Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010001

Physical Location & Seq

Genomic Coordinates Forward (+)

18627950 .. 18629697

Gene Structure 1748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G45930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGCGTCTCTTCTCGGAAGATCTCCTTCTTCAATCTTGACCTGCCCTCGTATTTCTTCTCCTTCCTCAACATCTTCAATGTCCCATCTCTGCTTCGGACCAGAGAAACTTTCTGGAAGAATCCAATTCAATCCAAAGAAGAACAGATCTCGTTACCATGTCTCTGTTATGAATGTCGCTACAGAGATCAACTCTGTTGAACAAGCAAAGAAGATTGATTCAAAGGAAAGTGCAAGACCTGTTTATCCGTTTGCTGCTATAGTTGGACAAGATGAGATGAAGCTATGCCTTTTGTTAAATGTGATTGACCCGAAGATAGGTGGTGTGATGATAATGGGAGATAGAGGAACTGGTAAATCAACAACTGTTAGATCTTTAGTTGATTTGCTTCCTGAGATCACTGTTGTTTCTGGTGATCCGTATAACTCAGACCCGAGAGATCCTGAGTGTATGGGAAAGGAAGTAAGAGAGAAAGTTCAAAAGGGAGAAGAATTGTCTGTTATTGAAACCAAAATCAATATGGTTGATCTTCCTTTGGGTGCTACTGAAGATAGAGTTTGTGGAACTATTGATATCGAAAAGGCTTTAACCGAAGGTGTTAAGGCGTTTGAGCCTGGACTACTAGCTAAAGCTAATAGAGGGATTCTTTATGTTGATGAAGTTAATCTTTTGGATGATCATTTAGTTGATGTTCTTCTTGATTCAGCTGCATCTGGTTGGAACACTGTTGAAAGAGAAGGGATATCGATTTCTCATCCTGCTCGGTTTATCCTCATTGGTTCAGGAAATCCTGAAGAAGGAGAGCTTAGACCACAGCTTCTTGACAGGTTTGGTATGCACGCGCAAGTAGGGACGGTTAGAGACGCCGAGCTGAGAGTTAAGATTGTTGAAGAACGAGCTCGTTTCGATAGTAACCCAAAGGAGTTTCGAGAAACTTATCAAGAAGAACAACTGAAGCTTCAGGAGCAGATTACAACTGCAAGAAGCAATCTTTCTGCAGTTCAGATTGATCAAGATTTGAAAGTGAAGATCTCTAAGGTCTGTGCTGAGCTGGACGTTGATGGATTGAGAGGAGACATGGTGATAAACAGAGCAGCTAGAGCGCTTGCAGCACTCCAAGGAAGAGATCAAGTTACAGCTGAAGATGTTGGTATTGTTATACCGAATTGTTTGAGACACAGACTCAGAAAAGATCCATTGGAGTCTATGGATTCGGGAATTCTCGTTACCGAGAAGTTCTATGAGGTTTTCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010007 GO:0010033 GO:0015994 GO:0015995 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016851 GO:0016874 GO:0016887 GO:0017111 GO:0018130 GO:0019438 GO:0030312 GO:0032991 GO:0033013 GO:0033014 GO:0034641 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051002 GO:0051003 GO:0051186 GO:0051188 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Mg_chelatase

Protein Analysis

418

Amino Acids

46.1

Weight (kDa)

