Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001706

Physical Location & Seq

Genomic Coordinates Forward (+)

8780813 .. 8782866

Gene Structure 2054 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG108900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGTGGGTCGAGCCCTGAATTCCGACCACCTTGGACAACCCATACGAGCCGGTGACCGTGTCACTAGACCTCAATTTGCTGGACAGAGATCCCAGAGTGGGAAAACAGAGGAGGGAGACAAGGATGATGGTGACACAGCAACAAGAGAAGCGAAAGAGGAGATTGGTTTGGATCCTAAGCTTGTGAATGTTGTCACTGTTCTTGAACCATTTTTGTCAAAGCACCTACTGAGAGTTGTACCTGTTATCGGTATACTTAACGATAAGGAAGCATTCAAGCCTGCTCCAAATCCGGCCGAAGTGGAATCAGTATTTGATGCTCCCTTGGAAATGTTCATCAAGGAAGAAAATGAAACACCTGGATGGACCCAACTGAAGCTTCCTGGTCAAGCTCCTTCTGTACGTTGTGGCCATACCATCACATCTGGAGGACACTATGTACTTTACCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006104 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0010945 GO:0015936 GO:0015937 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

150

Amino Acids

16.38

Weight (kDa)

5.37

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	33 - 104	5.9e-06	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT2G33980 AT2G33980 AT2G33980 AT2G33980
fragaria_vesca	FvH4_3g08140
malus_domestica	MD05G1305000.v1.1 MD10G1284300.v1.1
prunus_persica	Prupe.4G057200_v2.0.a1
pyrus_communis	pycom05g28230 pycom10g23720
rosa_chinensis	RchiOBHm_Chr1g0373431 RchiOBHm_Chr2g0139421 RchiOBHm_Chr2g0167991 RchiOBHm_Chr2g0168001 RchiOBHm_Chr5g0010041 RchiOBHm_Chr5g0010051
rosa_laevigata	RLG00000031721 RLG00000031722
rosa_multiflora	Rmu_co8078996.1_g000001 Rmu_sc0001896.1_g000034 Rmu_sc0002275.1_g000008 Rmu_sc0016197.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066120 Rroxscaffold_1G00066130 Rroxscaffold_2G00103220
rosa_rugosa	Rorug04G0448800 Rorug04G0448900 Rorug04G0448900 Rorug04G0448900
rosa_samantha	Rh3BG108900 Rh3CG348700 Rh5AG079600 Rh5AG079700 Rh5BG074400 Rh5BG074500 Rh5CG087000 Rh5CG087100 Rh5DG075100 Rh5DG075200
rosa_wichuraiana	Rw3G023780 Rw5G007370 Rw5G007380 Rw7G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	253
AclWI	GGATC	3 cut(s)	84, 167, 180
AcoI	YGGCCR	2 cut(s)	294, 409
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	395
AfaI	GTAC	3 cut(s)	240, 402, 441
AfiI	CCNNNNNNNGG	2 cut(s)	99, 248
AgsI	TTSAA	2 cut(s)	206, 277
AjnI	CCWGG	2 cut(s)	358, 382
AjuI	GAANNNNNNNTTGG	2 cut(s)	363, 395
AluBI	AGCT	3 cut(s)	181, 379, 392
AluI	AGCT	3 cut(s)	181, 379, 392
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	3 cut(s)	84, 167, 180
AoxI	GGCC	2 cut(s)	294, 409
ApoI	RAATTY	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	366
AsuHPI	GGTGA	2 cut(s)	65, 143
AvaII	GGWCC	1 cut(s)	366
BalI	TGGCCA	1 cut(s)	411
BamHI	GGATCC	1 cut(s)	172
BanII	GRGCYC	1 cut(s)	16
BccI	CCATC	3 cut(s)	122, 357, 425
