Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001706

Physical Location & Seq

Genomic Coordinates Reverse (-)

30097730 .. 30099534

Gene Structure 1805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G023780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCTCTCAAATACTCGGCTCAGATGCTCTTCGAGCTCCGAATCTCGAGGCTCTCTCCCTCACTCCTCTATTCTGTTCACGAGTCATGGTGAGGTTTCTTTGCCAGGTGGGAAAACAGAGGAGGGAGACAAGGATGATGGTGACACAGCAACAAGAGAAGCGAAAGAGGAGATTGGTTTGGATCCTAAGCTTGTGAATGTTGTCACTGTTCTTGAACCATTTTTGTCAAAGCACCTACTGAGAGTTGTACCTGTTATCGGTATACTTAACGATAAGGAAGCATTCAAGCCTGCTCCAAATCCGGCCGAAGTGCAATCAGTATTTGATGCTCCCTTGGAAATGTTCATCAAGGATGAAAACAGGAGGGCAGAGGAGAGAGAGTGGATGGGTAACAAATACCTGATTCATTTCTTTGACTATGAAACCAACAACAAGAAGTACATGATATGGGGCTTAACTGCTGGTATCTTGATTAGGGCTGCATCAATTGTATATGAACGGCCTCCACCTTTTGTTCCTTTTATTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006104 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0010945 GO:0015936 GO:0015937 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

176

Amino Acids

19.76

Weight (kDa)