5.36

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mg_chelatase	PF01078	194 - 264	2.9e-07	Magnesium chelatase, subunit ChlI
AAA_lid_2	PF17863	344 - 403	8.4e-19	AAA lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18480 AT5G45930
fragaria_vesca	FvH4_3g08130 FvH4_3g08130 FvH4_3g08130
malus_domestica	MD05G1304900.v1.1 MD10G1284000.v1.1
prunus_persica	Prupe.4G057500_v2.0.a1
pyrus_communis	pycom05g28220 pycom10g23690
rosa_chinensis	RchiOBHm_Chr5g0010061
rosa_laevigata	RLG00000031723
rosa_multiflora	Rmu_sc0002275.1_g000009 Rmu_sc0016197.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066110
rosa_rugosa	Rorug04G0448900
rosa_samantha	Rh5AG079800 Rh5BG074600 Rh5CG087200 Rh5DG075300
rosa_wichuraiana	Rw5G007390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	50
AccII	CGCG	1 cut(s)	842
AclWI	GGATC	3 cut(s)	410, 434, 1187
AcsI	RAATTY	1 cut(s)	1218
AcuI	CTGAAG	5 cut(s)	567, 813, 944, 974, 1161
AcyI	GRCGYC	2 cut(s)	5, 864
AfeI	AGCGCT	1 cut(s)	1104
AfiI	CCNNNNNNNGG	2 cut(s)	317, 797
AjnI	CCWGG	1 cut(s)	613
Alw21I	GWGCWC	1 cut(s)	901
Alw26I	GTCTC	5 cut(s)	12, 166, 855, 1068, 1168
AlwI	GGATC	3 cut(s)	410, 434, 1187
Ama87I	CYCGRG	1 cut(s)	433
Aor51HI	AGCGCT	1 cut(s)	1104
ApeKI	GCWGC	4 cut(s)	254, 707, 1094, 1109
ApoI	RAATTY	1 cut(s)	1218
AspLEI	GCGC	2 cut(s)	844, 1105
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	2 cut(s)	425, 1093
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	901
Bbv12I	GWGCWC	1 cut(s)	901
BbvI	GCAGC	4 cut(s)	241, 694, 1106, 1121
BccI	CCATC	2 cut(s)	93, 1055
BciT130I	CCWGG	1 cut(s)	615
BclI	TGATCA	2 cut(s)	676, 1009
BcoDI	GTCTC	5 cut(s)	12, 166, 855, 1068, 1168
BfaI	CTAG	2 cut(s)	623, 1098
BfmI	CTRYAG	3 cut(s)	180, 258, 996
BfoI	RGCGCY	1 cut(s)	1106
BfuAI	ACCTGC	1 cut(s)	50
BglII	AGATCT	4 cut(s)	20, 146, 371, 1029
BisI	GCNGC	4 cut(s)	255, 708, 1095, 1110
BlpI	GCTNAGC	1 cut(s)	1047
BlsI	GCNGC	4 cut(s)	256, 709, 1096, 1111
Bme1390I	CCNGG	1 cut(s)	615
Bme18I	GGWCC	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	98
BmrFI	CCNGG	1 cut(s)	615
BmsI	GCATC	1 cut(s)	719
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
Bpu1102I	GCTNAGC	1 cut(s)	1047
Bsa29I	ATCGAT	1 cut(s)	746
BsaHI	GRCGYC	2 cut(s)	5, 864
BsaJI	CCNNGG	1 cut(s)	1117
BsaXI	ACNNNNNCTCC	2 cut(s)	1065, 1095
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 797
Bse1I	ACTGG	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	615
BseCI	ATCGAT	1 cut(s)	746
BseDI	CCNNGG	1 cut(s)	1117
BseGI	GGATG	2 cut(s)	679, 754
BseLI	CCNNNNNNNGG	2 cut(s)	317, 797
BseMII	CTCAG	6 cut(s)	384, 435, 441, 863, 1038, 1198
BseNI	ACTGG	1 cut(s)	355
BseRI	GAGGAG	1 cut(s)	1086
BseXI	GCAGC	4 cut(s)	241, 694, 1106, 1121
Bsh1236I	CGCG	1 cut(s)	842
BshVI	ATCGAT	1 cut(s)	746
BsiHKAI	GWGCWC	1 cut(s)	901
BsiHKCI	CYCGRG	1 cut(s)	433
BslFI	GGGAC	2 cut(s)	67, 865
BslI	CCNNNNNNNGG	2 cut(s)	317, 797
