Lsp1109I GCAGC 5 cut(s) 224, 676, 736, 877, 1180
LweI GCATC 3 cut(s) 529, 701, 1009
MabI ACCWGGT 1 cut(s) 316
MaeI CTAG 4 cut(s) 672, 791, 812, 1456
MaeII ACGT 2 cut(s) 194, 256
MaeIII GTNAC 4 cut(s) 353, 415, 1093, 1293
MalI GATC 8 cut(s) 224, 252, 396, 852, 881, 1179, 1317, 1364
MboI GATC 8 cut(s) 222, 250, 394, 850, 879, 1177, 1315, 1362
MboII GAAGA 9 cut(s) 30, 108, 219, 652, 932, 960, 1070, 1266, 1325
MfeI CAATTG 2 cut(s) 174, 696
MflI RGATCY 1 cut(s) 394
MluCI AATT 5 cut(s) 174, 696, 1146, 1356, 1421
MlyI GAGTC 4 cut(s) 134, 170, 795, 822
MroXI GAANNNNTTC 2 cut(s) 778, 1233
MseI TTAA 2 cut(s) 480, 665
MslI CAYNNNNRTG 2 cut(s) 300, 978
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 2 cut(s) 996, 1045
MspR9I CCNGG 4 cut(s) 124, 318, 996, 1046
MunI CAATTG 2 cut(s) 174, 696
Mva1269I GAATGC 1 cut(s) 494
MvaI CCWGG 2 cut(s) 124, 318
MwoI GCNNNNNNNGC 3 cut(s) 755, 1190, 1349
NciI CCSGG 2 cut(s) 996, 1046
NcoI CCATGG 1 cut(s) 913
NdeI CATATG 1 cut(s) 1337
NdeII GATC 8 cut(s) 222, 250, 394, 850, 879, 1177, 1315, 1362
NlaIII CATG 3 cut(s) 917, 938, 1322
NlaIV GGNNCC 3 cut(s) 51, 396, 1140
NmuCI GTSAC 3 cut(s) 353, 415, 1093
NspI RCATGY 1 cut(s) 938
OliI CACNNNNGTG 2 cut(s) 300, 978
PciSI GCTCTTC 2 cut(s) 202, 1249
PcsI WCGNNNNNNNCGW 2 cut(s) 135, 141
PctI GAATGC 1 cut(s) 494
PdmI GAANNNNTTC 2 cut(s) 778, 1233
PfeI GAWTC 1 cut(s) 616
PfoI TCCNGGA 1 cut(s) 1044
PkrI GCNGC 5 cut(s) 214, 691, 751, 892, 1195
PleI GAGTC 4 cut(s) 134, 169, 795, 822
PpsI GAGTC 4 cut(s) 134, 169, 795, 822
Ppu21I YACGTR 1 cut(s) 257
PsiI TTATAA 1 cut(s) 744
Psp1406I AACGTT 1 cut(s) 194
Psp6I CCWGG 2 cut(s) 122, 316
PspGI CCWGG 2 cut(s) 122, 316
PspN4I GGNNCC 3 cut(s) 51, 396, 1140
PspPI GGNCC 3 cut(s) 49, 79, 201
PstI CTGCAG 1 cut(s) 1198
PsuI RGATCY 1 cut(s) 394
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 4 cut(s) 462, 477, 650, 868
RsaNI GTAC 4 cut(s) 461, 476, 649, 867
RseI CAYNNNNRTG 2 cut(s) 300, 978
SalI GTCGAC 1 cut(s) 1031
SapI GCTCTTC 2 cut(s) 202, 1249
SaqAI TTAA 2 cut(s) 480, 665
SatI GCNGC 5 cut(s) 213, 690, 750, 891, 1194
Sau3AI GATC 8 cut(s) 222, 250, 394, 850, 879, 1177, 1315, 1362
Sau96I GGNCC 3 cut(s) 49, 79, 201
SchI GAGTC 4 cut(s) 134, 170, 795, 822
ScrFI CCNGG 4 cut(s) 124, 318, 996, 1046
SexAI ACCWGGT 1 cut(s) 316
SfaNI GCATC 3 cut(s) 529, 701, 1009
SfcI CTRYAG 1 cut(s) 1194
SinI GGWCC 1 cut(s) 49
SmiMI CAYNNNNRTG 2 cut(s) 300, 978
SmlI CTYRAG 2 cut(s) 425, 1238
SmoI CTYRAG 2 cut(s) 425, 1238
Sse9I AATT 5 cut(s) 174, 696, 1146, 1356, 1421
SsiI CCGC 3 cut(s) 97, 574, 999
SspMI CTAG 4 cut(s) 672, 791, 812, 1456
StyD4I CCNGG 4 cut(s) 122, 316, 994, 1044
StyI CCWWGG 3 cut(s) 375, 546, 913
TaaI ACNGT 2 cut(s) 421, 1135
TaiI ACGT 2 cut(s) 197, 259
TaqI TCGA 3 cut(s) 70, 878, 1032
TasI AATT 5 cut(s) 174, 696, 1146, 1356, 1421
TatI WGTACW 2 cut(s) 475, 648
TfiI GAWTC 1 cut(s) 616
Tru1I TTAA 2 cut(s) 480, 665
Tru9I TTAA 2 cut(s) 480, 665
TscAI CASTG 4 cut(s) 846, 877, 1042, 1140
TseFI GTSAC 3 cut(s) 353, 415, 1093
TseI GCWGC 5 cut(s) 212, 689, 749, 890, 1193
Tsp45I GTSAC 3 cut(s) 353, 415, 1093
TspDTI ATGAA 4 cut(s) 547, 608, 648, 653
TspGWI ACGGA 1 cut(s) 504
TspRI CASTG 4 cut(s) 846, 877, 1042, 1140
VpaK11BI GGWCC 1 cut(s) 49
XapI RAATTY 2 cut(s) 1356, 1421
XceI RCATGY 1 cut(s) 938
XmiI GTMKAC 3 cut(s) 702, 1032, 1383
XmnI GAANNNNTTC 2 cut(s) 778, 1233
XspI CTAG 4 cut(s) 672, 791, 812, 1456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.