5.44

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	27 - 122	3.4e-09	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT1G28960 AT2G33980 AT2G33980 AT2G33980 AT2G33980
fragaria_vesca	FvH4_3g08140
malus_domestica	MD05G1305000.v1.1 MD10G1284300.v1.1
prunus_persica	Prupe.4G057200_v2.0.a1
pyrus_communis	pycom05g28230 pycom10g23720
rosa_chinensis	RchiOBHm_Chr1g0373431 RchiOBHm_Chr2g0139421 RchiOBHm_Chr2g0167991 RchiOBHm_Chr2g0168001 RchiOBHm_Chr5g0010041 RchiOBHm_Chr5g0010051
rosa_laevigata	RLG00000031721 RLG00000031722
rosa_multiflora	Rmu_co8078996.1_g000001 Rmu_sc0001896.1_g000034 Rmu_sc0002275.1_g000008 Rmu_sc0016197.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066120 Rroxscaffold_1G00066130 Rroxscaffold_2G00103220
rosa_rugosa	Rorug04G0448800 Rorug04G0448900 Rorug04G0448900 Rorug04G0448900
rosa_samantha	Rh3BG108900 Rh3CG348700 Rh5AG079600 Rh5AG079700 Rh5BG074400 Rh5BG074500 Rh5CG087000 Rh5CG087100 Rh5DG075100 Rh5DG075200
rosa_wichuraiana	Rw3G023780 Rw5G007370 Rw5G007380 Rw7G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	262
AclWI	GGATC	2 cut(s)	176, 189
AcoI	YGGCCR	1 cut(s)	303
AfaI	GTAC	2 cut(s)	249, 440
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgsI	TTSAA	2 cut(s)	215, 286
AjnI	CCWGG	1 cut(s)	103
AluBI	AGCT	2 cut(s)	36, 190
AluI	AGCT	2 cut(s)	36, 190
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	2 cut(s)	176, 189
Ama87I	CYCGRG	1 cut(s)	45
AoxI	GGCC	2 cut(s)	303, 500
ApeKI	GCWGC	1 cut(s)	479
AsuHPI	GGTGA	2 cut(s)	101, 152
AvaI	CYCGRG	1 cut(s)	45
BamHI	GGATCC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	38
BauI	CACGAG	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	466
BccI	CCATC	2 cut(s)	131, 379
BceAI	ACGGC	1 cut(s)	515
BciT130I	CCWGG	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	120
BisI	GCNGC	1 cut(s)	480
BlsI	GCNGC	1 cut(s)	481
Bme1390I	CCNGG	1 cut(s)	105
BmeT110I	CYCGRG	1 cut(s)	45
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	1 cut(s)	105
BmsI	GCATC	3 cut(s)	14, 316, 491
BplI	GAGNNNNNCTC	2 cut(s)	39, 71
Bpu10I	CCTNAGC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	333
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
BseBI	CCWGG	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	3 cut(s)	139, 358, 390
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMII	CTCAG	2 cut(s)	34, 230
BseRI	GAGGAG	4 cut(s)	55, 134, 182, 386
BseX3I	CGGCCG	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	466
Bsh1285I	CGRYCG	1 cut(s)	306
BshFI	GGCC	2 cut(s)	305, 502
BsiEI	CGRYCG	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	120
BsmI	GAATGC	1 cut(s)	281
BsnI	GGCC	2 cut(s)	305, 502
BsoBI	CYCGRG	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	181
BspANI	GGCC	2 cut(s)	305, 502
BspCNI	CTCAG	2 cut(s)	33, 231
BspLI	GGNNCC	1 cut(s)	183
BspPI	GGATC	2 cut(s)	176, 189
BspQI	GCTCTTC	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	1 cut(s)	181
BssNAI	GTATAC	1 cut(s)	263
BssSI	CACGAG	1 cut(s)	79
BssT1I	CCWWGG	1 cut(s)	333
Bst1107I	GTATAC	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	3 cut(s)	20, 186, 239
BstF5I	GGATG	3 cut(s)	139, 358, 390
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	181
BstMCI	CGRYCG	1 cut(s)	306
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	466
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BstZ17I	GTATAC	1 cut(s)	263
BstZI	CGGCCG	1 cut(s)	303
BsuRI	GGCC	2 cut(s)	305, 502
BtsCI	GGATG	3 cut(s)	139, 358, 390
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	291
Csp6I	GTAC	2 cut(s)	248, 439
CviAII	CATG	2 cut(s)	86, 442
CviJI	RGCY	9 cut(s)	19, 36, 51, 190, 289, 305, 453, 479, 502
CviKI_1	RGCY	9 cut(s)	19, 36, 51, 190, 289, 305, 453, 479, 502
CviQI	GTAC	2 cut(s)	248, 439
DdeI	CTNAG	3 cut(s)	20, 186, 239
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	303
EagI	CGGCCG	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
Ecl136II	GAGCTC	1 cut(s)	36
EclXI	CGGCCG	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	333
Eco24I	GRGCYC	1 cut(s)	38
Eco52I	CGGCCG	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	36
Eco88I	CYCGRG	1 cut(s)	45
EcoICRI	GAGCTC	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	333
EcoT38I	GRGCYC	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	2 cut(s)	89, 445
FaiI	YATR	7 cut(s)	87, 263, 420, 443, 448, 493, 495
FatI	CATG	2 cut(s)	85, 441
FblI	GTMKAC	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	480
FokI	GGATG	3 cut(s)	146, 365, 397
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	480
GluI	GCNGC	1 cut(s)	480
HaeIII	GGCC	2 cut(s)	305, 502
HapII	CCGG	1 cut(s)	302
Hin1II	CATG	2 cut(s)	89, 445
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	3 cut(s)	41, 82, 403
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	2 cut(s)	101, 152
Hpy166II	GTNNAC	2 cut(s)	78, 263
Hpy188I	TCNGA	2 cut(s)	23, 40
Hpy188III	TCNNGA	4 cut(s)	45, 79, 212, 469
Hpy8I	GTNNAC	2 cut(s)	78, 263
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4V	TGCA	2 cut(s)	313, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	3 cut(s)	20, 186, 239
Hsp92II	CATG	2 cut(s)	89, 445
Kzo9I	GATC	1 cut(s)	181
LguI	GCTCTTC	1 cut(s)	34
LmnI	GCTCC	3 cut(s)	41, 298, 334
LpnPI	CCDG	8 cut(s)	90, 117, 264, 303, 315, 346, 413, 447
Lsp1109I	GCAGC	1 cut(s)	466
LweI	GCATC	3 cut(s)	14, 316, 491
MaeIII	GTNAC	3 cut(s)	140, 202, 389
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	1 cut(s)	21
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	1 cut(s)	486
MlyI	GAGTC	1 cut(s)	91
MseI	TTAA	2 cut(s)	267, 455
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	1 cut(s)	105
MunI	CAATTG	1 cut(s)	486
Mva1269I	GAATGC	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	33
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	2 cut(s)	89, 445
NlaIV	GGNNCC	1 cut(s)	183
NmuCI	GTSAC	2 cut(s)	140, 202
PaeR7I	CTCGAG	1 cut(s)	45
PciSI	GCTCTTC	1 cut(s)	34
PctI	GAATGC	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	41, 403
PkrI	GCNGC	1 cut(s)	481
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
Psp124BI	GAGCTC	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	183
PsuI	RGATCY	1 cut(s)	181
RsaI	GTAC	2 cut(s)	249, 440
RsaNI	GTAC	2 cut(s)	248, 439
SacI	GAGCTC	1 cut(s)	38
SapI	GCTCTTC	1 cut(s)	34
SaqAI	TTAA	2 cut(s)	267, 455
SatI	GCNGC	1 cut(s)	480
Sau3AI	GATC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	105
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	8 cut(s)	38, 96, 109, 192, 237, 253, 402, 511
SfaNI	GCATC	3 cut(s)	14, 316, 491
Sfr274I	CTCGAG	1 cut(s)	45
SlaI	CTCGAG	1 cut(s)	45
SmlI	CTYRAG	1 cut(s)	45
SmoI	CTYRAG	1 cut(s)	45
Sse9I	AATT	1 cut(s)	486
SstI	GAGCTC	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	103
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	1 cut(s)	208
TaqI	TCGA	2 cut(s)	32, 46
TasI	AATT	1 cut(s)	486
TatI	WGTACW	1 cut(s)	438
TfiI	GAWTC	2 cut(s)	41, 403
Tru1I	TTAA	2 cut(s)	267, 455
Tru9I	TTAA	2 cut(s)	267, 455
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	2 cut(s)	140, 202
TseI	GCWGC	1 cut(s)	479
Tsp45I	GTSAC	2 cut(s)	140, 202
TspDTI	ATGAA	5 cut(s)	334, 369, 395, 435, 510
TspRI	CASTG	1 cut(s)	211
XhoI	CTCGAG	1 cut(s)	45
XmiI	GTMKAC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.