BsmAI	GTCTC	5 cut(s)	12, 166, 855, 1068, 1168
BsmBI	CGTCTC	2 cut(s)	12, 855
BsmFI	GGGAC	2 cut(s)	67, 865
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	1 cut(s)	901
Bsp1720I	GCTNAGC	1 cut(s)	1047
BspCNI	CTCAG	6 cut(s)	385, 436, 440, 864, 1039, 1197
BspDI	ATCGAT	1 cut(s)	746
BspFNI	CGCG	1 cut(s)	842
BspMAI	CTGCAG	1 cut(s)	1000
BspMI	ACCTGC	1 cut(s)	50
BspPI	GGATC	3 cut(s)	410, 434, 1187
BsrI	ACTGG	1 cut(s)	355
BssECI	CCNNGG	1 cut(s)	1117
BssNI	GRCGYC	2 cut(s)	5, 864
BssT1I	CCWWGG	1 cut(s)	1117
Bst2UI	CCWGG	1 cut(s)	615
Bst4CI	ACNGT	4 cut(s)	367, 403, 727, 856
Bst6I	CTCTTC	2 cut(s)	15, 1117
BstACI	GRCGYC	2 cut(s)	5, 864
BstC8I	GCNNGC	2 cut(s)	840, 1107
BstDEI	CTNAG	9 cut(s)	393, 427, 444, 806, 872, 1035, 1047, 1184, 1254
BstENI	CCTNNNNNAGG	1 cut(s)	795
BstF5I	GGATG	2 cut(s)	679, 754
BstFNI	CGCG	1 cut(s)	842
BstH2I	RGCGCY	1 cut(s)	1106
BstHHI	GCGC	2 cut(s)	844, 1105
BstMAI	GTCTC	5 cut(s)	12, 166, 855, 1068, 1168
BstMWI	GCNNNNNNNGC	3 cut(s)	964, 1100, 1109
BstNI	CCWGG	1 cut(s)	615
BstSCI	CCNGG	1 cut(s)	613
BstSFI	CTRYAG	3 cut(s)	180, 258, 996
BstUI	CGCG	1 cut(s)	842
BstV1I	GCAGC	4 cut(s)	241, 694, 1106, 1121
BstX2I	RGATCY	6 cut(s)	20, 146, 371, 439, 1029, 1192
BstYI	RGATCY	6 cut(s)	20, 146, 371, 439, 1029, 1192
Bsu15I	ATCGAT	1 cut(s)	746
BsuTUI	ATCGAT	1 cut(s)	746
BtsCI	GGATG	2 cut(s)	679, 754
BtsIMutI	CAGTG	2 cut(s)	399, 723
BveI	ACCTGC	1 cut(s)	50
Cac8I	GCNNGC	2 cut(s)	840, 1107
CfoI	GCGC	2 cut(s)	844, 1105
Cfr13I	GGNCC	1 cut(s)	98
ClaI	ATCGAT	1 cut(s)	746
CseI	GACGC	1 cut(s)	872
CviAII	CATG	2 cut(s)	158, 1078
DdeI	CTNAG	9 cut(s)	393, 427, 444, 806, 872, 1035, 1047, 1184, 1254
Eam1104I	CTCTTC	2 cut(s)	15, 1117
EarI	CTCTTC	2 cut(s)	15, 1117
Ecl136II	GAGCTC	1 cut(s)	899
Eco130I	CCWWGG	1 cut(s)	1117
Eco24I	GRGCYC	1 cut(s)	901
Eco32I	GATATC	2 cut(s)	574, 744
Eco47I	GGWCC	1 cut(s)	98
Eco47III	AGCGCT	1 cut(s)	1104
Eco53kI	GAGCTC	1 cut(s)	899
Eco57I	CTGAAG	5 cut(s)	567, 813, 944, 974, 1161
Eco88I	CYCGRG	1 cut(s)	433
EcoICRI	GAGCTC	1 cut(s)	899
EcoNI	CCTNNNNNAGG	1 cut(s)	795
EcoRI	GAATTC	1 cut(s)	1218
EcoRII	CCWGG	1 cut(s)	613
EcoRV	GATATC	2 cut(s)	574, 744
EcoT14I	CCWWGG	1 cut(s)	1117
EcoT38I	GRGCYC	1 cut(s)	901
ErhI	CCWWGG	1 cut(s)	1117
Esp3I	CGTCTC	2 cut(s)	12, 855
FaeI	CATG	2 cut(s)	161, 1081
FalI	AAGNNNNNCTT	6 cut(s)	10, 42, 651, 683, 789, 821
FaqI	GGGAC	2 cut(s)	67, 865
FatI	CATG	2 cut(s)	157, 1077
FbaI	TGATCA	2 cut(s)	676, 1009
Fnu4HI	GCNGC	4 cut(s)	255, 708, 1095, 1110
FokI	GGATG	2 cut(s)	686, 741
FriOI	GRGCYC	1 cut(s)	901
Fsp4HI	GCNGC	4 cut(s)	255, 708, 1095, 1110
FspBI	CTAG	2 cut(s)	623, 1098
GlaI	GCGC	2 cut(s)	843, 1104
GluI	GCNGC	4 cut(s)	255, 708, 1095, 1110
HaeII	RGCGCY	1 cut(s)	1106
HgaI	GACGC	1 cut(s)	872
HhaI	GCGC	2 cut(s)	844, 1105
Hin1I	GRCGYC	2 cut(s)	5, 864
Hin1II	CATG	2 cut(s)	161, 1081
Hin6I	GCGC	2 cut(s)	842, 1103