BciT130I	CCWGG	2 cut(s)	360, 384
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	1 cut(s)	66
Bme1390I	CCNGG	2 cut(s)	360, 384
Bme18I	GGWCC	1 cut(s)	366
BmgT120I	GGNCC	1 cut(s)	366
BmiI	GGNNCC	2 cut(s)	174, 368
BmrFI	CCNGG	2 cut(s)	360, 384
BmsI	GCATC	1 cut(s)	307
BpmI	CTGGAG	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	31, 324
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 248
Bse118I	RCCGGY	1 cut(s)	50
BseBI	CCWGG	2 cut(s)	360, 384
BseDI	CCNNGG	2 cut(s)	31, 324
BseGI	GGATG	2 cut(s)	130, 368
BseLI	CCNNNNNNNGG	2 cut(s)	99, 248
BseMII	CTCAG	1 cut(s)	221
BseRI	GAGGAG	2 cut(s)	125, 173
BseX3I	CGGCCG	1 cut(s)	294
Bsh1285I	CGRYCG	1 cut(s)	297
BshFI	GGCC	2 cut(s)	296, 411
BsiEI	CGRYCG	1 cut(s)	297
BsiSI	CCGG	2 cut(s)	51, 293
BslI	CCNNNNNNNGG	2 cut(s)	99, 248
BsmAI	GTCTC	1 cut(s)	111
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	2 cut(s)	296, 411
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	2 cut(s)	89, 172
BspANI	GGCC	2 cut(s)	296, 411
BspCNI	CTCAG	1 cut(s)	222
BspLI	GGNNCC	2 cut(s)	174, 368
BspPI	GGATC	3 cut(s)	84, 167, 180
BsrFI	RCCGGY	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	2 cut(s)	31, 324
BssMI	GATC	2 cut(s)	89, 172
BssNAI	GTATAC	1 cut(s)	254
BssT1I	CCWWGG	2 cut(s)	31, 324
Bst1107I	GTATAC	1 cut(s)	254
Bst2UI	CCWGG	2 cut(s)	360, 384
Bst4CI	ACNGT	2 cut(s)	59, 199
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	2 cut(s)	177, 230
BstEII	GGTNACC	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	130, 368
BstKTI	GATC	2 cut(s)	92, 175
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	2 cut(s)	89, 172
BstMCI	CGRYCG	1 cut(s)	297
BstNI	CCWGG	2 cut(s)	360, 384
BstPI	GGTNACC	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	358, 382
BstX2I	RGATCY	2 cut(s)	89, 172
BstYI	RGATCY	2 cut(s)	89, 172
BstZ17I	GTATAC	1 cut(s)	254
BstZI	CGGCCG	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	296, 411
BtsCI	GGATG	2 cut(s)	130, 368
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	282
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	366
Csp6I	GTAC	3 cut(s)	239, 401, 440
CviJI	RGCY	8 cut(s)	14, 50, 181, 280, 296, 379, 392, 411
CviKI_1	RGCY	8 cut(s)	14, 50, 181, 280, 296, 379, 392, 411
CviQI	GTAC	3 cut(s)	239, 401, 440
DdeI	CTNAG	2 cut(s)	177, 230
DpnI	GATC	2 cut(s)	91, 174
DpnII	GATC	2 cut(s)	89, 172
EaeI	YGGCCR	2 cut(s)	294, 409
EagI	CGGCCG	1 cut(s)	294
EclXI	CGGCCG	1 cut(s)	294
Eco130I	CCWWGG	2 cut(s)	31, 324
Eco24I	GRGCYC	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	366
Eco52I	CGGCCG	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	395
Eco91I	GGTNACC	1 cut(s)	53
EcoO65I	GGTNACC	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	19
EcoRII	CCWGG	2 cut(s)	358, 382
EcoT14I	CCWWGG	2 cut(s)	31, 324
EcoT38I	GRGCYC	1 cut(s)	16
ErhI	CCWWGG	2 cut(s)	31, 324
FaiI	YATR	4 cut(s)	44, 254, 414, 438
FblI	GTMKAC	1 cut(s)	253
FokI	GGATG	2 cut(s)	137, 375
FriOI	GRGCYC	1 cut(s)	16
FspBI	CTAG	1 cut(s)	66
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	2 cut(s)	296, 411
HapII	CCGG	2 cut(s)	51, 293
HindIII	AAGCTT	2 cut(s)	179, 377
HinfI	GANTC	1 cut(s)	305
HpaII	CCGG	2 cut(s)	51, 293
HphI	GGTGA	2 cut(s)	65, 143
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	2 cut(s)	203, 426
Hpy8I	GTNNAC	1 cut(s)	254
HpyAV	CCTTC	1 cut(s)	405
HpyCH4III	ACNGT	2 cut(s)	59, 199
HpyCH4IV	ACGT	1 cut(s)	403
HpyF3I	CTNAG	2 cut(s)	177, 230
HpySE526I	ACGT	1 cut(s)	403
Kzo9I	GATC	2 cut(s)	89, 172
LmnI	GCTCC	3 cut(s)	289, 325, 397
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	4 cut(s)	53, 61, 131, 193
MalI	GATC	2 cut(s)	91, 174
MboI	GATC	2 cut(s)	89, 172
MboII	GAAGA	1 cut(s)	356
MflI	RGATCY	2 cut(s)	89, 172
MhlI	GDGCHC	1 cut(s)	16
MlsI	TGGCCA	1 cut(s)	411
MluCI	AATT	2 cut(s)	19, 74
MluNI	TGGCCA	1 cut(s)	411
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	5 cut(s)	81, 103, 106, 151, 422
Mox20I	TGGCCA	1 cut(s)	411
MscI	TGGCCA	1 cut(s)	411
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	1 cut(s)	361
Msp20I	TGGCCA	1 cut(s)	411
MspI	CCGG	2 cut(s)	51, 293
MspR9I	CCNGG	2 cut(s)	360, 384
Mva1269I	GAATGC	1 cut(s)	272
MvaI	CCWGG	2 cut(s)	360, 384
NdeII	GATC	2 cut(s)	89, 172
NlaIV	GGNNCC	2 cut(s)	174, 368
NmuCI	GTSAC	4 cut(s)	53, 61, 131, 193
PctI	GAATGC	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	305
PflFI	GACNNNGTC	1 cut(s)	59
Psp6I	CCWGG	2 cut(s)	358, 382
PspEI	GGTNACC	1 cut(s)	53
PspGI	CCWGG	2 cut(s)	358, 382
PspN4I	GGNNCC	2 cut(s)	174, 368
PspPI	GGNCC	1 cut(s)	366
PsuI	RGATCY	2 cut(s)	89, 172
PsyI	GACNNNGTC	1 cut(s)	59
RsaI	GTAC	3 cut(s)	240, 402, 441
RsaNI	GTAC	3 cut(s)	239, 401, 440
RseI	CAYNNNNRTG	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	258
Sau3AI	GATC	2 cut(s)	89, 172
Sau96I	GGNCC	1 cut(s)	366
ScrFI	CCNGG	2 cut(s)	360, 384
SduI	GDGCHC	1 cut(s)	16
SfaNI	GCATC	1 cut(s)	307
SinI	GGWCC	1 cut(s)	366
SmiMI	CAYNNNNRTG	1 cut(s)	361
Sse9I	AATT	2 cut(s)	19, 74
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	2 cut(s)	358, 382
StyI	CCWWGG	2 cut(s)	31, 324
TaaI	ACNGT	2 cut(s)	59, 199
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	1 cut(s)	10
TasI	AATT	2 cut(s)	19, 74
TatI	WGTACW	1 cut(s)	439
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	4 cut(s)	53, 61, 131, 193
Tsp45I	GTSAC	4 cut(s)	53, 61, 131, 193
TspDTI	ATGAA	2 cut(s)	325, 366
TspRI	CASTG	1 cut(s)	202
Tth111I	GACNNNGTC	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	366
XapI	RAATTY	1 cut(s)	19
XmiI	GTMKAC	1 cut(s)	253
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.