HinP1I	GCGC	2 cut(s)	842, 1103
HindIII	AAGCTT	1 cut(s)	956
HinfI	GANTC	7 cut(s)	120, 218, 643, 701, 1182, 1202, 1211
HphI	GGTGA	2 cut(s)	425, 1093
Hpy188I	TCNGA	5 cut(s)	17, 98, 430, 1005, 1187
HpyAV	CCTTC	5 cut(s)	36, 72, 587, 731, 791
HpyCH4III	ACNGT	4 cut(s)	367, 403, 727, 856
HpyCH4IV	ACGT	1 cut(s)	1056
HpyCH4V	TGCA	6 cut(s)	233, 710, 838, 980, 998, 1109
HpyF10VI	GCNNNNNNNGC	3 cut(s)	964, 1100, 1109
HpyF3I	CTNAG	9 cut(s)	393, 427, 444, 806, 872, 1035, 1047, 1184, 1254
HpySE526I	ACGT	1 cut(s)	1056
Hsp92I	GRCGYC	2 cut(s)	5, 864
Hsp92II	CATG	2 cut(s)	161, 1081
HspAI	GCGC	2 cut(s)	842, 1103
Ksp22I	TGATCA	2 cut(s)	676, 1009
LmnI	GCTCC	1 cut(s)	964
Lsp1109I	GCAGC	4 cut(s)	241, 694, 1106, 1121
LweI	GCATC	1 cut(s)	719
MaeI	CTAG	2 cut(s)	623, 1098
MaeII	ACGT	1 cut(s)	1056
MaeIII	GTNAC	4 cut(s)	152, 911, 1132, 1225
MflI	RGATCY	6 cut(s)	20, 146, 371, 439, 1029, 1192
MhlI	GDGCHC	1 cut(s)	901
MluCI	AATT	4 cut(s)	125, 491, 1165, 1218
MlyI	GAGTC	2 cut(s)	1176, 1211
MmeI	TCCRAC	2 cut(s)	244, 698
MnlI	CCTC	7 cut(s)	57, 76, 338, 632, 782, 1064, 1237
MseI	TTAA	5 cut(s)	296, 587, 600, 663, 879
MspA1I	CMGCKG	2 cut(s)	707, 1139
MspR9I	CCNGG	1 cut(s)	615
MvaI	CCWGG	1 cut(s)	615
MvnI	CGCG	1 cut(s)	842
MwoI	GCNNNNNNNGC	3 cut(s)	964, 1100, 1109
NlaIII	CATG	2 cut(s)	161, 1081
NmeAIII	GCCGAG	1 cut(s)	892
PfeI	GAWTC	5 cut(s)	120, 218, 643, 701, 1211
PkrI	GCNGC	4 cut(s)	256, 709, 1096, 1111
PleI	GAGTC	2 cut(s)	1176, 1210
PpsI	GAGTC	2 cut(s)	1176, 1210
Psp124BI	GAGCTC	1 cut(s)	901
Psp6I	CCWGG	1 cut(s)	613
PspGI	CCWGG	1 cut(s)	613
PspPI	GGNCC	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	1000
PsuI	RGATCY	6 cut(s)	20, 146, 371, 439, 1029, 1192
PvuII	CAGCTG	2 cut(s)	707, 1139
SacI	GAGCTC	1 cut(s)	901
SaqAI	TTAA	5 cut(s)	296, 587, 600, 663, 879
SatI	GCNGC	4 cut(s)	255, 708, 1095, 1110
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	2 cut(s)	1176, 1211
ScrFI	CCNGG	1 cut(s)	615
SduI	GDGCHC	1 cut(s)	901
SfaNI	GCATC	1 cut(s)	719
SfcI	CTRYAG	3 cut(s)	180, 258, 996
SinI	GGWCC	1 cut(s)	98
Sse9I	AATT	4 cut(s)	125, 491, 1165, 1218
SspMI	CTAG	2 cut(s)	623, 1098
SstI	GAGCTC	1 cut(s)	901
StyD4I	CCNGG	1 cut(s)	613
StyI	CCWWGG	1 cut(s)	1117
TaaI	ACNGT	4 cut(s)	367, 403, 727, 856
TaiI	ACGT	1 cut(s)	1059
TaqI	TCGA	4 cut(s)	576, 746, 906, 928
TasI	AATT	4 cut(s)	125, 491, 1165, 1218
TfiI	GAWTC	5 cut(s)	120, 218, 643, 701, 1211
Tru1I	TTAA	5 cut(s)	296, 587, 600, 663, 879
Tru9I	TTAA	5 cut(s)	296, 587, 600, 663, 879
TscAI	CASTG	2 cut(s)	406, 730
TseI	GCWGC	4 cut(s)	254, 707, 1094, 1109
TspDTI	ATGAA	3 cut(s)	185, 293, 672
TspGWI	ACGGA	2 cut(s)	237, 408
TspRI	CASTG	2 cut(s)	406, 730
VpaK11BI	GGWCC	1 cut(s)	98
XagI	CCTNNNNNAGG	1 cut(s)	795
XapI	RAATTY	1 cut(s)	1218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	517
XspI	CTAG	2 cut(s)	623, 1098

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.